Wall clock time and date at job start Mon Mar 30 2020 07:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38675 * 120.79536 * 2 1 4 4 C 1.38179 * 119.16501 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.61438 * 180.02562 * 4 3 2 6 6 N 1.31881 * 120.76683 * 359.73961 * 4 3 2 7 7 C 1.31862 * 121.72440 * 0.52972 * 6 4 3 8 8 C 1.50698 * 119.61632 * 179.75284 * 7 6 4 9 9 N 1.46908 * 109.47012 * 274.72129 * 8 7 6 10 10 C 1.48561 * 110.99903 * 290.12780 * 9 8 7 11 11 C 1.54375 * 104.59287 * 200.95634 * 10 9 8 12 12 C 1.54263 * 105.06248 * 23.85707 * 11 10 9 13 13 H 1.09004 * 110.32776 * 241.00404 * 12 11 10 14 14 C 1.50701 * 110.32673 * 118.89257 * 12 11 10 15 15 H 1.08001 * 119.99655 * 245.25879 * 14 12 11 16 16 C 1.37867 * 119.99868 * 65.25829 * 14 12 11 17 17 N 1.31513 * 120.00337 * 6.35149 * 16 14 12 18 18 Si 1.86804 * 120.00023 * 186.34659 * 16 14 12 19 19 H 1.48499 * 109.46771 * 84.99486 * 18 16 14 20 20 H 1.48497 * 109.47008 * 324.99794 * 18 16 14 21 21 H 1.48502 * 109.47345 * 204.99217 * 18 16 14 22 22 C 1.48559 * 111.00009 * 174.71077 * 9 8 7 23 23 C 1.38226 * 120.76220 * 359.47306 * 7 6 4 24 24 H 1.08996 * 109.47158 * 269.98565 * 1 2 3 25 25 H 1.09009 * 109.46713 * 29.98104 * 1 2 3 26 26 H 1.09000 * 109.47044 * 149.97458 * 1 2 3 27 27 H 1.08002 * 120.41537 * 0.03835 * 3 2 1 28 28 H 1.08994 * 109.47026 * 89.99829 * 5 4 3 29 29 H 1.09006 * 109.46681 * 209.99813 * 5 4 3 30 30 H 1.08998 * 109.46824 * 329.99488 * 5 4 3 31 31 H 1.08996 * 109.47047 * 154.72930 * 8 7 6 32 32 H 1.08994 * 109.47332 * 34.72021 * 8 7 6 33 33 H 1.09008 * 110.40932 * 82.18408 * 10 9 8 34 34 H 1.08993 * 110.51501 * 319.78983 * 10 9 8 35 35 H 1.08998 * 110.33019 * 264.96134 * 11 10 9 36 36 H 1.09001 * 110.32576 * 142.74855 * 11 10 9 37 37 H 0.97001 * 120.00648 * 179.97438 * 17 16 14 38 38 H 1.08999 * 110.41232 * 40.25786 * 22 9 8 39 39 H 1.09005 * 110.41113 * 277.82215 * 22 9 8 40 40 H 1.08001 * 120.41976 * 180.23348 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 -0.0005 5 6 4.3799 2.4404 0.0000 6 7 4.2403 0.0000 0.0041 7 6 3.5983 -1.1518 -0.0010 8 6 4.3799 -2.4401 -0.0010 9 7 4.7366 -2.7965 -1.3808 10 6 3.5351 -3.2067 -2.1523 11 6 4.0929 -4.0356 -3.3291 12 6 5.4618 -4.5533 -2.8416 13 1 6.2589 -4.1791 -3.4842 14 6 5.4736 -6.0601 -2.8180 15 1 5.5657 -6.5847 -1.8785 16 6 5.3669 -6.7687 -3.9958 17 7 5.3806 -6.1351 -5.1481 18 14 5.2029 -8.6291 -3.9549 19 1 3.7759 -8.9962 -3.7705 20 1 6.0032 -9.1719 -2.8280 21 1 5.6991 -9.1980 -5.2337 22 6 5.6161 -3.9934 -1.4112 23 6 2.2166 -1.1910 -0.0005 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6968 2.1378 0.0006 28 1 4.5687 2.7503 1.0278 29 1 5.3291 2.2896 -0.5143 30 1 3.8073 3.2129 -0.5131 31 1 3.7723 -3.2338 0.4336 32 1 5.2883 -2.3140 0.5881 33 1 3.0038 -2.3300 -2.5230 34 1 2.8756 -3.8175 -1.5359 35 1 4.2181 -3.4060 -4.2100 36 1 3.4295 -4.8715 -3.5514 37 1 5.3058 -6.6336 -5.9768 38 1 5.2839 -4.7279 -0.6775 39 1 6.6516 -3.7092 -1.2237 40 1 1.6963 -2.1374 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723621996.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:48 Heat of formation + Delta-G solvation = 24.018706 kcal Electronic energy + Delta-G solvation = -19173.308464 eV Core-core repulsion = 16373.132506 eV Total energy + Delta-G solvation = -2800.175958 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35597 -37.91383 -34.15983 -33.89071 -32.47202 -30.27626 -28.22306 -27.92730 -27.52235 -25.72979 -23.93732 -21.59572 -21.08948 -19.95737 -19.29867 -16.59597 -16.30423 -15.96471 -15.27141 -15.05931 -14.55816 -14.40951 -14.03598 -13.43770 -13.40914 -13.06366 -12.88212 -12.65371 -12.35115 -12.24694 -12.15051 -11.93387 -11.55245 -11.08985 -11.08205 -10.78405 -10.66565 -10.47011 -10.27747 -9.74026 -9.41457 -9.32331 -9.18861 -8.76974 -8.68939 -8.36634 -7.78448 -6.00522 -4.03320 1.18449 1.33883 3.30929 3.37717 3.40087 3.76999 4.28473 4.43692 4.57927 4.62425 4.91832 5.06690 5.14684 5.28555 5.31897 5.36557 5.42816 5.52226 5.55000 5.60476 5.69982 5.72965 5.88942 5.95557 6.02768 6.11325 6.21807 6.30603 6.32711 6.42203 6.55238 6.81140 6.89188 7.11396 7.18364 7.52503 7.67529 7.71112 7.89801 8.02673 8.21552 8.47919 8.99881 9.60162 11.09274 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033631 B = 0.004219 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.357773 B = 6634.869065 C = 6965.485836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.042 4.042 3 C -0.185 4.185 4 C 0.129 3.871 5 C -0.102 4.102 6 N -0.471 5.471 7 C 0.161 3.839 8 C 0.091 3.909 9 N -0.505 5.505 10 C 0.033 3.967 11 C -0.095 4.095 12 C 0.048 3.952 13 H 0.039 0.961 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.275 1.275 21 H -0.287 1.287 22 C 0.042 3.958 23 C -0.175 4.175 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.129 0.871 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.031 0.969 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.260 0.740 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 13.697 10.717 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.205 4.205 4 C -0.009 4.009 5 C -0.159 4.159 6 N -0.182 5.182 7 C 0.022 3.978 8 C -0.038 4.038 9 N -0.229 5.229 10 C -0.095 4.095 11 C -0.134 4.134 12 C 0.029 3.971 13 H 0.057 0.943 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.524 5.524 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.200 1.200 21 H -0.213 1.213 22 C -0.085 4.085 23 C -0.195 4.195 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.147 0.853 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.256 14.136 10.301 18.936 hybrid contribution -1.554 -1.746 0.279 2.354 sum -8.810 12.390 10.580 18.522 Atomic orbital electron populations 1.20803 0.90455 1.03272 1.02582 1.20262 0.96527 0.92912 0.95246 1.21751 0.94862 0.98377 1.05502 1.21269 0.91082 0.94079 0.94462 1.20684 1.00449 0.92040 1.02728 1.67344 1.41023 0.97470 1.12380 1.21141 0.90603 0.93570 0.92449 1.21107 0.98779 0.90920 0.93017 1.65413 1.13407 1.35146 1.08917 1.23192 0.91982 0.97577 0.96704 1.22264 0.99479 0.97111 0.94534 1.19371 0.93624 0.94757 0.89331 0.94312 1.21177 1.50750 0.90795 0.92803 0.92698 1.24959 0.95172 0.98120 0.95544 1.69989 1.49710 1.35516 0.97185 0.86680 0.78333 0.86052 0.77353 1.20676 1.19972 1.21293 1.23315 0.95697 0.88760 1.00764 1.21870 0.94992 0.98628 1.04044 0.90767 0.91194 0.90978 0.85333 0.90713 0.90316 0.91013 0.93448 0.89506 0.92451 0.95023 0.93637 0.91888 0.93006 0.94589 0.91824 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.06 36.00 0.36 -0.62 16 2 C -0.04 -0.50 5.92 -104.32 -0.62 -1.12 16 3 C -0.18 -2.18 9.45 -39.44 -0.37 -2.55 16 4 C 0.13 1.75 6.78 -82.59 -0.56 1.19 16 5 C -0.10 -1.02 10.17 36.01 0.37 -0.65 16 6 N -0.47 -7.77 10.19 -5.74 -0.06 -7.83 16 7 C 0.16 2.60 5.92 -82.58 -0.49 2.11 16 8 C 0.09 1.53 5.13 -4.97 -0.03 1.51 16 9 N -0.50 -10.12 5.36 -231.41 -1.24 -11.36 16 10 C 0.03 0.67 5.59 -2.18 -0.01 0.66 16 11 C -0.10 -2.28 6.07 -25.35 -0.15 -2.43 16 12 C 0.05 1.23 2.88 -90.39 -0.26 0.97 16 13 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 14 C -0.52 -14.19 8.31 -34.44 -0.29 -14.48 16 15 H 0.05 1.48 7.56 -52.49 -0.40 1.09 16 16 C 0.06 1.78 5.12 -17.82 -0.09 1.69 16 17 N -0.89 -25.71 12.89 55.43 0.71 -25.00 16 18 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.04 0.90 6.02 -2.18 -0.01 0.89 16 23 C -0.17 -2.44 8.88 -39.44 -0.35 -2.79 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.51 8.10 -51.92 -0.42 0.09 16 26 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.05 0.75 7.78 -51.93 -0.40 0.34 16 32 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 33 H 0.06 1.11 8.05 -51.92 -0.42 0.70 16 34 H 0.03 0.60 7.82 -51.93 -0.41 0.20 16 35 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.60 7.52 -51.93 -0.39 1.21 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.04 0.77 7.54 -51.93 -0.39 0.37 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -30.46 327.56 -9.78 -40.24 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.61 Total: -1.56 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.50 Total: -15.64 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.58 Total: -44.18 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.46 -9.78 -40.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723621996.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.259 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds