Wall clock time and date at job start Mon Mar 30 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86804 * 119.99841 * 2 1 4 4 H 1.48508 * 109.47105 * 275.41555 * 3 2 1 5 5 H 1.48503 * 109.47038 * 35.41431 * 3 2 1 6 6 H 1.48497 * 109.47187 * 155.41638 * 3 2 1 7 7 C 1.39866 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99815 * 341.72133 * 7 2 1 9 9 C 1.41137 * 120.00165 * 161.71763 * 7 2 1 10 10 C 1.40885 * 120.15378 * 330.13240 * 9 7 2 11 11 C 1.36341 * 119.83484 * 179.97438 * 10 9 7 12 12 C 1.39569 * 120.16282 * 359.97438 * 11 10 9 13 13 N 1.38857 * 119.84360 * 179.97438 * 12 11 10 14 14 C 1.46500 * 119.99729 * 179.97438 * 13 12 11 15 15 H 1.08994 * 110.05862 * 34.96339 * 14 13 12 16 16 C 1.53879 * 110.03350 * 273.54360 * 14 13 12 17 17 C 1.54265 * 106.59697 * 240.71855 * 16 14 13 18 18 C 1.54886 * 104.31450 * 336.32370 * 17 16 14 19 19 H 1.09003 * 110.75597 * 279.69166 * 18 17 16 20 20 C 1.53003 * 110.75525 * 156.32612 * 18 17 16 21 21 N 1.46898 * 109.47199 * 66.45222 * 20 18 17 22 22 C 1.54276 * 110.02996 * 156.37857 * 14 13 12 23 23 C 1.39566 * 120.31215 * 0.27212 * 12 11 10 24 24 C 1.36344 * 120.16358 * 359.48273 * 23 12 11 25 25 H 0.96995 * 120.00332 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.08212 * 359.95628 * 10 9 7 27 27 H 1.07999 * 119.91915 * 179.97438 * 11 10 9 28 28 H 0.97004 * 120.00161 * 359.97438 * 13 12 11 29 29 H 1.08992 * 110.02939 * 121.43095 * 16 14 13 30 30 H 1.09001 * 110.06958 * 0.02562 * 16 14 13 31 31 H 1.09004 * 110.48293 * 95.07019 * 17 16 14 32 32 H 1.09002 * 110.48106 * 217.57604 * 17 16 14 33 33 H 1.09002 * 109.47241 * 186.45259 * 20 18 17 34 34 H 1.09005 * 109.46923 * 306.45281 * 20 18 17 35 35 H 1.00904 * 111.00303 * 56.04496 * 21 20 18 36 36 H 1.00898 * 111.00197 * 179.97438 * 21 20 18 37 37 H 1.08994 * 110.48545 * 261.57031 * 22 14 13 38 38 H 1.09000 * 110.48453 * 24.08774 * 22 14 13 39 39 H 1.07999 * 119.91783 * 179.72897 * 23 12 11 40 40 H 1.07998 * 120.08527 * 180.23496 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3761 2.1126 -1.3939 5 1 1.5023 2.6170 0.8113 6 1 3.5931 1.4100 0.5824 7 6 2.0084 -1.2112 -0.0005 8 1 1.5093 -2.1231 0.2924 9 6 3.3664 -1.2419 -0.3840 10 6 3.8593 -0.3090 -1.3176 11 6 5.1724 -0.3442 -1.6830 12 6 6.0277 -1.3009 -1.1342 13 7 7.3637 -1.3310 -1.5114 14 6 8.2645 -2.3335 -0.9370 15 1 7.7283 -3.2684 -0.7743 16 6 8.8450 -1.8204 0.3925 17 6 10.3759 -1.7618 0.2115 18 6 10.6666 -2.7769 -0.9216 19 1 10.6802 -3.7955 -0.5337 20 6 11.9856 -2.4444 -1.6222 21 7 13.1007 -2.6442 -0.6871 22 6 9.4630 -2.5687 -1.8796 23 6 5.5450 -2.2314 -0.2127 24 6 4.2354 -2.2049 0.1658 25 1 -0.4850 0.8400 0.0004 26 1 3.1987 0.4320 -1.7430 27 1 5.5517 0.3700 -2.3988 28 1 7.7005 -0.6884 -2.1552 29 1 8.5904 -2.5063 1.2004 30 1 8.4565 -0.8257 0.6112 31 1 10.6869 -0.7599 -0.0847 32 1 10.8803 -2.0608 1.1303 33 1 12.1135 -3.0980 -2.4851 34 1 11.9698 -1.4057 -1.9523 35 1 13.0984 -3.5828 -0.3168 36 1 13.9837 -2.4313 -1.1265 37 1 9.3012 -3.4588 -2.4874 38 1 9.6252 -1.6981 -2.5150 39 1 6.2115 -2.9717 0.2047 40 1 3.8642 -2.9231 0.8818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724049254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:49 Heat of formation + Delta-G solvation = -11.637729 kcal Electronic energy + Delta-G solvation = -18950.719198 eV Core-core repulsion = 16148.997061 eV Total energy + Delta-G solvation = -2801.722137 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.41724 -39.17592 -36.44547 -35.12865 -33.90852 -31.67922 -31.01460 -29.83489 -28.32907 -25.77575 -24.50819 -23.25886 -22.25439 -21.05607 -20.70486 -19.19996 -18.08790 -17.17125 -16.95209 -16.78768 -15.91654 -15.70108 -15.32585 -15.09563 -14.82374 -14.47330 -14.31308 -14.06870 -13.97662 -13.94095 -13.18473 -12.93757 -12.63894 -12.40405 -12.33559 -12.02909 -11.84840 -11.78728 -11.76034 -11.52754 -11.39520 -11.31684 -10.98055 -10.40322 -9.56233 -9.51165 -8.76302 -8.26541 -6.16419 0.88298 0.98116 1.28584 1.43587 1.52389 2.18749 2.71591 2.83426 3.53868 3.63805 3.68076 3.91025 4.07623 4.22365 4.34328 4.41335 4.52045 4.56130 4.63374 4.70631 4.75653 4.76633 4.91852 4.95641 5.00828 5.08813 5.09295 5.22045 5.28790 5.35567 5.43686 5.54681 5.57278 5.64010 5.80617 6.00600 6.26609 6.29405 6.44446 6.65283 6.70697 6.92249 7.01038 7.23619 8.34478 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.048815 B = 0.003870 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.459284 B = 7233.707315 C = 7366.606083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.041 3.959 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.256 1.256 7 C -0.490 4.490 8 H 0.048 0.952 9 C 0.025 3.975 10 C -0.200 4.200 11 C -0.160 4.160 12 C 0.127 3.873 13 N -0.742 5.742 14 C 0.152 3.848 15 H 0.067 0.933 16 C -0.143 4.143 17 C -0.094 4.094 18 C -0.083 4.083 19 H 0.080 0.920 20 C 0.074 3.926 21 N -0.859 5.859 22 C -0.114 4.114 23 C -0.154 4.154 24 C -0.173 4.173 25 H 0.287 0.713 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.397 0.603 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.067 0.933 35 H 0.345 0.655 36 H 0.349 0.651 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.713 -3.107 -3.748 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.170 4.170 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.522 4.522 8 H 0.066 0.934 9 C 0.022 3.978 10 C -0.220 4.220 11 C -0.182 4.182 12 C 0.027 3.973 13 N -0.375 5.375 14 C 0.047 3.953 15 H 0.085 0.915 16 C -0.183 4.183 17 C -0.132 4.132 18 C -0.102 4.102 19 H 0.098 0.902 20 C -0.057 4.057 21 N -0.389 5.389 22 C -0.153 4.153 23 C -0.176 4.176 24 C -0.193 4.193 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.232 0.768 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 24.168 -2.601 -3.206 24.518 hybrid contribution -0.312 0.067 -0.652 0.726 sum 23.856 -2.535 -3.858 24.299 Atomic orbital electron populations 1.69781 1.09028 1.30688 1.40545 1.26715 0.95273 1.03891 0.91071 0.85502 0.79467 0.77015 0.79103 1.18632 1.20912 1.17958 1.19263 0.94859 0.95168 1.42901 0.93382 1.17729 0.92888 0.94184 0.93020 1.20700 0.96239 1.03066 1.01991 1.20188 0.93250 1.00909 1.03849 1.17496 0.85377 0.96517 0.97932 1.44209 1.05001 1.37927 1.50386 1.21460 0.90067 0.91069 0.92750 0.91483 1.22738 0.96771 1.00925 0.97832 1.22135 0.93356 0.98977 0.98740 1.22096 0.93230 0.99578 0.95275 0.90161 1.21706 0.90091 1.00827 0.93092 1.58664 1.06343 1.33479 1.40456 1.22619 0.92853 1.02587 0.97249 1.20284 0.95419 1.00608 1.01287 1.20819 0.93612 1.02292 1.02603 0.90270 0.88825 0.86017 0.76802 0.92112 0.93138 0.92323 0.91620 0.94749 0.91411 0.84184 0.83831 0.90535 0.90442 0.85985 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.07 13.93 21.82 0.30 -50.77 16 2 C 0.04 2.36 5.40 85.23 0.46 2.82 16 3 Si 0.96 45.61 24.51 68.60 1.68 47.30 16 4 H -0.26 -11.61 6.70 99.48 0.67 -10.95 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -12.31 6.87 99.48 0.68 -11.63 16 7 C -0.49 -29.18 9.55 23.38 0.22 -28.96 16 8 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 9 C 0.02 1.33 5.10 -21.27 -0.11 1.23 16 10 C -0.20 -9.80 7.11 22.48 0.16 -9.64 16 11 C -0.16 -6.60 9.82 22.15 0.22 -6.39 16 12 C 0.13 4.81 6.66 38.67 0.26 5.07 16 13 N -0.74 -21.03 5.14 -315.10 -1.62 -22.65 16 14 C 0.15 3.56 2.88 45.72 0.13 3.69 16 15 H 0.07 1.71 6.47 -2.39 -0.02 1.69 16 16 C -0.14 -3.33 6.59 31.32 0.21 -3.12 16 17 C -0.09 -1.75 6.09 31.67 0.19 -1.55 16 18 C -0.08 -1.23 3.10 -9.38 -0.03 -1.26 16 19 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 20 C 0.07 0.92 6.24 86.30 0.54 1.46 16 21 N -0.86 -9.80 9.44 -186.71 -1.76 -11.56 16 22 C -0.11 -1.93 5.99 31.79 0.19 -1.74 16 23 C -0.15 -6.22 9.14 22.15 0.20 -6.01 16 24 C -0.17 -8.27 9.74 22.48 0.22 -8.05 16 25 H 0.29 15.22 8.30 -92.71 -0.77 14.45 16 26 H 0.09 4.63 4.73 -2.91 -0.01 4.62 16 27 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 28 H 0.40 9.75 8.34 -92.71 -0.77 8.98 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.40 7.92 -2.39 -0.02 1.38 16 31 H 0.06 1.15 8.01 -2.38 -0.02 1.13 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.03 0.37 8.14 -2.39 -0.02 0.36 16 34 H 0.07 0.92 8.10 -2.38 -0.02 0.90 16 35 H 0.35 3.23 8.99 -89.69 -0.81 2.43 16 36 H 0.35 2.92 9.08 -89.70 -0.81 2.10 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.23 7.64 -2.39 -0.02 1.21 16 39 H 0.12 4.23 6.21 -2.91 -0.02 4.21 16 40 H 0.10 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -64.46 315.77 0.07 -64.39 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -1.40 Total: 25.75 kcal Atomic # 6 Polarization: -55.33 SS G_CDS: 2.86 Total: -52.46 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -3.08 Total: -84.98 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.68 Total: 47.30 kcal Total: -64.46 0.07 -64.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724049254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.755 kcal (2) G-P(sol) polarization free energy of solvation -64.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds