Wall clock time and date at job start Mon Mar 30 2020 06:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38314 * 119.96266 * 2 1 4 4 C 1.38260 * 120.15193 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07575 * 359.74871 * 4 3 2 6 6 C 1.50696 * 120.04307 * 180.27158 * 5 4 3 7 7 N 1.46896 * 109.47341 * 260.21187 * 6 5 4 8 8 C 1.38894 * 119.91995 * 0.48277 * 5 4 3 9 9 N 1.39679 * 120.07377 * 179.78959 * 8 5 4 10 10 C 1.46900 * 111.00047 * 243.68023 * 9 8 5 11 11 C 1.50702 * 109.46837 * 162.66680 * 10 9 8 12 12 H 1.07998 * 120.00319 * 354.49345 * 11 10 9 13 13 C 1.37880 * 119.99809 * 174.49053 * 11 10 9 14 14 N 1.31510 * 119.99996 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00053 * 179.72301 * 13 11 10 16 16 H 1.48500 * 109.47684 * 270.28071 * 15 13 11 17 17 H 1.48504 * 109.46857 * 30.27945 * 15 13 11 18 18 H 1.48499 * 109.47211 * 150.28027 * 15 13 11 19 19 C 1.46898 * 110.99890 * 119.72587 * 9 8 5 20 20 C 1.53001 * 117.49946 * 266.42794 * 19 9 8 21 21 C 1.53003 * 117.49874 * 197.80502 * 19 9 8 22 22 C 1.38076 * 119.96597 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47265 * 270.02427 * 1 2 3 24 24 H 1.09006 * 109.47655 * 30.01947 * 1 2 3 25 25 H 1.08997 * 109.47396 * 150.02197 * 1 2 3 26 26 H 1.08007 * 119.92415 * 359.97438 * 3 2 1 27 27 H 1.07999 * 119.96449 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46848 * 20.21347 * 6 5 4 29 29 H 1.08999 * 109.47056 * 140.21197 * 6 5 4 30 30 H 1.00897 * 110.99948 * 179.97438 * 7 6 5 31 31 H 1.00899 * 110.99957 * 303.95348 * 7 6 5 32 32 H 1.08994 * 109.47133 * 42.66929 * 10 9 8 33 33 H 1.08999 * 109.46926 * 282.66560 * 10 9 8 34 34 H 0.97001 * 120.00182 * 359.71498 * 14 13 11 35 35 H 1.09001 * 115.55060 * 52.12973 * 19 9 8 36 36 H 1.09010 * 117.49786 * 359.97438 * 20 19 9 37 37 H 1.09001 * 117.50471 * 145.01916 * 20 19 9 38 38 H 1.08998 * 117.50022 * 214.97993 * 21 19 9 39 39 H 1.08998 * 117.49815 * 0.02562 * 21 19 9 40 40 H 1.08000 * 120.03642 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5803 1.2029 -0.0005 5 6 4.2765 0.0099 0.0042 6 6 5.7834 0.0157 0.0098 7 7 6.2791 -0.2202 -1.3528 8 6 3.5859 -1.1952 -0.0007 9 7 4.2867 -2.4035 -0.0004 10 6 4.0294 -3.1616 -1.2321 11 6 5.0904 -4.2182 -1.4024 12 1 5.9257 -4.2599 -0.7191 13 6 4.9947 -5.1317 -2.4308 14 7 3.9779 -5.0807 -3.2631 15 14 6.3139 -6.4365 -2.6467 16 1 7.3853 -5.9155 -3.5332 17 1 6.8910 -6.7807 -1.3223 18 1 5.7141 -7.6507 -3.2560 19 6 3.9581 -3.2023 1.1878 20 6 4.8678 -3.0583 2.4096 21 6 4.9164 -4.3336 1.5656 22 6 2.1966 -1.1962 0.0005 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6558 2.1326 -0.0004 27 1 4.1166 2.1403 -0.0001 28 1 6.1416 0.9822 0.3645 29 1 6.1473 -0.7714 0.6702 30 1 7.2878 -0.2205 -1.3756 31 1 5.9084 -1.0801 -1.7285 32 1 4.0501 -2.4849 -2.0862 33 1 3.0504 -3.6367 -1.1684 34 1 3.2930 -4.4030 -3.1512 35 1 2.8950 -3.3621 1.3676 36 1 5.7104 -2.3711 2.3315 37 1 4.4033 -3.1233 3.3935 38 1 4.4838 -5.2376 1.9943 39 1 5.7909 -4.4849 0.9328 40 1 1.6566 -2.1315 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723162054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:29 Heat of formation + Delta-G solvation = 33.422081 kcal Electronic energy + Delta-G solvation = -20058.161385 eV Core-core repulsion = 17258.393188 eV Total energy + Delta-G solvation = -2799.768197 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.15925 -38.72195 -36.05150 -35.62951 -34.51403 -32.71788 -30.58363 -28.38466 -27.92079 -24.67154 -24.48096 -23.84842 -23.11282 -21.62985 -20.83694 -19.08235 -17.66316 -17.09283 -16.71666 -16.28580 -15.82686 -15.70300 -15.60866 -15.21748 -14.93693 -14.56594 -14.32209 -14.18107 -13.87732 -13.56281 -13.24879 -12.91095 -12.80188 -12.58770 -12.49462 -12.18700 -12.15080 -12.01033 -11.92058 -11.36990 -10.94384 -10.75157 -10.52550 -9.72390 -9.64882 -9.31710 -9.24799 -8.60736 -6.32066 0.38717 0.42067 1.53438 1.61921 1.78423 2.55733 2.73153 2.88271 3.06051 3.19660 3.86448 3.88876 4.01274 4.01671 4.10217 4.14460 4.25444 4.32086 4.38390 4.59529 4.66714 4.70772 4.75235 4.76109 4.77475 4.83627 4.93498 4.98027 5.02834 5.15879 5.27262 5.36158 5.48259 5.59496 5.69450 5.89134 5.95958 6.06052 6.22057 6.39353 6.51369 6.60533 6.78048 7.47228 8.75437 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.006757 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.050455 B = 4142.623578 C = 4267.405159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.086 4.086 3 C -0.130 4.130 4 C -0.097 4.097 5 C -0.087 4.087 6 C 0.120 3.880 7 N -0.849 5.849 8 C 0.092 3.908 9 N -0.465 5.465 10 C 0.217 3.783 11 C -0.577 4.577 12 H 0.067 0.933 13 C -0.037 4.037 14 N -0.942 5.942 15 Si 1.118 2.882 16 H -0.276 1.276 17 H -0.266 1.266 18 H -0.289 1.289 19 C -0.001 4.001 20 C -0.144 4.144 21 C -0.155 4.155 22 C -0.174 4.174 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.154 0.846 27 H 0.149 0.851 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.345 0.655 31 H 0.338 0.662 32 H -0.012 1.012 33 H -0.047 1.047 34 H 0.250 0.750 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.861 10.836 10.698 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.116 4.116 5 C -0.088 4.088 6 C -0.010 4.010 7 N -0.378 5.378 8 C -0.003 4.003 9 N -0.185 5.185 10 C 0.092 3.908 11 C -0.615 4.615 12 H 0.085 0.915 13 C -0.234 4.234 14 N -0.580 5.580 15 Si 0.940 3.060 16 H -0.201 1.201 17 H -0.190 1.190 18 H -0.215 1.215 19 C -0.109 4.109 20 C -0.182 4.182 21 C -0.193 4.193 22 C -0.194 4.194 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.171 0.829 27 H 0.167 0.833 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.006 0.994 33 H -0.029 1.029 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.250 10.331 9.608 14.110 hybrid contribution -1.341 -0.208 0.791 1.571 sum -1.592 10.123 10.399 14.599 Atomic orbital electron populations 1.20807 0.89424 1.03174 1.03135 1.20118 0.97429 0.92437 0.98703 1.21306 0.94097 0.97890 1.01462 1.21251 0.94451 0.97383 0.98475 1.19910 0.96275 0.91642 1.01021 1.20440 0.89940 1.00561 0.90031 1.58928 1.13692 1.43624 1.21597 1.19124 0.90591 0.91779 0.98772 1.59434 1.54957 1.02215 1.01928 1.19404 0.93826 0.91556 0.85992 1.22268 1.09217 1.14553 1.15480 0.91455 1.27259 1.01608 1.01912 0.92664 1.70893 1.12046 1.36252 1.38842 0.82911 0.72788 0.73346 0.76938 1.20136 1.19031 1.21506 1.22183 0.93994 1.02065 0.92669 1.23040 1.01247 0.99877 0.94029 1.23029 1.01842 0.92346 1.02045 1.21587 0.94914 0.98103 1.04845 0.89867 0.89461 0.92742 0.82877 0.83344 0.89218 0.95199 0.84263 0.84943 0.99379 1.02933 0.94068 0.91862 0.88867 0.86952 0.88496 0.88909 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 10.01 71.23 0.71 -1.77 16 2 C -0.09 -2.59 5.88 -19.89 -0.12 -2.71 16 3 C -0.13 -3.41 9.70 22.29 0.22 -3.20 16 4 C -0.10 -2.74 9.66 22.25 0.21 -2.52 16 5 C -0.09 -3.00 5.41 -19.74 -0.11 -3.10 16 6 C 0.12 3.83 6.54 85.56 0.56 4.39 16 7 N -0.85 -29.13 9.61 -190.02 -1.83 -30.96 16 8 C 0.09 3.64 4.59 38.21 0.18 3.81 16 9 N -0.46 -20.07 3.54 -675.69 -2.39 -22.46 16 10 C 0.22 11.46 3.45 85.56 0.30 11.75 16 11 C -0.58 -31.60 8.05 25.60 0.21 -31.40 16 12 H 0.07 3.59 5.48 -2.91 -0.02 3.57 16 13 C -0.04 -2.13 5.46 84.66 0.46 -1.66 16 14 N -0.94 -58.43 13.65 21.45 0.29 -58.14 16 15 Si 1.12 49.97 29.90 68.60 2.05 52.02 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 C 0.00 -0.05 4.57 44.92 0.21 0.15 16 20 C -0.14 -4.56 10.46 30.60 0.32 -4.24 16 21 C -0.16 -5.76 9.38 30.60 0.29 -5.48 16 22 C -0.17 -6.59 8.36 22.40 0.19 -6.40 16 23 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.09 1.59 8.09 -2.38 -0.02 1.57 16 25 H 0.05 1.34 8.08 -2.39 -0.02 1.32 16 26 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 27 H 0.15 3.28 8.04 -2.91 -0.02 3.25 16 28 H 0.09 2.32 8.01 -2.39 -0.02 2.30 16 29 H 0.03 1.02 7.60 -2.39 -0.02 1.00 16 30 H 0.34 10.10 9.08 -89.70 -0.81 9.28 16 31 H 0.34 14.16 8.44 -89.70 -0.76 13.41 16 32 H -0.01 -0.68 7.79 -2.39 -0.02 -0.70 16 33 H -0.05 -2.75 7.52 -2.39 -0.02 -2.77 16 34 H 0.25 15.97 7.18 -92.71 -0.67 15.30 16 35 H 0.06 2.59 7.36 -2.39 -0.02 2.57 16 36 H 0.09 2.93 7.94 -2.38 -0.02 2.91 16 37 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.09 3.88 5.65 -2.39 -0.01 3.86 16 40 H 0.09 3.78 7.47 -2.91 -0.02 3.76 16 Total: -1.00 -65.46 325.75 1.32 -64.13 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.42 Total: 37.78 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 3.62 Total: -42.38 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -3.92 Total: -111.56 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.02 kcal Total: -65.46 1.32 -64.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723162054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.557 kcal (2) G-P(sol) polarization free energy of solvation -65.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds