Wall clock time and date at job start Mon Mar 30 2020 06:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38133 * 119.96153 * 2 1 4 4 C 1.38891 * 119.92553 * 180.22834 * 3 2 1 5 5 N 1.39665 * 120.07483 * 179.78749 * 4 3 2 6 6 C 1.46498 * 120.00503 * 359.72645 * 5 4 3 7 7 C 1.50698 * 109.47237 * 270.00297 * 6 5 4 8 8 H 1.08007 * 120.00063 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00327 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99596 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00090 * 179.97438 * 9 7 6 12 12 H 1.48491 * 109.47106 * 59.99606 * 11 9 7 13 13 H 1.48500 * 109.47086 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.46878 * 299.99705 * 11 9 7 15 15 C 1.46509 * 119.99974 * 179.72340 * 5 4 3 16 16 C 1.53000 * 117.49680 * 120.00163 * 15 5 4 17 17 C 1.52997 * 117.49724 * 188.62650 * 15 5 4 18 18 C 1.38939 * 119.84584 * 359.51618 * 4 3 2 19 19 C 1.38078 * 119.92932 * 0.25091 * 18 4 3 20 20 C 1.38259 * 119.96634 * 179.73959 * 2 1 3 21 21 C 1.50705 * 119.92246 * 359.97438 * 20 2 1 22 22 N 1.46903 * 109.46835 * 80.02085 * 21 20 2 23 23 H 1.08998 * 109.47602 * 270.25558 * 1 2 3 24 24 H 1.09004 * 109.47205 * 30.25932 * 1 2 3 25 25 H 1.09001 * 109.46965 * 150.25725 * 1 2 3 26 26 H 1.07997 * 120.03832 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.46517 * 29.99562 * 6 5 4 28 28 H 1.08996 * 109.47705 * 149.99549 * 6 5 4 29 29 H 0.97002 * 119.99495 * 180.02562 * 10 9 7 30 30 H 1.09002 * 115.55964 * 334.30991 * 15 5 4 31 31 H 1.08990 * 117.49990 * 359.97438 * 16 15 5 32 32 H 1.09004 * 117.49237 * 214.97837 * 16 15 5 33 33 H 1.08999 * 117.49685 * 145.02315 * 17 15 5 34 34 H 1.08997 * 117.50044 * 359.97438 * 17 15 5 35 35 H 1.07998 * 120.03168 * 180.23253 * 18 4 3 36 36 H 1.07997 * 119.96299 * 180.02562 * 19 18 4 37 37 H 1.09003 * 109.47143 * 200.02009 * 21 20 2 38 38 H 1.08998 * 109.46913 * 320.02070 * 21 20 2 39 39 H 1.00904 * 110.99812 * 180.02562 * 22 21 20 40 40 H 1.00900 * 110.99931 * 303.95213 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1967 0.0000 4 6 3.5857 1.1959 -0.0048 5 7 4.2864 2.4040 -0.0093 6 6 3.5564 3.6742 -0.0150 7 6 3.3070 4.1039 -1.4377 8 1 3.6576 3.4922 -2.2560 9 6 2.6313 5.2779 -1.6950 10 7 2.2040 6.0224 -0.6987 11 14 2.3228 5.8108 -3.4587 12 1 1.5196 4.7744 -4.1556 13 1 1.5817 7.0976 -3.4645 14 1 3.6215 5.9837 -4.1578 15 6 5.7514 2.4012 -0.0082 16 6 6.4600 3.0736 -1.1858 17 6 6.4603 3.7425 0.1903 18 6 4.2764 -0.0097 0.0006 19 6 3.5806 -1.2023 0.0055 20 6 2.1975 -1.1978 0.0054 21 6 1.4415 -2.5014 0.0120 22 7 0.9877 -2.8110 -1.3505 23 1 -0.3634 0.0046 1.0276 24 1 -0.3634 0.8877 -0.5179 25 1 -0.3633 -0.8923 -0.5098 26 1 1.6568 2.1320 0.0004 27 1 2.6034 3.5478 0.4987 28 1 4.1465 4.4348 0.4961 29 1 1.7283 6.8482 -0.8798 30 1 6.2197 1.5160 0.4221 31 1 5.8362 3.5176 -1.9615 32 1 7.3945 2.6306 -1.5303 33 1 7.3950 3.7396 0.7511 34 1 5.8367 4.6270 0.3197 35 1 5.3564 -0.0138 0.0007 36 1 4.1170 -2.1397 0.0101 37 1 2.0946 -3.2985 0.3673 38 1 0.5783 -2.4175 0.6722 39 1 0.4773 -3.6812 -1.3726 40 1 0.4329 -2.0570 -1.7269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723171876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:20 Heat of formation + Delta-G solvation = 54.982712 kcal Electronic energy + Delta-G solvation = -19573.658415 eV Core-core repulsion = 16774.825157 eV Total energy + Delta-G solvation = -2798.833258 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.33848 -37.51601 -34.81791 -33.32558 -32.36475 -31.79338 -28.92671 -27.28011 -26.44883 -23.93932 -23.04808 -21.78333 -21.02047 -20.90484 -18.61420 -16.84408 -16.44722 -16.03077 -15.50868 -14.69101 -14.57399 -14.18089 -13.91998 -13.70355 -13.29677 -13.12944 -12.77520 -12.46742 -12.09657 -11.96223 -11.86145 -11.68661 -11.31776 -11.02507 -10.92554 -10.58798 -10.54384 -10.43437 -10.22362 -9.93373 -9.71041 -9.50328 -8.75078 -8.50620 -8.48978 -8.06621 -6.42420 -6.00596 -4.17124 2.07868 2.23921 3.27423 3.31786 3.35459 3.96767 4.30597 4.38922 4.61476 4.95590 5.20758 5.23955 5.29327 5.41583 5.48499 5.53191 5.59437 5.63072 5.72483 5.82787 5.91209 6.01928 6.07278 6.16779 6.21066 6.39957 6.53210 6.64103 6.68776 6.86763 7.00153 7.05897 7.17089 7.23394 7.30570 7.36881 7.54957 7.63173 7.80918 8.15152 8.28019 8.50981 8.91346 9.49074 10.94928 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.006745 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.502074 B = 4150.069678 C = 5175.566038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.039 4.039 3 C -0.185 4.185 4 C 0.246 3.754 5 N -0.582 5.582 6 C 0.246 3.754 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.063 3.937 10 N -0.895 5.895 11 Si 0.893 3.107 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.090 3.910 16 C -0.198 4.198 17 C -0.188 4.188 18 C -0.220 4.220 19 C -0.055 4.055 20 C -0.169 4.169 21 C 0.116 3.884 22 N -0.847 5.847 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.131 0.869 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.332 0.668 40 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.838 -11.769 2.658 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.040 4.040 3 C -0.208 4.208 4 C 0.140 3.860 5 N -0.286 5.286 6 C 0.127 3.873 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.721 3.279 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.202 1.202 15 C -0.017 4.017 16 C -0.237 4.237 17 C -0.226 4.226 18 C -0.243 4.243 19 C -0.075 4.075 20 C -0.172 4.172 21 C -0.013 4.013 22 N -0.378 5.378 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.149 0.851 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.144 0.856 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.592 -11.400 2.537 11.787 hybrid contribution -1.046 0.596 -0.690 1.387 sum 0.546 -10.804 1.847 10.974 Atomic orbital electron populations 1.20799 0.92479 1.01982 1.01677 1.19368 0.94767 0.92320 0.97541 1.20692 0.92458 0.98128 1.09495 1.17824 0.91187 0.85760 0.91198 1.46577 1.02306 1.04667 1.75048 1.19344 0.91804 0.79081 0.97116 1.21524 1.36285 1.06214 0.92531 0.92226 1.24938 0.95449 0.96333 0.97238 1.69918 1.38412 1.14258 1.30843 0.86625 0.78494 0.77839 0.84942 1.20132 1.21235 1.20207 1.21321 0.81626 0.96224 1.02482 1.23455 1.01930 1.05044 0.93234 1.23285 1.01547 0.97684 1.00094 1.20539 0.98985 0.91359 1.13417 1.20497 0.93124 0.96597 0.97238 1.19076 0.93515 0.93070 1.11511 1.20463 0.97034 0.94985 0.88851 1.58837 1.48797 1.07501 1.22681 0.91692 0.91326 0.92700 0.85080 0.94703 0.94571 0.92632 0.87103 0.87212 0.89857 0.89383 0.87265 0.86963 0.87305 0.91328 0.95557 0.85570 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.22 36.00 0.33 -1.27 16 2 C -0.04 -0.67 5.87 -104.66 -0.61 -1.29 16 3 C -0.19 -3.79 8.86 -39.38 -0.35 -4.14 16 4 C 0.25 5.07 6.55 -83.79 -0.55 4.52 16 5 N -0.58 -12.46 2.93 -165.54 -0.48 -12.95 16 6 C 0.25 6.07 4.53 -5.20 -0.02 6.04 16 7 C -0.53 -14.07 8.39 -34.44 -0.29 -14.36 16 8 H 0.06 1.64 7.32 -52.48 -0.38 1.26 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.90 -25.33 13.29 55.43 0.74 -24.59 16 11 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 15 C 0.09 1.64 5.97 -67.93 -0.41 1.24 16 16 C -0.20 -3.53 10.19 -26.73 -0.27 -3.80 16 17 C -0.19 -3.28 9.80 -26.73 -0.26 -3.54 16 18 C -0.22 -3.97 9.29 -39.38 -0.37 -4.33 16 19 C -0.06 -0.91 9.66 -39.61 -0.38 -1.29 16 20 C -0.17 -2.73 5.40 -104.59 -0.56 -3.29 16 21 C 0.12 1.50 6.14 -4.97 -0.03 1.47 16 22 N -0.85 -10.32 9.59 -11.40 -0.11 -10.43 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 25 H 0.05 0.66 5.25 -51.93 -0.27 0.39 16 26 H 0.13 2.95 6.14 -52.49 -0.32 2.62 16 27 H 0.04 0.92 6.19 -51.93 -0.32 0.60 16 28 H 0.04 0.93 5.80 -51.93 -0.30 0.63 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.11 1.77 6.42 -51.93 -0.33 1.44 16 31 H 0.11 2.30 6.73 -51.93 -0.35 1.95 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.11 2.20 6.02 -51.93 -0.31 1.89 16 35 H 0.11 1.84 6.13 -52.49 -0.32 1.51 16 36 H 0.11 1.54 8.03 -52.49 -0.42 1.12 16 37 H 0.07 0.82 8.00 -51.93 -0.42 0.41 16 38 H 0.03 0.32 7.27 -51.93 -0.38 -0.06 16 39 H 0.33 3.13 9.08 -39.29 -0.36 2.78 16 40 H 0.34 4.19 7.23 -39.29 -0.28 3.91 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -28.52 318.42 -9.55 -38.07 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -5.60 Total: 11.30 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -3.87 Total: -22.43 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.14 Total: -47.96 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.52 -9.55 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723171876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.057 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds