Wall clock time and date at job start Mon Mar 30 2020 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38124 * 120.03732 * 2 1 4 4 C 1.38266 * 120.07292 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.92425 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46889 * 89.99918 * 5 4 3 7 7 C 1.38310 * 120.14777 * 359.97438 * 4 3 2 8 8 C 1.38082 * 120.07433 * 359.74756 * 7 4 3 9 9 C 1.38888 * 120.03238 * 180.02562 * 2 1 3 10 10 N 1.39674 * 120.07966 * 359.95542 * 9 2 1 11 11 C 1.46897 * 111.00050 * 234.30976 * 10 9 2 12 12 C 1.50698 * 109.47363 * 164.25209 * 11 10 9 13 13 H 1.07997 * 119.99723 * 355.49308 * 12 11 10 14 14 C 1.37872 * 120.00120 * 175.49739 * 12 11 10 15 15 N 1.31515 * 119.99872 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99773 * 179.72241 * 14 12 11 17 17 H 1.48496 * 109.47014 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47200 * 120.00022 * 16 14 12 19 19 H 1.48497 * 109.46766 * 239.99631 * 16 14 12 20 20 C 1.46907 * 110.99915 * 110.35347 * 10 9 2 21 21 C 1.52993 * 117.49823 * 0.28184 * 20 10 9 22 22 C 1.52993 * 117.49772 * 291.65978 * 20 10 9 23 23 H 1.09002 * 109.46788 * 269.98162 * 1 2 3 24 24 H 1.09001 * 109.47223 * 29.97682 * 1 2 3 25 25 H 1.08991 * 109.47595 * 149.97747 * 1 2 3 26 26 H 1.07996 * 119.96594 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.46848 * 209.99547 * 5 4 3 28 28 H 1.09000 * 109.46727 * 329.99949 * 5 4 3 29 29 H 1.00902 * 110.99654 * 56.04703 * 6 5 4 30 30 H 1.00905 * 110.99847 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.95843 * 180.02562 * 7 4 3 32 32 H 1.08000 * 120.03613 * 180.27541 * 8 7 4 33 33 H 1.09001 * 109.47092 * 44.24511 * 11 10 9 34 34 H 1.09001 * 109.47130 * 284.24961 * 11 10 9 35 35 H 0.97004 * 119.99519 * 180.02562 * 15 14 12 36 36 H 1.09001 * 115.54413 * 145.99058 * 20 10 9 37 37 H 1.09000 * 117.50502 * 0.02562 * 21 20 10 38 38 H 1.09000 * 117.50019 * 145.02126 * 21 20 10 39 39 H 1.08999 * 117.49912 * 214.97746 * 22 20 10 40 40 H 1.08999 * 117.50044 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5811 1.1966 -0.0005 5 6 4.3321 2.5032 -0.0011 6 7 4.5766 2.9280 1.3837 7 6 4.2765 0.0010 -0.0005 8 6 3.5914 -1.1979 0.0053 9 6 2.2021 -1.2024 -0.0005 10 7 1.5061 -2.4134 -0.0001 11 6 1.9382 -3.2686 1.1133 12 6 0.9303 -4.3693 1.3218 13 1 0.0209 -4.3861 0.7396 14 6 1.1692 -5.3549 2.2559 15 7 2.2768 -5.3346 2.9646 16 14 -0.0839 -6.7150 2.5197 17 1 -1.2383 -6.5079 1.6090 18 1 0.5445 -8.0295 2.2323 19 1 -0.5539 -6.6885 3.9281 20 6 1.6565 -3.1074 -1.2862 21 6 2.5119 -2.4301 -2.3586 22 6 0.9903 -2.4776 -2.5109 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5141 26 1 1.6585 2.1310 0.0004 27 1 5.2846 2.3745 -0.5152 28 1 3.7413 3.2615 -0.5149 29 1 5.0671 2.2131 1.8999 30 1 5.0796 3.8023 1.4102 31 1 5.3565 0.0053 -0.0005 32 1 4.1351 -2.1311 0.0097 33 1 2.0165 -2.6707 2.0214 34 1 2.9097 -3.7048 0.8807 35 1 2.4450 -6.0283 3.6215 36 1 1.6847 -4.1958 -1.2324 37 1 2.9635 -1.4697 -2.1100 38 1 3.1033 -3.0728 -3.0108 39 1 0.5806 -3.1514 -3.2633 40 1 0.4408 -1.5480 -2.3627 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723162871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:31 Heat of formation + Delta-G solvation = 57.211317 kcal Electronic energy + Delta-G solvation = -19705.088580 eV Core-core repulsion = 16906.351961 eV Total energy + Delta-G solvation = -2798.736619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98822 -37.38245 -34.71392 -33.61751 -32.14361 -32.08773 -29.38877 -26.84954 -26.17301 -24.18257 -22.58127 -21.98548 -21.51167 -20.54559 -19.12116 -16.58024 -16.17145 -15.77185 -15.70319 -15.22466 -14.64055 -14.35620 -14.09318 -13.82858 -13.12981 -12.96133 -12.63296 -12.56552 -12.36466 -11.87374 -11.65643 -11.60170 -11.48695 -10.98130 -10.90825 -10.78951 -10.69681 -10.59295 -10.09686 -9.97686 -9.66147 -9.29265 -8.80483 -8.45534 -8.29016 -7.92872 -7.29231 -6.04674 -4.06620 1.69025 1.81355 3.30251 3.38022 3.43158 4.04185 4.32994 4.45127 4.71563 4.78679 4.95455 5.10169 5.29436 5.33278 5.43202 5.46366 5.55712 5.57908 5.66379 5.73539 5.89959 6.07026 6.11884 6.21580 6.23740 6.29937 6.36332 6.57371 6.60008 6.69592 6.85185 6.87656 7.02018 7.07561 7.15171 7.32149 7.34298 7.43454 7.85083 8.05679 8.14883 8.58021 9.02310 9.57954 11.05700 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.005712 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.315152 B = 4900.563186 C = 5354.863383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.072 4.072 3 C -0.099 4.099 4 C -0.102 4.102 5 C 0.108 3.892 6 N -0.846 5.846 7 C -0.119 4.119 8 C -0.136 4.136 9 C 0.117 3.883 10 N -0.476 5.476 11 C 0.201 3.799 12 C -0.506 4.506 13 H 0.067 0.933 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.055 3.945 21 C -0.227 4.227 22 C -0.182 4.182 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.030 0.970 28 H 0.075 0.925 29 H 0.343 0.657 30 H 0.338 0.662 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.029 0.971 34 H 0.002 0.998 35 H 0.261 0.739 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.278 12.357 -8.067 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.073 4.073 3 C -0.119 4.119 4 C -0.103 4.103 5 C -0.023 4.023 6 N -0.376 5.376 7 C -0.138 4.138 8 C -0.157 4.157 9 C 0.023 3.977 10 N -0.195 5.195 11 C 0.078 3.922 12 C -0.545 4.545 13 H 0.085 0.915 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.053 4.053 21 C -0.265 4.265 22 C -0.220 4.220 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.135 0.865 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.156 0.844 30 H 0.150 0.850 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.047 0.953 34 H 0.020 0.980 35 H 0.071 0.929 36 H 0.142 0.858 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.057 12.367 -7.764 14.746 hybrid contribution 1.403 -1.104 -0.028 1.785 sum 3.459 11.263 -7.791 14.125 Atomic orbital electron populations 1.20642 0.90917 1.02054 1.02367 1.19852 0.96468 0.91476 0.99506 1.20704 0.93178 0.97036 1.00942 1.19559 0.93879 0.93802 1.03047 1.20619 0.97553 0.94401 0.89678 1.58717 1.57155 1.08129 1.13583 1.20772 0.98861 0.92019 1.02163 1.21771 0.95193 0.98127 1.00563 1.18892 0.90057 0.91935 0.96855 1.59629 1.54313 1.02542 1.03014 1.19808 0.95155 0.90732 0.86524 1.21186 1.05049 1.07692 1.20576 0.91528 1.24984 0.95590 0.98122 0.95837 1.69974 1.24932 1.34488 1.24373 0.86439 0.81443 0.81504 0.78049 1.19559 1.21135 1.21028 1.22598 1.00900 0.97534 0.84306 1.23602 0.93974 1.03653 1.05318 1.23029 0.94586 1.03140 1.01273 0.91460 0.93117 0.90078 0.86486 0.95181 0.90651 0.84388 0.84991 0.87190 0.86161 0.95300 0.97974 0.92943 0.85826 0.88441 0.89726 0.89398 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 9.75 36.01 0.35 -1.30 16 2 C -0.07 -1.25 5.90 -104.42 -0.62 -1.87 16 3 C -0.10 -1.53 9.35 -39.61 -0.37 -1.90 16 4 C -0.10 -1.47 5.39 -104.58 -0.56 -2.04 16 5 C 0.11 1.21 6.91 -4.97 -0.03 1.18 16 6 N -0.85 -9.10 9.61 -11.41 -0.11 -9.21 16 7 C -0.12 -1.83 9.69 -39.61 -0.38 -2.21 16 8 C -0.14 -2.48 6.80 -39.38 -0.27 -2.74 16 9 C 0.12 2.26 3.26 -83.79 -0.27 1.99 16 10 N -0.48 -10.22 3.57 -164.93 -0.59 -10.81 16 11 C 0.20 5.19 4.07 -4.98 -0.02 5.17 16 12 C -0.51 -14.01 8.56 -34.44 -0.29 -14.30 16 13 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 16 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.05 1.07 5.64 -67.72 -0.38 0.68 16 21 C -0.23 -3.75 9.11 -26.74 -0.24 -3.99 16 22 C -0.18 -2.97 10.26 -26.74 -0.27 -3.25 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.08 1.39 6.41 -51.93 -0.33 1.06 16 26 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 29 H 0.34 3.69 8.99 -39.29 -0.35 3.33 16 30 H 0.34 2.74 9.08 -39.29 -0.36 2.39 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.12 2.30 7.36 -52.49 -0.39 1.91 16 33 H 0.03 0.82 7.98 -51.93 -0.41 0.41 16 34 H 0.00 0.07 7.40 -51.93 -0.38 -0.32 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.12 2.59 7.56 -51.93 -0.39 2.20 16 37 H 0.10 1.66 5.40 -51.93 -0.28 1.38 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.48 7.08 -51.93 -0.37 1.11 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -29.55 325.65 -9.73 -39.28 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.19 Total: 8.20 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -3.47 Total: -23.11 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.04 Total: -45.75 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.55 -9.73 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723162871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.496 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds