Wall clock time and date at job start Mon Mar 30 2020 07:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38675 * 120.79536 * 2 1 4 4 C 1.38179 * 119.16501 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.61438 * 180.02562 * 4 3 2 6 6 N 1.31881 * 120.76683 * 359.73961 * 4 3 2 7 7 C 1.31862 * 121.72440 * 0.52972 * 6 4 3 8 8 C 1.50698 * 119.61632 * 179.75284 * 7 6 4 9 9 N 1.46908 * 109.47012 * 274.72129 * 8 7 6 10 10 C 1.48561 * 110.99903 * 290.12780 * 9 8 7 11 11 C 1.54375 * 104.59287 * 200.95634 * 10 9 8 12 12 C 1.54263 * 105.06248 * 23.85707 * 11 10 9 13 13 H 1.09004 * 110.32776 * 241.00404 * 12 11 10 14 14 C 1.50701 * 110.32673 * 118.89257 * 12 11 10 15 15 H 1.08001 * 119.99655 * 245.25879 * 14 12 11 16 16 C 1.37867 * 119.99868 * 65.25829 * 14 12 11 17 17 N 1.31513 * 120.00337 * 6.35149 * 16 14 12 18 18 Si 1.86804 * 120.00023 * 186.34659 * 16 14 12 19 19 H 1.48499 * 109.46771 * 84.99486 * 18 16 14 20 20 H 1.48497 * 109.47008 * 324.99794 * 18 16 14 21 21 H 1.48502 * 109.47345 * 204.99217 * 18 16 14 22 22 C 1.48559 * 111.00009 * 174.71077 * 9 8 7 23 23 C 1.38226 * 120.76220 * 359.47306 * 7 6 4 24 24 H 1.08996 * 109.47158 * 269.98565 * 1 2 3 25 25 H 1.09009 * 109.46713 * 29.98104 * 1 2 3 26 26 H 1.09000 * 109.47044 * 149.97458 * 1 2 3 27 27 H 1.08002 * 120.41537 * 0.03835 * 3 2 1 28 28 H 1.08994 * 109.47026 * 89.99829 * 5 4 3 29 29 H 1.09006 * 109.46681 * 209.99813 * 5 4 3 30 30 H 1.08998 * 109.46824 * 329.99488 * 5 4 3 31 31 H 1.08996 * 109.47047 * 154.72930 * 8 7 6 32 32 H 1.08994 * 109.47332 * 34.72021 * 8 7 6 33 33 H 1.09008 * 110.40932 * 82.18408 * 10 9 8 34 34 H 1.08993 * 110.51501 * 319.78983 * 10 9 8 35 35 H 1.08998 * 110.33019 * 264.96134 * 11 10 9 36 36 H 1.09001 * 110.32576 * 142.74855 * 11 10 9 37 37 H 0.97001 * 120.00648 * 179.97438 * 17 16 14 38 38 H 1.08999 * 110.41232 * 40.25786 * 22 9 8 39 39 H 1.09005 * 110.41113 * 277.82215 * 22 9 8 40 40 H 1.08001 * 120.41976 * 180.23348 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 -0.0005 5 6 4.3799 2.4404 0.0000 6 7 4.2403 0.0000 0.0041 7 6 3.5983 -1.1518 -0.0010 8 6 4.3799 -2.4401 -0.0010 9 7 4.7366 -2.7965 -1.3808 10 6 3.5351 -3.2067 -2.1523 11 6 4.0929 -4.0356 -3.3291 12 6 5.4618 -4.5533 -2.8416 13 1 6.2589 -4.1791 -3.4842 14 6 5.4736 -6.0601 -2.8180 15 1 5.5657 -6.5847 -1.8785 16 6 5.3669 -6.7687 -3.9958 17 7 5.3806 -6.1351 -5.1481 18 14 5.2029 -8.6291 -3.9549 19 1 3.7759 -8.9962 -3.7705 20 1 6.0032 -9.1719 -2.8280 21 1 5.6991 -9.1980 -5.2337 22 6 5.6161 -3.9934 -1.4112 23 6 2.2166 -1.1910 -0.0005 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6968 2.1378 0.0006 28 1 4.5687 2.7503 1.0278 29 1 5.3291 2.2896 -0.5143 30 1 3.8073 3.2129 -0.5131 31 1 3.7723 -3.2338 0.4336 32 1 5.2883 -2.3140 0.5881 33 1 3.0038 -2.3300 -2.5230 34 1 2.8756 -3.8175 -1.5359 35 1 4.2181 -3.4060 -4.2100 36 1 3.4295 -4.8715 -3.5514 37 1 5.3058 -6.6336 -5.9768 38 1 5.2839 -4.7279 -0.6775 39 1 6.6516 -3.7092 -1.2237 40 1 1.6963 -2.1374 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723621996.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:48 Heat of formation + Delta-G solvation = 5.311164 kcal Electronic energy + Delta-G solvation = -19174.119684 eV Core-core repulsion = 16373.132506 eV Total energy + Delta-G solvation = -2800.987178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.39822 -39.57894 -35.55598 -35.00035 -34.07172 -31.88123 -29.97373 -29.03308 -28.36094 -27.17788 -25.80422 -22.79128 -22.24593 -21.48490 -21.11277 -18.37638 -17.59281 -16.94056 -16.86054 -16.69467 -16.14901 -15.77901 -15.25941 -14.85186 -14.37454 -14.19536 -14.09796 -13.92519 -13.56007 -13.37874 -13.14795 -13.04519 -13.01744 -12.82345 -12.68047 -12.54210 -12.25247 -12.13672 -12.05467 -11.72649 -11.20391 -10.81736 -10.50630 -10.36161 -10.28822 -9.77307 -9.34542 -8.14018 -6.24306 0.16638 0.37173 1.42253 1.42294 1.52477 2.42463 2.70062 3.16699 3.25419 3.34378 3.72788 3.77386 4.07009 4.10400 4.20234 4.29993 4.38763 4.44973 4.55471 4.59117 4.61572 4.65932 4.71935 4.78894 4.80056 4.82673 4.92518 5.01120 5.08296 5.20202 5.25790 5.27543 5.29269 5.41586 5.57949 5.71207 5.82311 5.87281 5.95058 6.17994 6.39157 6.86596 7.18012 7.43317 8.96007 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033631 B = 0.004219 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.357773 B = 6634.869065 C = 6965.485836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.043 4.043 3 C -0.180 4.180 4 C 0.110 3.890 5 C -0.099 4.099 6 N -0.508 5.508 7 C 0.135 3.865 8 C 0.094 3.906 9 N -0.515 5.515 10 C 0.051 3.949 11 C -0.088 4.088 12 C 0.040 3.960 13 H -0.002 1.002 14 C -0.532 4.532 15 H 0.057 0.943 16 C 0.014 3.986 17 N -0.920 5.920 18 Si 0.956 3.044 19 H -0.273 1.273 20 H -0.267 1.267 21 H -0.285 1.285 22 C 0.054 3.946 23 C -0.185 4.185 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.163 0.837 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.026 0.974 36 H 0.042 0.958 37 H 0.261 0.739 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.347 14.477 12.137 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.051 4.051 3 C -0.199 4.199 4 C -0.027 4.027 5 C -0.156 4.156 6 N -0.220 5.220 7 C -0.003 4.003 8 C -0.034 4.034 9 N -0.239 5.239 10 C -0.077 4.077 11 C -0.127 4.127 12 C 0.021 3.979 13 H 0.017 0.983 14 C -0.571 4.571 15 H 0.076 0.924 16 C -0.185 4.185 17 N -0.559 5.559 18 Si 0.781 3.219 19 H -0.198 1.198 20 H -0.191 1.191 21 H -0.211 1.211 22 C -0.073 4.073 23 C -0.206 4.206 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.181 0.819 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.178 14.921 11.740 21.088 hybrid contribution -0.955 -1.878 -0.154 2.113 sum -10.132 13.043 11.586 20.175 Atomic orbital electron populations 1.20875 0.87804 1.04242 1.03898 1.20705 0.98414 0.92271 0.93696 1.22151 0.94288 0.99834 1.03670 1.21869 0.92487 0.94210 0.94149 1.20763 0.99777 0.91214 1.03837 1.67283 1.42408 0.98470 1.13819 1.21020 0.91450 0.93090 0.94692 1.21092 0.99310 0.92209 0.90797 1.65345 1.13230 1.33960 1.11368 1.22988 0.92071 0.97375 0.95264 1.22060 0.98525 0.96589 0.95491 1.19327 0.93108 0.94336 0.91139 0.98348 1.21500 1.50627 0.91886 0.93041 0.92442 1.25772 0.94725 1.02910 0.95094 1.70124 1.50618 1.37378 0.97804 0.85608 0.78630 0.80207 0.77460 1.19805 1.19105 1.21118 1.23065 0.96481 0.89531 0.98244 1.22011 0.94274 0.99984 1.04281 0.89120 0.89474 0.90807 0.81939 0.89245 0.91759 0.88425 0.92120 0.89660 0.91515 0.93500 0.95531 0.93878 0.92992 0.93993 0.91618 0.84387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.06 71.23 0.72 -0.81 16 2 C -0.04 -0.92 5.92 -19.67 -0.12 -1.04 16 3 C -0.18 -3.70 9.45 22.36 0.21 -3.49 16 4 C 0.11 2.81 6.78 42.54 0.29 3.10 16 5 C -0.10 -1.79 10.17 71.24 0.72 -1.07 16 6 N -0.51 -16.47 10.19 -172.08 -1.75 -18.23 16 7 C 0.14 4.26 5.92 42.55 0.25 4.51 16 8 C 0.09 3.14 5.13 85.55 0.44 3.58 16 9 N -0.51 -20.63 5.36 -886.04 -4.75 -25.38 16 10 C 0.05 2.03 5.59 86.45 0.48 2.51 16 11 C -0.09 -4.33 6.07 31.49 0.19 -4.14 16 12 C 0.04 2.11 2.88 -10.64 -0.03 2.08 16 13 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 14 C -0.53 -29.71 8.31 25.60 0.21 -29.50 16 15 H 0.06 3.11 7.56 -2.91 -0.02 3.08 16 16 C 0.01 0.79 5.12 84.65 0.43 1.22 16 17 N -0.92 -54.78 12.89 21.44 0.28 -54.51 16 18 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 C 0.05 2.37 6.02 86.45 0.52 2.89 16 23 C -0.19 -4.86 8.88 22.36 0.20 -4.66 16 24 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.09 0.91 8.10 -2.38 -0.02 0.89 16 26 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 27 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 30 H 0.10 1.23 8.08 -2.39 -0.02 1.21 16 31 H 0.06 1.83 7.78 -2.39 -0.02 1.81 16 32 H 0.09 2.81 8.13 -2.39 -0.02 2.79 16 33 H 0.07 2.55 8.05 -2.38 -0.02 2.53 16 34 H 0.05 1.73 7.82 -2.39 -0.02 1.71 16 35 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 2.25 7.52 -2.39 -0.02 2.23 16 37 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 38 H 0.04 1.77 7.54 -2.39 -0.02 1.76 16 39 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 40 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -67.14 327.56 1.32 -65.82 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.99 Total: 11.32 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 4.52 Total: -24.80 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -6.23 Total: -98.11 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -67.14 1.32 -65.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723621996.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.131 kcal (2) G-P(sol) polarization free energy of solvation -67.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds