Wall clock time and date at job start Mon Mar 30 2020 07:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38669 * 120.78661 * 2 1 4 4 C 1.38182 * 119.16376 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.62014 * 179.97438 * 4 3 2 6 6 N 1.31888 * 120.76044 * 359.75750 * 4 3 2 7 7 C 1.31851 * 121.72838 * 0.51211 * 6 4 3 8 8 C 1.50699 * 119.62017 * 179.75892 * 7 6 4 9 9 N 1.46909 * 109.47027 * 274.72944 * 8 7 6 10 10 C 1.46898 * 111.00060 * 170.00060 * 9 8 7 11 11 C 1.50704 * 109.46895 * 290.10302 * 10 9 8 12 12 H 1.08001 * 119.99972 * 357.18457 * 11 10 9 13 13 C 1.37881 * 119.99802 * 177.18555 * 11 10 9 14 14 N 1.31514 * 119.99887 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00128 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47184 * 89.99798 * 15 13 11 17 17 H 1.48499 * 109.47335 * 210.00148 * 15 13 11 18 18 H 1.48505 * 109.46948 * 329.99698 * 15 13 11 19 19 C 1.46897 * 110.99701 * 293.95235 * 9 8 7 20 20 C 1.53002 * 117.49815 * 242.23954 * 19 9 8 21 21 C 1.53002 * 117.49950 * 173.61551 * 19 9 8 22 22 C 1.38228 * 120.76115 * 359.48330 * 7 6 4 23 23 H 1.09005 * 109.47057 * 270.01416 * 1 2 3 24 24 H 1.08999 * 109.47810 * 30.01366 * 1 2 3 25 25 H 1.08999 * 109.47469 * 150.02211 * 1 2 3 26 26 H 1.07999 * 120.42161 * 0.02562 * 3 2 1 27 27 H 1.09008 * 109.46473 * 90.00681 * 5 4 3 28 28 H 1.08994 * 109.47448 * 210.00655 * 5 4 3 29 29 H 1.08996 * 109.47314 * 330.00855 * 5 4 3 30 30 H 1.08996 * 109.47227 * 154.73131 * 8 7 6 31 31 H 1.09000 * 109.47062 * 34.72355 * 8 7 6 32 32 H 1.08996 * 109.47131 * 170.10654 * 10 9 8 33 33 H 1.08996 * 109.47098 * 50.10052 * 10 9 8 34 34 H 0.96999 * 120.00267 * 180.02562 * 14 13 11 35 35 H 1.09007 * 115.55372 * 27.94949 * 19 9 8 36 36 H 1.08999 * 117.49841 * 0.02562 * 20 19 9 37 37 H 1.08996 * 117.49847 * 145.02382 * 20 19 9 38 38 H 1.09003 * 117.50041 * 214.97848 * 21 19 9 39 39 H 1.09004 * 117.49694 * 359.97438 * 21 19 9 40 40 H 1.08001 * 120.41737 * 180.27522 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 6 4.3797 2.4406 0.0000 6 7 4.2402 0.0002 0.0058 7 6 3.5983 -1.1515 0.0008 8 6 4.3801 -2.4399 0.0017 9 7 4.7378 -2.7966 -1.3778 10 6 5.6956 -3.9101 -1.4021 11 6 7.0295 -3.4367 -0.8848 12 1 7.1662 -2.4006 -0.6124 13 6 8.0755 -4.3263 -0.7594 14 7 9.2394 -3.9132 -0.3075 15 14 7.8393 -6.1181 -1.2313 16 1 8.1812 -6.3017 -2.6647 17 1 8.7249 -6.9704 -0.3980 18 1 6.4238 -6.5068 -1.0064 19 6 3.5401 -3.1151 -2.1665 20 6 3.4210 -4.5330 -2.7288 21 6 3.7261 -3.3619 -3.6650 22 6 2.2166 -1.1908 0.0004 23 1 -0.3633 0.0003 1.0277 24 1 -0.3635 0.8898 -0.5140 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6966 2.1378 0.0004 27 1 4.5678 2.7518 1.0276 28 1 5.3292 2.2894 -0.5135 29 1 3.8074 3.2125 -0.5144 30 1 3.7721 -3.2334 0.4362 31 1 5.2881 -2.3135 0.5913 32 1 5.8093 -4.2693 -2.4249 33 1 5.3279 -4.7195 -0.7715 34 1 9.9754 -4.5389 -0.2196 35 1 2.6222 -2.6208 -1.8481 36 1 4.2311 -5.2297 -2.5131 37 1 2.4247 -4.9720 -2.7802 38 1 2.9305 -3.0305 -4.3323 39 1 4.7371 -3.2876 -4.0656 40 1 1.6965 -2.1374 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723614471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:11 Heat of formation + Delta-G solvation = 42.633589 kcal Electronic energy + Delta-G solvation = -19456.143198 eV Core-core repulsion = 16656.774442 eV Total energy + Delta-G solvation = -2799.368756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40981 -39.62184 -35.62936 -34.97572 -34.76391 -33.19390 -30.20806 -28.73013 -28.24661 -26.71818 -24.25387 -23.16018 -22.69169 -21.95694 -20.40124 -19.16368 -17.58347 -17.26536 -16.96307 -16.66238 -16.06952 -15.72283 -15.40652 -14.77090 -14.66983 -14.38836 -14.07699 -13.83810 -13.64899 -13.54380 -13.28991 -13.16210 -12.98014 -12.82723 -12.66610 -12.41060 -12.35713 -12.07339 -11.93369 -11.66577 -11.27629 -11.19988 -10.79495 -10.31580 -10.20841 -9.72548 -8.85290 -8.28913 -6.32819 0.18539 0.41493 1.31736 1.33767 1.44028 2.32307 2.66360 2.98779 3.03567 3.29396 3.33387 3.74276 3.79485 4.00241 4.08024 4.15734 4.20636 4.24509 4.45664 4.51940 4.59323 4.66885 4.70467 4.75682 4.76977 4.78783 4.84809 4.87476 4.97322 5.02413 5.09863 5.14602 5.27031 5.28473 5.31594 5.42816 5.52360 5.89459 5.97252 6.32406 6.63622 6.74805 7.27684 7.30211 8.88436 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.005917 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.499080 B = 4730.944011 C = 5570.690503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.039 4.039 3 C -0.178 4.178 4 C 0.109 3.891 5 C -0.101 4.101 6 N -0.518 5.518 7 C 0.137 3.863 8 C 0.116 3.884 9 N -0.507 5.507 10 C 0.178 3.822 11 C -0.518 4.518 12 H 0.030 0.970 13 C 0.009 3.991 14 N -0.948 5.948 15 Si 0.946 3.054 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.247 1.247 19 C 0.004 3.996 20 C -0.212 4.212 21 C -0.172 4.172 22 C -0.182 4.182 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.165 0.835 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.032 0.968 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.840 6.568 -1.101 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.047 4.047 3 C -0.198 4.198 4 C -0.029 4.029 5 C -0.158 4.158 6 N -0.229 5.229 7 C -0.001 4.001 8 C -0.012 4.012 9 N -0.229 5.229 10 C 0.052 3.948 11 C -0.556 4.556 12 H 0.048 0.952 13 C -0.189 4.189 14 N -0.589 5.589 15 Si 0.769 3.231 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.170 1.170 19 C -0.105 4.105 20 C -0.251 4.251 21 C -0.210 4.210 22 C -0.202 4.202 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.183 0.817 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.147 0.853 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.509 6.929 -1.245 21.684 hybrid contribution -0.032 -1.420 0.333 1.458 sum -20.542 5.509 -0.912 21.287 Atomic orbital electron populations 1.20871 0.87216 1.04515 1.03916 1.20710 0.98551 0.91923 0.93517 1.22142 0.93818 1.00161 1.03694 1.21853 0.92747 0.93893 0.94364 1.20769 0.99682 0.91701 1.03626 1.67306 1.43103 0.98914 1.13597 1.21069 0.91719 0.92733 0.94542 1.20729 0.98169 0.91886 0.90445 1.61568 1.10937 1.39341 1.11096 1.19972 0.90338 0.88661 0.95877 1.21268 0.95618 0.96048 1.42653 0.95174 1.25862 0.94431 1.03856 0.94709 1.70069 1.03408 1.37237 1.48204 0.85734 0.79486 0.78934 0.78936 1.19002 1.20490 1.17026 1.22902 0.94230 0.98247 0.95125 1.23570 1.03623 0.92148 1.05777 1.23061 1.02598 1.02463 0.92829 1.21986 0.93450 1.00291 1.04504 0.89308 0.89393 0.90164 0.81716 0.89625 0.92563 0.87815 0.92557 0.92197 0.95028 0.98614 0.92419 0.85257 0.90187 0.86145 0.86094 0.90885 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.06 71.24 0.72 -0.64 16 2 C -0.04 -0.86 5.92 -19.67 -0.12 -0.97 16 3 C -0.18 -4.07 9.45 22.36 0.21 -3.86 16 4 C 0.11 3.31 6.78 42.54 0.29 3.59 16 5 C -0.10 -2.40 10.17 71.24 0.72 -1.68 16 6 N -0.52 -20.59 10.19 -172.08 -1.75 -22.34 16 7 C 0.14 5.06 5.82 42.55 0.25 5.31 16 8 C 0.12 4.89 5.14 85.55 0.44 5.33 16 9 N -0.51 -22.66 4.66 -880.05 -4.10 -26.77 16 10 C 0.18 8.92 2.44 85.56 0.21 9.13 16 11 C -0.52 -31.69 8.92 25.60 0.23 -31.46 16 12 H 0.03 2.11 7.79 -2.91 -0.02 2.09 16 13 C 0.01 0.52 5.47 84.66 0.46 0.98 16 14 N -0.95 -61.63 13.96 21.45 0.30 -61.33 16 15 Si 0.95 45.16 27.52 68.60 1.89 47.05 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.25 -10.86 6.46 99.48 0.64 -10.22 16 19 C 0.00 0.14 5.80 44.92 0.26 0.41 16 20 C -0.21 -6.49 9.53 30.60 0.29 -6.20 16 21 C -0.17 -5.41 9.97 30.60 0.31 -5.10 16 22 C -0.18 -4.98 7.81 22.36 0.17 -4.80 16 23 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 24 H 0.09 0.81 8.10 -2.39 -0.02 0.79 16 25 H 0.08 0.88 8.10 -2.39 -0.02 0.86 16 26 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 27 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.10 1.70 8.08 -2.39 -0.02 1.68 16 30 H 0.06 2.10 8.02 -2.39 -0.02 2.08 16 31 H 0.06 3.05 7.00 -2.39 -0.02 3.03 16 32 H 0.03 1.57 5.53 -2.39 -0.01 1.56 16 33 H 0.00 -0.19 6.70 -2.39 -0.02 -0.20 16 34 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 35 H 0.13 3.85 5.62 -2.38 -0.01 3.84 16 36 H 0.08 2.82 5.92 -2.39 -0.01 2.81 16 37 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.07 2.68 7.70 -2.38 -0.02 2.66 16 40 H 0.15 3.32 7.70 -2.91 -0.02 3.29 16 Total: -1.00 -76.81 323.61 1.73 -75.08 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.95 Total: 18.28 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 4.44 Total: -29.97 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -5.56 Total: -110.44 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.89 Total: 47.05 kcal Total: -76.81 1.73 -75.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723614471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.716 kcal (2) G-P(sol) polarization free energy of solvation -76.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds