Wall clock time and date at job start Mon Mar 30 2020 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38124 * 120.03732 * 2 1 4 4 C 1.38266 * 120.07292 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.92425 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46889 * 89.99918 * 5 4 3 7 7 C 1.38310 * 120.14777 * 359.97438 * 4 3 2 8 8 C 1.38082 * 120.07433 * 359.74756 * 7 4 3 9 9 C 1.38888 * 120.03238 * 180.02562 * 2 1 3 10 10 N 1.39674 * 120.07966 * 359.95542 * 9 2 1 11 11 C 1.46897 * 111.00050 * 234.30976 * 10 9 2 12 12 C 1.50698 * 109.47363 * 164.25209 * 11 10 9 13 13 H 1.07997 * 119.99723 * 355.49308 * 12 11 10 14 14 C 1.37872 * 120.00120 * 175.49739 * 12 11 10 15 15 N 1.31515 * 119.99872 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99773 * 179.72241 * 14 12 11 17 17 H 1.48496 * 109.47014 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47200 * 120.00022 * 16 14 12 19 19 H 1.48497 * 109.46766 * 239.99631 * 16 14 12 20 20 C 1.46907 * 110.99915 * 110.35347 * 10 9 2 21 21 C 1.52993 * 117.49823 * 0.28184 * 20 10 9 22 22 C 1.52993 * 117.49772 * 291.65978 * 20 10 9 23 23 H 1.09002 * 109.46788 * 269.98162 * 1 2 3 24 24 H 1.09001 * 109.47223 * 29.97682 * 1 2 3 25 25 H 1.08991 * 109.47595 * 149.97747 * 1 2 3 26 26 H 1.07996 * 119.96594 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.46848 * 209.99547 * 5 4 3 28 28 H 1.09000 * 109.46727 * 329.99949 * 5 4 3 29 29 H 1.00902 * 110.99654 * 56.04703 * 6 5 4 30 30 H 1.00905 * 110.99847 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.95843 * 180.02562 * 7 4 3 32 32 H 1.08000 * 120.03613 * 180.27541 * 8 7 4 33 33 H 1.09001 * 109.47092 * 44.24511 * 11 10 9 34 34 H 1.09001 * 109.47130 * 284.24961 * 11 10 9 35 35 H 0.97004 * 119.99519 * 180.02562 * 15 14 12 36 36 H 1.09001 * 115.54413 * 145.99058 * 20 10 9 37 37 H 1.09000 * 117.50502 * 0.02562 * 21 20 10 38 38 H 1.09000 * 117.50019 * 145.02126 * 21 20 10 39 39 H 1.08999 * 117.49912 * 214.97746 * 22 20 10 40 40 H 1.08999 * 117.50044 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5811 1.1966 -0.0005 5 6 4.3321 2.5032 -0.0011 6 7 4.5766 2.9280 1.3837 7 6 4.2765 0.0010 -0.0005 8 6 3.5914 -1.1979 0.0053 9 6 2.2021 -1.2024 -0.0005 10 7 1.5061 -2.4134 -0.0001 11 6 1.9382 -3.2686 1.1133 12 6 0.9303 -4.3693 1.3218 13 1 0.0209 -4.3861 0.7396 14 6 1.1692 -5.3549 2.2559 15 7 2.2768 -5.3346 2.9646 16 14 -0.0839 -6.7150 2.5197 17 1 -1.2383 -6.5079 1.6090 18 1 0.5445 -8.0295 2.2323 19 1 -0.5539 -6.6885 3.9281 20 6 1.6565 -3.1074 -1.2862 21 6 2.5119 -2.4301 -2.3586 22 6 0.9903 -2.4776 -2.5109 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5141 26 1 1.6585 2.1310 0.0004 27 1 5.2846 2.3745 -0.5152 28 1 3.7413 3.2615 -0.5149 29 1 5.0671 2.2131 1.8999 30 1 5.0796 3.8023 1.4102 31 1 5.3565 0.0053 -0.0005 32 1 4.1351 -2.1311 0.0097 33 1 2.0165 -2.6707 2.0214 34 1 2.9097 -3.7048 0.8807 35 1 2.4450 -6.0283 3.6215 36 1 1.6847 -4.1958 -1.2324 37 1 2.9635 -1.4697 -2.1100 38 1 3.1033 -3.0728 -3.0108 39 1 0.5806 -3.1514 -3.2633 40 1 0.4408 -1.5480 -2.3627 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723162871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:31 Heat of formation + Delta-G solvation = 38.936347 kcal Electronic energy + Delta-G solvation = -19705.881042 eV Core-core repulsion = 16906.351961 eV Total energy + Delta-G solvation = -2799.529081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38454 -38.72222 -35.85815 -35.40926 -33.89113 -33.37083 -30.79677 -28.61659 -27.51333 -25.44439 -24.38742 -23.43740 -22.83208 -21.93161 -20.47817 -18.54473 -17.39413 -17.35675 -17.10966 -16.50119 -16.25354 -15.74647 -15.21999 -15.19625 -14.47754 -14.36912 -14.21463 -14.01596 -13.73830 -13.53674 -13.22848 -12.97602 -12.80323 -12.70993 -12.60428 -12.15476 -12.13513 -12.08251 -11.89958 -11.51568 -11.36569 -11.15109 -10.62162 -9.63934 -9.59039 -9.25564 -8.94050 -8.21286 -6.32661 0.38773 0.50933 1.39886 1.40902 1.54865 2.38936 2.76991 2.90680 3.10218 3.27059 3.84234 3.90291 3.97726 4.02428 4.07361 4.15356 4.30230 4.42890 4.44992 4.65910 4.72274 4.76060 4.84355 4.86461 4.91460 4.93447 5.06877 5.09305 5.14922 5.19116 5.29601 5.40421 5.55837 5.65631 5.67269 5.80733 6.04642 6.11400 6.21958 6.26417 6.62502 6.83587 6.84648 7.37430 8.89130 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.005712 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.315152 B = 4900.563186 C = 5354.863383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.083 4.083 3 C -0.098 4.098 4 C -0.092 4.092 5 C 0.111 3.889 6 N -0.856 5.856 7 C -0.116 4.116 8 C -0.153 4.153 9 C 0.085 3.915 10 N -0.475 5.475 11 C 0.225 3.775 12 C -0.519 4.519 13 H 0.064 0.936 14 C 0.003 3.997 15 N -0.935 5.935 16 Si 0.970 3.030 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.279 1.279 20 C 0.016 3.984 21 C -0.207 4.207 22 C -0.156 4.156 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.143 0.857 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.342 0.658 30 H 0.354 0.646 31 H 0.133 0.867 32 H 0.096 0.904 33 H -0.009 1.009 34 H -0.029 1.029 35 H 0.264 0.736 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.813 14.133 -9.336 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.084 4.084 3 C -0.117 4.117 4 C -0.093 4.093 5 C -0.019 4.019 6 N -0.387 5.387 7 C -0.136 4.136 8 C -0.173 4.173 9 C -0.010 4.010 10 N -0.194 5.194 11 C 0.100 3.900 12 C -0.558 4.558 13 H 0.082 0.918 14 C -0.195 4.195 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.205 1.205 20 C -0.092 4.092 21 C -0.245 4.245 22 C -0.194 4.194 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.161 0.839 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.155 0.845 30 H 0.169 0.831 31 H 0.150 0.850 32 H 0.115 0.885 33 H 0.009 0.991 34 H -0.011 1.011 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.594 14.172 -9.058 16.894 hybrid contribution 1.627 -1.556 0.353 2.278 sum 3.221 12.616 -8.705 15.663 Atomic orbital electron populations 1.20616 0.90180 1.02834 1.01930 1.20064 0.97237 0.91438 0.99646 1.21017 0.93778 0.97091 0.99800 1.19955 0.93869 0.94919 1.00539 1.20637 0.98153 0.92791 0.90331 1.58681 1.57828 1.08996 1.13204 1.21001 1.00032 0.91356 1.01170 1.21664 0.94967 0.98447 1.02226 1.19038 0.90644 0.91650 0.99622 1.59514 1.54598 1.02698 1.02567 1.19299 0.93441 0.90334 0.86949 1.21446 1.05193 1.08487 1.20632 0.91812 1.25906 0.97562 1.00661 0.95333 1.70106 1.26888 1.35560 1.25035 0.85318 0.78917 0.78211 0.78083 1.18618 1.20302 1.20490 1.22527 1.05311 0.96523 0.84794 1.23562 0.94517 1.03146 1.03298 1.23086 0.94433 1.02985 0.98892 0.92465 0.89850 0.91729 0.83946 0.93489 0.89131 0.84510 0.83123 0.84959 0.88546 0.99060 1.01074 0.92676 0.88384 0.88679 0.88128 0.87141 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.09 9.75 71.24 0.69 -2.39 16 2 C -0.08 -2.84 5.90 -19.73 -0.12 -2.96 16 3 C -0.10 -2.79 9.35 22.25 0.21 -2.58 16 4 C -0.09 -2.44 5.39 -19.84 -0.11 -2.55 16 5 C 0.11 2.10 6.91 85.56 0.59 2.69 16 6 N -0.86 -15.83 9.61 -190.00 -1.83 -17.66 16 7 C -0.12 -3.48 9.69 22.25 0.22 -3.26 16 8 C -0.15 -5.75 6.80 22.40 0.15 -5.59 16 9 C 0.08 3.37 3.26 38.21 0.12 3.49 16 10 N -0.47 -21.43 3.57 -675.72 -2.41 -23.85 16 11 C 0.22 12.42 4.07 85.56 0.35 12.77 16 12 C -0.52 -30.03 8.56 25.60 0.22 -29.81 16 13 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 14 C 0.00 0.19 5.46 84.65 0.46 0.65 16 15 N -0.94 -57.21 13.29 21.45 0.28 -56.93 16 16 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 C 0.02 0.66 5.64 44.91 0.25 0.91 16 21 C -0.21 -6.77 9.11 30.59 0.28 -6.49 16 22 C -0.16 -4.93 10.26 30.59 0.31 -4.62 16 23 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 24 H 0.08 2.00 8.09 -2.39 -0.02 1.98 16 25 H 0.06 2.21 6.41 -2.39 -0.02 2.19 16 26 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.05 0.76 8.08 -2.39 -0.02 0.74 16 28 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 29 H 0.34 6.55 8.99 -89.69 -0.81 5.75 16 30 H 0.35 4.62 9.08 -89.69 -0.81 3.81 16 31 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 32 H 0.10 3.99 7.36 -2.91 -0.02 3.97 16 33 H -0.01 -0.53 7.98 -2.39 -0.02 -0.55 16 34 H -0.03 -1.71 7.40 -2.39 -0.02 -1.72 16 35 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.10 4.38 7.56 -2.39 -0.02 4.36 16 37 H 0.09 3.20 5.40 -2.39 -0.01 3.19 16 38 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.09 2.94 7.08 -2.39 -0.02 2.92 16 Total: -1.00 -66.61 325.65 1.13 -65.48 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.58 Total: 25.79 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 3.64 Total: -39.73 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -3.95 Total: -98.43 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.61 1.13 -65.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723162871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.412 kcal (2) G-P(sol) polarization free energy of solvation -66.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds