Wall clock time and date at job start Mon Mar 30 2020 06:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38133 * 119.96153 * 2 1 4 4 C 1.38891 * 119.92553 * 180.22834 * 3 2 1 5 5 N 1.39665 * 120.07483 * 179.78749 * 4 3 2 6 6 C 1.46498 * 120.00503 * 359.72645 * 5 4 3 7 7 C 1.50698 * 109.47237 * 270.00297 * 6 5 4 8 8 H 1.08007 * 120.00063 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00327 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99596 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00090 * 179.97438 * 9 7 6 12 12 H 1.48491 * 109.47106 * 59.99606 * 11 9 7 13 13 H 1.48500 * 109.47086 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.46878 * 299.99705 * 11 9 7 15 15 C 1.46509 * 119.99974 * 179.72340 * 5 4 3 16 16 C 1.53000 * 117.49680 * 120.00163 * 15 5 4 17 17 C 1.52997 * 117.49724 * 188.62650 * 15 5 4 18 18 C 1.38939 * 119.84584 * 359.51618 * 4 3 2 19 19 C 1.38078 * 119.92932 * 0.25091 * 18 4 3 20 20 C 1.38259 * 119.96634 * 179.73959 * 2 1 3 21 21 C 1.50705 * 119.92246 * 359.97438 * 20 2 1 22 22 N 1.46903 * 109.46835 * 80.02085 * 21 20 2 23 23 H 1.08998 * 109.47602 * 270.25558 * 1 2 3 24 24 H 1.09004 * 109.47205 * 30.25932 * 1 2 3 25 25 H 1.09001 * 109.46965 * 150.25725 * 1 2 3 26 26 H 1.07997 * 120.03832 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.46517 * 29.99562 * 6 5 4 28 28 H 1.08996 * 109.47705 * 149.99549 * 6 5 4 29 29 H 0.97002 * 119.99495 * 180.02562 * 10 9 7 30 30 H 1.09002 * 115.55964 * 334.30991 * 15 5 4 31 31 H 1.08990 * 117.49990 * 359.97438 * 16 15 5 32 32 H 1.09004 * 117.49237 * 214.97837 * 16 15 5 33 33 H 1.08999 * 117.49685 * 145.02315 * 17 15 5 34 34 H 1.08997 * 117.50044 * 359.97438 * 17 15 5 35 35 H 1.07998 * 120.03168 * 180.23253 * 18 4 3 36 36 H 1.07997 * 119.96299 * 180.02562 * 19 18 4 37 37 H 1.09003 * 109.47143 * 200.02009 * 21 20 2 38 38 H 1.08998 * 109.46913 * 320.02070 * 21 20 2 39 39 H 1.00904 * 110.99812 * 180.02562 * 22 21 20 40 40 H 1.00900 * 110.99931 * 303.95213 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1967 0.0000 4 6 3.5857 1.1959 -0.0048 5 7 4.2864 2.4040 -0.0093 6 6 3.5564 3.6742 -0.0150 7 6 3.3070 4.1039 -1.4377 8 1 3.6576 3.4922 -2.2560 9 6 2.6313 5.2779 -1.6950 10 7 2.2040 6.0224 -0.6987 11 14 2.3228 5.8108 -3.4587 12 1 1.5196 4.7744 -4.1556 13 1 1.5817 7.0976 -3.4645 14 1 3.6215 5.9837 -4.1578 15 6 5.7514 2.4012 -0.0082 16 6 6.4600 3.0736 -1.1858 17 6 6.4603 3.7425 0.1903 18 6 4.2764 -0.0097 0.0006 19 6 3.5806 -1.2023 0.0055 20 6 2.1975 -1.1978 0.0054 21 6 1.4415 -2.5014 0.0120 22 7 0.9877 -2.8110 -1.3505 23 1 -0.3634 0.0046 1.0276 24 1 -0.3634 0.8877 -0.5179 25 1 -0.3633 -0.8923 -0.5098 26 1 1.6568 2.1320 0.0004 27 1 2.6034 3.5478 0.4987 28 1 4.1465 4.4348 0.4961 29 1 1.7283 6.8482 -0.8798 30 1 6.2197 1.5160 0.4221 31 1 5.8362 3.5176 -1.9615 32 1 7.3945 2.6306 -1.5303 33 1 7.3950 3.7396 0.7511 34 1 5.8367 4.6270 0.3197 35 1 5.3564 -0.0138 0.0007 36 1 4.1170 -2.1397 0.0101 37 1 2.0946 -3.2985 0.3673 38 1 0.5783 -2.4175 0.6722 39 1 0.4773 -3.6812 -1.3726 40 1 0.4329 -2.0570 -1.7269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723171876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:20 Heat of formation + Delta-G solvation = 38.174733 kcal Electronic energy + Delta-G solvation = -19574.387264 eV Core-core repulsion = 16774.825157 eV Total energy + Delta-G solvation = -2799.562107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76206 -38.95146 -36.07977 -35.17427 -33.83394 -33.22699 -30.48275 -28.91734 -27.84608 -25.52595 -24.54607 -23.20724 -22.41457 -22.38191 -20.08162 -18.59210 -18.28456 -17.23670 -16.95617 -16.45159 -15.77842 -15.50883 -15.40658 -14.97041 -14.81252 -14.58238 -14.30905 -13.83680 -13.61677 -13.46710 -13.21740 -13.13991 -12.92953 -12.75745 -12.66102 -12.17765 -12.05222 -12.00756 -11.81309 -11.49093 -11.42218 -11.14708 -10.61986 -10.18050 -9.49573 -9.45968 -8.34856 -7.75355 -6.35038 0.67582 0.83687 1.34484 1.35736 1.43850 2.30404 2.48815 2.92632 3.06528 3.19708 3.95649 3.96905 3.99555 4.09601 4.14715 4.22388 4.29334 4.42375 4.48227 4.64087 4.72308 4.77243 4.81151 4.84341 4.96035 5.02331 5.08709 5.10419 5.19209 5.27759 5.37973 5.45111 5.60000 5.71119 5.72413 5.95113 6.08185 6.21343 6.31969 6.51332 6.71018 6.84231 6.96135 7.35388 8.83320 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.006745 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.502074 B = 4150.069678 C = 5175.566038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.043 4.043 3 C -0.217 4.217 4 C 0.217 3.783 5 N -0.597 5.597 6 C 0.266 3.734 7 C -0.529 4.529 8 H 0.046 0.954 9 C 0.015 3.985 10 N -0.926 5.926 11 Si 0.954 3.046 12 H -0.275 1.275 13 H -0.279 1.279 14 H -0.270 1.270 15 C 0.080 3.920 16 C -0.196 4.196 17 C -0.183 4.183 18 C -0.219 4.219 19 C -0.055 4.055 20 C -0.163 4.163 21 C 0.119 3.881 22 N -0.855 5.855 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.006 0.994 28 H 0.019 0.981 29 H 0.266 0.734 30 H 0.143 0.857 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.351 0.649 40 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 -14.568 2.202 14.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.045 4.045 3 C -0.239 4.239 4 C 0.113 3.887 5 N -0.302 5.302 6 C 0.145 3.855 7 C -0.567 4.567 8 H 0.064 0.936 9 C -0.184 4.184 10 N -0.566 5.566 11 Si 0.779 3.221 12 H -0.200 1.200 13 H -0.204 1.204 14 H -0.195 1.195 15 C -0.025 4.025 16 C -0.235 4.235 17 C -0.220 4.220 18 C -0.241 4.241 19 C -0.074 4.074 20 C -0.166 4.166 21 C -0.010 4.010 22 N -0.387 5.387 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.024 0.976 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.091 0.909 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.165 0.835 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.331 -14.242 2.079 14.580 hybrid contribution -1.312 1.350 -0.519 1.953 sum 1.019 -12.891 1.560 13.025 Atomic orbital electron populations 1.20831 0.90517 1.02603 1.02736 1.19690 0.96381 0.91801 0.96591 1.20630 0.92979 0.97995 1.12328 1.18138 0.91416 0.86352 0.92833 1.46422 1.03560 1.03728 1.76489 1.18799 0.90644 0.80584 0.95495 1.21653 1.35917 1.06067 0.93100 0.93570 1.25693 0.95281 0.96434 1.01020 1.70023 1.39198 1.14672 1.32714 0.85675 0.78524 0.77562 0.80358 1.20006 1.20380 1.19539 1.21689 0.80037 0.97723 1.03042 1.23405 1.02724 1.05071 0.92266 1.23261 1.02391 0.95934 1.00457 1.20769 0.99989 0.90713 1.12663 1.20928 0.93499 0.97233 0.95748 1.19524 0.93926 0.94013 1.09139 1.20475 0.97535 0.93407 0.89631 1.58776 1.49441 1.08419 1.22103 0.90317 0.92686 0.90088 0.88788 0.97589 0.96348 0.92499 0.83959 0.91075 0.86182 0.85499 0.90882 0.85099 0.84085 0.89659 0.94171 0.83532 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.05 9.22 71.23 0.66 -2.40 16 2 C -0.04 -1.50 5.87 -19.89 -0.12 -1.61 16 3 C -0.22 -9.29 8.86 22.40 0.20 -9.09 16 4 C 0.22 9.11 6.55 38.22 0.25 9.36 16 5 N -0.60 -26.53 2.93 -677.66 -1.98 -28.52 16 6 C 0.27 14.06 4.53 85.63 0.39 14.45 16 7 C -0.53 -29.78 8.39 25.60 0.21 -29.57 16 8 H 0.05 2.67 7.32 -2.91 -0.02 2.65 16 9 C 0.01 0.84 5.46 84.65 0.46 1.30 16 10 N -0.93 -54.66 13.29 21.45 0.28 -54.37 16 11 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 15 C 0.08 2.90 5.97 44.99 0.27 3.17 16 16 C -0.20 -6.89 10.19 30.60 0.31 -6.58 16 17 C -0.18 -6.33 9.80 30.60 0.30 -6.03 16 18 C -0.22 -7.54 9.29 22.40 0.21 -7.33 16 19 C -0.06 -1.65 9.66 22.25 0.21 -1.44 16 20 C -0.16 -4.89 5.40 -19.84 -0.11 -4.99 16 21 C 0.12 2.63 6.14 85.56 0.53 3.15 16 22 N -0.85 -17.83 9.59 -189.99 -1.82 -19.65 16 23 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.05 1.66 8.09 -2.38 -0.02 1.64 16 25 H 0.08 1.79 5.25 -2.39 -0.01 1.77 16 26 H 0.09 4.65 6.14 -2.91 -0.02 4.63 16 27 H 0.01 0.36 6.19 -2.39 -0.01 0.34 16 28 H 0.02 1.03 5.80 -2.39 -0.01 1.02 16 29 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.14 4.19 6.42 -2.39 -0.02 4.18 16 31 H 0.07 3.08 6.73 -2.39 -0.02 3.06 16 32 H 0.12 3.30 8.14 -2.38 -0.02 3.28 16 33 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.07 3.09 6.02 -2.39 -0.01 3.08 16 35 H 0.13 3.92 6.13 -2.91 -0.02 3.90 16 36 H 0.14 3.33 8.03 -2.91 -0.02 3.31 16 37 H 0.09 1.64 8.00 -2.39 -0.02 1.62 16 38 H 0.04 0.80 7.27 -2.39 -0.02 0.78 16 39 H 0.35 5.28 9.08 -89.69 -0.81 4.47 16 40 H 0.34 7.36 7.23 -89.69 -0.65 6.71 16 Total: -1.00 -65.05 318.42 1.89 -63.17 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -0.39 Total: 30.21 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 3.78 Total: -37.62 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -3.52 Total: -102.54 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -65.05 1.89 -63.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723171876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.340 kcal (2) G-P(sol) polarization free energy of solvation -65.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds