Wall clock time and date at job start Mon Mar 30 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86804 * 119.99841 * 2 1 4 4 H 1.48508 * 109.47105 * 275.41555 * 3 2 1 5 5 H 1.48503 * 109.47038 * 35.41431 * 3 2 1 6 6 H 1.48497 * 109.47187 * 155.41638 * 3 2 1 7 7 C 1.39866 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99815 * 341.72133 * 7 2 1 9 9 C 1.41137 * 120.00165 * 161.71763 * 7 2 1 10 10 C 1.40885 * 120.15378 * 330.13240 * 9 7 2 11 11 C 1.36341 * 119.83484 * 179.97438 * 10 9 7 12 12 C 1.39569 * 120.16282 * 359.97438 * 11 10 9 13 13 N 1.38857 * 119.84360 * 179.97438 * 12 11 10 14 14 C 1.46500 * 119.99729 * 179.97438 * 13 12 11 15 15 H 1.08994 * 110.05862 * 34.96339 * 14 13 12 16 16 C 1.53879 * 110.03350 * 273.54360 * 14 13 12 17 17 C 1.54265 * 106.59697 * 240.71855 * 16 14 13 18 18 C 1.54886 * 104.31450 * 336.32370 * 17 16 14 19 19 H 1.09003 * 110.75597 * 279.69166 * 18 17 16 20 20 C 1.53003 * 110.75525 * 156.32612 * 18 17 16 21 21 N 1.46898 * 109.47199 * 66.45222 * 20 18 17 22 22 C 1.54276 * 110.02996 * 156.37857 * 14 13 12 23 23 C 1.39566 * 120.31215 * 0.27212 * 12 11 10 24 24 C 1.36344 * 120.16358 * 359.48273 * 23 12 11 25 25 H 0.96995 * 120.00332 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.08212 * 359.95628 * 10 9 7 27 27 H 1.07999 * 119.91915 * 179.97438 * 11 10 9 28 28 H 0.97004 * 120.00161 * 359.97438 * 13 12 11 29 29 H 1.08992 * 110.02939 * 121.43095 * 16 14 13 30 30 H 1.09001 * 110.06958 * 0.02562 * 16 14 13 31 31 H 1.09004 * 110.48293 * 95.07019 * 17 16 14 32 32 H 1.09002 * 110.48106 * 217.57604 * 17 16 14 33 33 H 1.09002 * 109.47241 * 186.45259 * 20 18 17 34 34 H 1.09005 * 109.46923 * 306.45281 * 20 18 17 35 35 H 1.00904 * 111.00303 * 56.04496 * 21 20 18 36 36 H 1.00898 * 111.00197 * 179.97438 * 21 20 18 37 37 H 1.08994 * 110.48545 * 261.57031 * 22 14 13 38 38 H 1.09000 * 110.48453 * 24.08774 * 22 14 13 39 39 H 1.07999 * 119.91783 * 179.72897 * 23 12 11 40 40 H 1.07998 * 120.08527 * 180.23496 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3761 2.1126 -1.3939 5 1 1.5023 2.6170 0.8113 6 1 3.5931 1.4100 0.5824 7 6 2.0084 -1.2112 -0.0005 8 1 1.5093 -2.1231 0.2924 9 6 3.3664 -1.2419 -0.3840 10 6 3.8593 -0.3090 -1.3176 11 6 5.1724 -0.3442 -1.6830 12 6 6.0277 -1.3009 -1.1342 13 7 7.3637 -1.3310 -1.5114 14 6 8.2645 -2.3335 -0.9370 15 1 7.7283 -3.2684 -0.7743 16 6 8.8450 -1.8204 0.3925 17 6 10.3759 -1.7618 0.2115 18 6 10.6666 -2.7769 -0.9216 19 1 10.6802 -3.7955 -0.5337 20 6 11.9856 -2.4444 -1.6222 21 7 13.1007 -2.6442 -0.6871 22 6 9.4630 -2.5687 -1.8796 23 6 5.5450 -2.2314 -0.2127 24 6 4.2354 -2.2049 0.1658 25 1 -0.4850 0.8400 0.0004 26 1 3.1987 0.4320 -1.7430 27 1 5.5517 0.3700 -2.3988 28 1 7.7005 -0.6884 -2.1552 29 1 8.5904 -2.5063 1.2004 30 1 8.4565 -0.8257 0.6112 31 1 10.6869 -0.7599 -0.0847 32 1 10.8803 -2.0608 1.1303 33 1 12.1135 -3.0980 -2.4851 34 1 11.9698 -1.4057 -1.9523 35 1 13.0984 -3.5828 -0.3168 36 1 13.9837 -2.4313 -1.1265 37 1 9.3012 -3.4588 -2.4874 38 1 9.6252 -1.6981 -2.5150 39 1 6.2115 -2.9717 0.2047 40 1 3.8642 -2.9231 0.8818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724049254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:49 Heat of formation + Delta-G solvation = 7.627735 kcal Electronic energy + Delta-G solvation = -18949.883785 eV Core-core repulsion = 16148.997061 eV Total energy + Delta-G solvation = -2800.886724 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.14254 -37.72728 -35.19937 -33.63103 -32.46788 -29.89745 -29.36495 -28.95540 -27.09302 -24.00708 -23.63418 -21.67305 -20.53271 -20.09634 -19.54152 -17.24623 -16.55245 -16.23315 -15.77584 -15.34147 -14.76890 -14.61100 -14.23484 -13.60016 -13.40658 -13.12322 -12.71423 -12.49544 -12.35879 -12.26467 -12.05820 -11.54211 -11.30898 -11.02667 -10.96812 -10.77763 -10.74265 -10.58001 -10.40525 -10.11824 -9.89279 -9.46194 -9.15837 -8.97638 -8.65643 -7.73799 -6.73686 -6.55688 -4.13424 2.73005 2.84268 3.21980 3.32168 3.44067 4.04732 4.13359 4.33356 4.53898 4.64122 4.71807 4.86365 5.17703 5.25614 5.38385 5.50445 5.56359 5.62053 5.65372 5.70160 5.86377 5.89255 6.06603 6.08515 6.18791 6.24412 6.38242 6.45111 6.59382 6.73704 6.80167 6.94802 7.09540 7.18114 7.35851 7.43559 7.64663 7.97457 8.10651 8.37244 8.52784 8.61859 8.88330 9.02309 10.30892 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.048815 B = 0.003870 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.459284 B = 7233.707315 C = 7366.606083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.082 3.918 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.246 1.246 7 C -0.456 4.456 8 H 0.085 0.915 9 C 0.059 3.941 10 C -0.197 4.197 11 C -0.145 4.145 12 C 0.094 3.906 13 N -0.754 5.754 14 C 0.160 3.840 15 H 0.073 0.927 16 C -0.145 4.145 17 C -0.102 4.102 18 C -0.091 4.091 19 H 0.074 0.926 20 C 0.070 3.930 21 N -0.850 5.850 22 C -0.123 4.123 23 C -0.147 4.147 24 C -0.170 4.170 25 H 0.280 0.720 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.384 0.616 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.339 0.661 36 H 0.339 0.661 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.743 -3.390 -2.691 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.170 1.170 7 C -0.486 4.486 8 H 0.103 0.897 9 C 0.055 3.945 10 C -0.216 4.216 11 C -0.167 4.167 12 C -0.003 4.003 13 N -0.388 5.388 14 C 0.053 3.947 15 H 0.091 0.909 16 C -0.185 4.185 17 C -0.139 4.139 18 C -0.110 4.110 19 H 0.092 0.908 20 C -0.061 4.061 21 N -0.379 5.379 22 C -0.162 4.162 23 C -0.169 4.169 24 C -0.190 4.190 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.217 0.783 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 20.138 -2.874 -2.131 20.453 hybrid contribution 0.618 0.308 -0.952 1.176 sum 20.756 -2.566 -3.083 21.140 Atomic orbital electron populations 1.69741 1.07915 1.29610 1.37932 1.26046 0.94623 1.01307 0.91356 0.86380 0.81288 0.80362 0.78465 1.20060 1.22208 1.16957 1.19269 0.93340 0.95860 1.40115 0.89664 1.17635 0.93302 0.92165 0.91373 1.20618 0.94953 1.03647 1.02419 1.19901 0.94100 0.99700 1.02972 1.17314 0.83742 0.98716 1.00526 1.44069 1.06466 1.37399 1.50875 1.21220 0.89515 0.92259 0.91665 0.90853 1.22808 0.95158 1.02308 0.98218 1.22215 0.95198 0.98590 0.97942 1.22150 0.92932 0.99746 0.96202 0.90804 1.21796 0.90624 1.00824 0.92851 1.58686 1.05955 1.32874 1.40381 1.22681 0.94099 1.01779 0.97595 1.20051 0.96129 0.99677 1.01049 1.20646 0.92590 1.02979 1.02769 0.90971 0.88266 0.89082 0.78252 0.92086 0.91014 0.91983 0.91803 0.95776 0.91024 0.84879 0.84903 0.91525 0.91218 0.88736 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.12 13.93 55.54 0.77 -22.35 16 2 C 0.08 2.27 5.40 -17.34 -0.09 2.17 16 3 Si 0.91 21.77 24.51 -169.99 -4.17 17.60 16 4 H -0.27 -6.38 6.70 56.52 0.38 -6.00 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.25 -6.05 6.87 56.52 0.39 -5.66 16 7 C -0.46 -12.84 9.55 -37.87 -0.36 -13.20 16 8 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 9 C 0.06 1.53 5.10 -106.79 -0.55 0.99 16 10 C -0.20 -4.87 7.11 -39.26 -0.28 -5.15 16 11 C -0.14 -3.18 9.82 -39.77 -0.39 -3.57 16 12 C 0.09 1.92 6.66 -83.69 -0.56 1.36 16 13 N -0.75 -12.11 5.14 -50.95 -0.26 -12.37 16 14 C 0.16 2.16 2.88 -66.81 -0.19 1.97 16 15 H 0.07 1.07 6.47 -51.93 -0.34 0.73 16 16 C -0.15 -1.89 6.59 -25.61 -0.17 -2.06 16 17 C -0.10 -1.10 6.09 -25.07 -0.15 -1.25 16 18 C -0.09 -0.85 3.10 -88.44 -0.27 -1.12 16 19 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 20 C 0.07 0.56 6.24 -3.82 -0.02 0.54 16 21 N -0.85 -6.22 9.44 -10.37 -0.10 -6.31 16 22 C -0.12 -1.29 5.99 -24.88 -0.15 -1.44 16 23 C -0.15 -3.12 9.14 -39.77 -0.36 -3.48 16 24 C -0.17 -4.04 9.74 -39.26 -0.38 -4.42 16 25 H 0.28 7.15 8.30 -40.82 -0.34 6.81 16 26 H 0.10 2.48 4.73 -52.49 -0.25 2.23 16 27 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.38 5.57 8.34 -40.82 -0.34 5.23 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.08 7.92 -51.93 -0.41 0.67 16 31 H 0.06 0.70 8.01 -51.93 -0.42 0.29 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.34 2.13 8.99 -39.29 -0.35 1.78 16 36 H 0.34 1.93 9.08 -39.29 -0.36 1.57 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.71 7.64 -51.93 -0.40 0.31 16 39 H 0.09 1.77 6.21 -52.49 -0.33 1.44 16 40 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 315.77 15.07 4.76 4.76 Total: -1.00 -28.94 315.77 -9.09 -38.02 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.16 Total: 9.31 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -3.93 Total: -28.66 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.41 Total: -41.03 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.17 Total: 17.60 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.94 -9.09 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724049254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.651 kcal (2) G-P(sol) polarization free energy of solvation -28.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds