Wall clock time and date at job start Mon Mar 30 2020 07:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38669 * 120.78661 * 2 1 4 4 C 1.38182 * 119.16376 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.62014 * 179.97438 * 4 3 2 6 6 N 1.31888 * 120.76044 * 359.75750 * 4 3 2 7 7 C 1.31851 * 121.72838 * 0.51211 * 6 4 3 8 8 C 1.50699 * 119.62017 * 179.75892 * 7 6 4 9 9 N 1.46909 * 109.47027 * 274.72944 * 8 7 6 10 10 C 1.46898 * 111.00060 * 170.00060 * 9 8 7 11 11 C 1.50704 * 109.46895 * 290.10302 * 10 9 8 12 12 H 1.08001 * 119.99972 * 357.18457 * 11 10 9 13 13 C 1.37881 * 119.99802 * 177.18555 * 11 10 9 14 14 N 1.31514 * 119.99887 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00128 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47184 * 89.99798 * 15 13 11 17 17 H 1.48499 * 109.47335 * 210.00148 * 15 13 11 18 18 H 1.48505 * 109.46948 * 329.99698 * 15 13 11 19 19 C 1.46897 * 110.99701 * 293.95235 * 9 8 7 20 20 C 1.53002 * 117.49815 * 242.23954 * 19 9 8 21 21 C 1.53002 * 117.49950 * 173.61551 * 19 9 8 22 22 C 1.38228 * 120.76115 * 359.48330 * 7 6 4 23 23 H 1.09005 * 109.47057 * 270.01416 * 1 2 3 24 24 H 1.08999 * 109.47810 * 30.01366 * 1 2 3 25 25 H 1.08999 * 109.47469 * 150.02211 * 1 2 3 26 26 H 1.07999 * 120.42161 * 0.02562 * 3 2 1 27 27 H 1.09008 * 109.46473 * 90.00681 * 5 4 3 28 28 H 1.08994 * 109.47448 * 210.00655 * 5 4 3 29 29 H 1.08996 * 109.47314 * 330.00855 * 5 4 3 30 30 H 1.08996 * 109.47227 * 154.73131 * 8 7 6 31 31 H 1.09000 * 109.47062 * 34.72355 * 8 7 6 32 32 H 1.08996 * 109.47131 * 170.10654 * 10 9 8 33 33 H 1.08996 * 109.47098 * 50.10052 * 10 9 8 34 34 H 0.96999 * 120.00267 * 180.02562 * 14 13 11 35 35 H 1.09007 * 115.55372 * 27.94949 * 19 9 8 36 36 H 1.08999 * 117.49841 * 0.02562 * 20 19 9 37 37 H 1.08996 * 117.49847 * 145.02382 * 20 19 9 38 38 H 1.09003 * 117.50041 * 214.97848 * 21 19 9 39 39 H 1.09004 * 117.49694 * 359.97438 * 21 19 9 40 40 H 1.08001 * 120.41737 * 180.27522 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 6 4.3797 2.4406 0.0000 6 7 4.2402 0.0002 0.0058 7 6 3.5983 -1.1515 0.0008 8 6 4.3801 -2.4399 0.0017 9 7 4.7378 -2.7966 -1.3778 10 6 5.6956 -3.9101 -1.4021 11 6 7.0295 -3.4367 -0.8848 12 1 7.1662 -2.4006 -0.6124 13 6 8.0755 -4.3263 -0.7594 14 7 9.2394 -3.9132 -0.3075 15 14 7.8393 -6.1181 -1.2313 16 1 8.1812 -6.3017 -2.6647 17 1 8.7249 -6.9704 -0.3980 18 1 6.4238 -6.5068 -1.0064 19 6 3.5401 -3.1151 -2.1665 20 6 3.4210 -4.5330 -2.7288 21 6 3.7261 -3.3619 -3.6650 22 6 2.2166 -1.1908 0.0004 23 1 -0.3633 0.0003 1.0277 24 1 -0.3635 0.8898 -0.5140 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6966 2.1378 0.0004 27 1 4.5678 2.7518 1.0276 28 1 5.3292 2.2894 -0.5135 29 1 3.8074 3.2125 -0.5144 30 1 3.7721 -3.2334 0.4362 31 1 5.2881 -2.3135 0.5913 32 1 5.8093 -4.2693 -2.4249 33 1 5.3279 -4.7195 -0.7715 34 1 9.9754 -4.5389 -0.2196 35 1 2.6222 -2.6208 -1.8481 36 1 4.2311 -5.2297 -2.5131 37 1 2.4247 -4.9720 -2.7802 38 1 2.9305 -3.0305 -4.3323 39 1 4.7371 -3.2876 -4.0656 40 1 1.6965 -2.1374 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723614471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:12 Heat of formation + Delta-G solvation = 64.147211 kcal Electronic energy + Delta-G solvation = -19455.210298 eV Core-core repulsion = 16656.774442 eV Total energy + Delta-G solvation = -2798.435856 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23627 -38.13827 -34.22358 -33.91098 -32.86135 -31.59944 -28.56345 -27.66515 -27.06177 -25.23561 -22.44565 -21.78456 -21.44839 -20.83156 -18.84975 -17.11158 -16.34823 -15.90111 -15.71189 -15.09761 -14.45257 -14.30646 -14.06449 -13.37749 -13.28270 -13.09946 -12.78411 -12.71108 -12.54536 -12.22215 -12.02251 -11.91446 -11.71293 -11.45504 -11.12805 -10.96379 -10.71158 -10.41162 -10.23532 -9.87736 -9.77284 -9.27397 -9.17151 -9.01811 -8.59665 -8.51996 -7.24333 -6.01102 -3.98394 1.32363 1.47852 3.29415 3.36852 3.37564 3.90546 4.31760 4.43908 4.48266 4.66807 4.72663 4.84925 5.17081 5.25600 5.29601 5.36841 5.38232 5.40780 5.42924 5.51807 5.62110 5.65810 5.72727 5.78539 5.88048 5.99807 6.02336 6.07076 6.20368 6.35865 6.40204 6.44034 6.54462 6.60631 6.82848 6.93708 6.99401 7.61350 7.86816 8.02055 8.43787 8.68618 9.12351 9.60021 11.12025 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.005917 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.499080 B = 4730.944011 C = 5570.690503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.044 4.044 3 C -0.188 4.188 4 C 0.132 3.868 5 C -0.103 4.103 6 N -0.461 5.461 7 C 0.165 3.835 8 C 0.108 3.892 9 N -0.484 5.484 10 C 0.161 3.839 11 C -0.509 4.509 12 H 0.085 0.915 13 C 0.070 3.930 14 N -0.898 5.898 15 Si 0.869 3.131 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.019 3.981 20 C -0.226 4.226 21 C -0.174 4.174 22 C -0.184 4.184 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.127 0.873 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.110 0.890 32 H 0.030 0.970 33 H -0.005 1.005 34 H 0.263 0.737 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.614 7.056 -0.121 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.052 4.052 3 C -0.208 4.208 4 C -0.006 4.006 5 C -0.160 4.160 6 N -0.172 5.172 7 C 0.026 3.974 8 C -0.020 4.020 9 N -0.205 5.205 10 C 0.035 3.965 11 C -0.547 4.547 12 H 0.103 0.897 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.697 3.303 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.091 4.091 20 C -0.265 4.265 21 C -0.212 4.212 22 C -0.204 4.204 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.145 0.855 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.048 0.952 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.257 7.405 -0.260 17.866 hybrid contribution -1.333 -1.755 -0.011 2.204 sum -17.590 5.649 -0.271 18.477 Atomic orbital electron populations 1.20780 0.90684 1.02956 1.02510 1.20209 0.96288 0.92998 0.95720 1.21729 0.94915 0.98238 1.05939 1.21325 0.90958 0.94264 0.94084 1.20696 1.00569 0.91957 1.02818 1.67445 1.40837 0.97375 1.11501 1.21360 0.90371 0.94031 0.91622 1.20933 0.99774 0.89565 0.91722 1.61743 1.08940 1.40201 1.09623 1.20312 0.91782 0.87853 0.96537 1.21084 0.92799 0.98303 1.42549 0.89668 1.24875 0.95121 0.98173 0.94977 1.69895 1.02168 1.35071 1.46594 0.86953 0.78407 0.86052 0.78910 1.20165 1.21167 1.19225 1.22782 0.95068 0.96349 0.94881 1.23562 1.02452 0.93325 1.07185 1.22983 1.02760 1.02342 0.93105 1.21862 0.95108 0.98334 1.05141 0.90847 0.91320 0.91271 0.85502 0.90656 0.90118 0.91184 0.94102 0.87202 0.95213 0.98770 0.92708 0.87469 0.88065 0.89792 0.89453 0.88363 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.06 36.01 0.36 -0.62 16 2 C -0.04 -0.56 5.92 -104.32 -0.62 -1.18 16 3 C -0.19 -2.41 9.45 -39.44 -0.37 -2.78 16 4 C 0.13 2.01 6.78 -82.59 -0.56 1.45 16 5 C -0.10 -1.24 10.17 36.01 0.37 -0.87 16 6 N -0.46 -8.73 10.19 -5.74 -0.06 -8.79 16 7 C 0.16 2.96 5.82 -82.59 -0.48 2.48 16 8 C 0.11 2.16 5.14 -4.97 -0.03 2.14 16 9 N -0.48 -10.45 4.66 -229.51 -1.07 -11.52 16 10 C 0.16 3.91 2.44 -4.98 -0.01 3.90 16 11 C -0.51 -14.63 8.92 -34.44 -0.31 -14.94 16 12 H 0.09 2.72 7.79 -52.49 -0.41 2.31 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 15 Si 0.87 21.51 27.52 -169.99 -4.68 16.83 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.33 6.46 56.52 0.37 -5.96 16 19 C 0.02 0.35 5.80 -67.71 -0.39 -0.05 16 20 C -0.23 -3.77 9.53 -26.73 -0.25 -4.02 16 21 C -0.17 -2.91 9.97 -26.73 -0.27 -3.18 16 22 C -0.18 -2.68 7.81 -39.44 -0.31 -2.99 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 25 H 0.07 0.56 8.10 -51.93 -0.42 0.13 16 26 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 27 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.04 0.74 8.02 -51.93 -0.42 0.32 16 31 H 0.11 2.51 7.00 -51.93 -0.36 2.15 16 32 H 0.03 0.73 5.53 -51.93 -0.29 0.44 16 33 H -0.01 -0.13 6.70 -51.93 -0.35 -0.48 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.11 1.73 5.62 -51.93 -0.29 1.44 16 36 H 0.10 1.89 5.92 -51.93 -0.31 1.58 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.10 1.82 7.70 -51.93 -0.40 1.42 16 40 H 0.13 1.62 7.70 -52.49 -0.40 1.22 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -32.21 323.61 -9.32 -41.53 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.20 Total: 2.79 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.97 Total: -18.71 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.36 Total: -47.31 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.68 Total: 16.83 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.21 -9.32 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723614471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.678 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds