Wall clock time and date at job start Mon Mar 30 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86796 * 119.99921 * 2 1 4 4 H 1.48496 * 109.47492 * 274.65951 * 3 2 1 5 5 H 1.48509 * 109.46886 * 34.65755 * 3 2 1 6 6 H 1.48499 * 109.47283 * 154.65624 * 3 2 1 7 7 C 1.39863 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99933 * 162.12553 * 7 2 1 9 9 C 1.41142 * 119.99873 * 342.11506 * 7 2 1 10 10 C 1.40891 * 120.15218 * 155.08830 * 9 7 2 11 11 C 1.36340 * 119.83519 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.15863 * 0.02562 * 11 10 9 13 13 N 1.38864 * 119.83631 * 179.97438 * 12 11 10 14 14 C 1.46503 * 119.99658 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.05684 * 325.04106 * 14 13 12 16 16 C 1.54267 * 110.03059 * 86.45451 * 14 13 12 17 17 C 1.54885 * 104.19760 * 142.89514 * 16 14 13 18 18 C 1.54893 * 102.74745 * 322.05582 * 17 16 14 19 19 H 1.08993 * 110.48400 * 279.13559 * 18 17 16 20 20 C 1.52995 * 110.48714 * 156.61864 * 18 17 16 21 21 N 1.46898 * 109.47335 * 66.45467 * 20 18 17 22 22 C 1.53872 * 110.03276 * 203.61828 * 14 13 12 23 23 C 1.39562 * 120.31749 * 0.24633 * 12 11 10 24 24 C 1.36338 * 120.16036 * 359.48814 * 23 12 11 25 25 H 0.96995 * 120.00574 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.08055 * 0.04945 * 10 9 7 27 27 H 1.08003 * 119.91889 * 179.97438 * 11 10 9 28 28 H 0.96994 * 120.00181 * 359.97438 * 13 12 11 29 29 H 1.08996 * 110.48695 * 24.20926 * 16 14 13 30 30 H 1.09006 * 110.48453 * 261.57432 * 16 14 13 31 31 H 1.09006 * 110.75707 * 80.36984 * 17 16 14 32 32 H 1.08993 * 110.75649 * 203.55614 * 17 16 14 33 33 H 1.09005 * 109.47389 * 186.45791 * 20 18 17 34 34 H 1.09006 * 109.47135 * 306.45800 * 20 18 17 35 35 H 1.00892 * 111.00715 * 179.97438 * 21 20 18 36 36 H 1.00902 * 111.00068 * 303.95947 * 21 20 18 37 37 H 1.09002 * 110.03155 * 121.42935 * 22 14 13 38 38 H 1.09001 * 110.02953 * 0.02562 * 22 14 13 39 39 H 1.08000 * 119.91647 * 179.72682 * 23 12 11 40 40 H 1.08005 * 120.07945 * 180.22960 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3921 2.1033 -1.3954 5 1 1.4931 2.6222 0.7962 6 1 3.5863 1.4138 0.5993 7 6 2.0084 -1.2113 -0.0005 8 1 3.0493 -1.2337 -0.2876 9 6 1.3538 -2.4042 0.3743 10 6 1.8229 -3.6467 -0.0960 11 6 1.1853 -4.7950 0.2697 12 6 0.0703 -4.7416 1.1075 13 7 -0.5743 -5.9153 1.4754 14 6 -1.7447 -5.8634 2.3550 15 1 -1.6304 -5.0595 3.0822 16 6 -3.0234 -5.6433 1.5207 17 6 -4.0958 -6.5027 2.2351 18 6 -3.2978 -7.7601 2.6611 19 1 -3.1967 -8.4497 1.8231 20 6 -3.9797 -8.4520 3.8431 21 7 -5.2758 -8.9931 3.4126 22 6 -1.9191 -7.2093 3.0801 23 6 -0.4033 -3.5140 1.5726 24 6 0.2275 -2.3581 1.2194 25 1 -0.4851 0.8400 0.0004 26 1 2.6855 -3.6894 -0.7444 27 1 1.5435 -5.7481 -0.0904 28 1 -0.2497 -6.7694 1.1499 29 1 -2.8760 -5.9900 0.4979 30 1 -3.3090 -4.5914 1.5304 31 1 -4.4902 -5.9816 3.1075 32 1 -4.8999 -6.7664 1.5483 33 1 -3.3480 -9.2645 4.2023 34 1 -4.1355 -7.7310 4.6456 35 1 -5.7461 -9.4558 4.1759 36 1 -5.8559 -8.2692 3.0155 37 1 -1.8895 -7.0586 4.1593 38 1 -1.1328 -7.9009 2.7778 39 1 -1.2693 -3.4799 2.2170 40 1 -0.1379 -1.4090 1.5831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724049255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:52 Heat of formation + Delta-G solvation = -11.561714 kcal Electronic energy + Delta-G solvation = -18917.431064 eV Core-core repulsion = 16115.712223 eV Total energy + Delta-G solvation = -2801.718841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34345 -39.08730 -36.45095 -35.10354 -33.65005 -31.36596 -30.59158 -29.94524 -28.23955 -25.89555 -24.51974 -23.02795 -22.24869 -21.05032 -20.50326 -19.15096 -18.02487 -17.04026 -16.78290 -16.67092 -16.09088 -15.72091 -15.46543 -14.75608 -14.47426 -14.34873 -14.01244 -13.85894 -13.83704 -13.54887 -13.48706 -12.79652 -12.71696 -12.63499 -12.26027 -12.10238 -11.91916 -11.63749 -11.57050 -11.52669 -11.45352 -11.13299 -11.03262 -10.24809 -9.56859 -9.39673 -8.54456 -8.13649 -5.99746 1.11412 1.19130 1.39715 1.52444 1.59413 2.27543 2.84438 2.93125 3.55029 3.65208 3.83913 3.87837 4.01850 4.33446 4.45919 4.50510 4.51904 4.55615 4.62417 4.69613 4.75313 4.82205 4.96934 5.02103 5.09917 5.12510 5.17031 5.27189 5.33957 5.37593 5.46650 5.50778 5.72225 5.82834 5.97717 6.19648 6.27770 6.40762 6.63278 6.69310 6.90091 7.09120 7.17427 7.34964 8.48945 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.043336 B = 0.003746 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.951837 B = 7472.216694 C = 7888.361334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.034 3.966 10 C -0.196 4.196 11 C -0.168 4.168 12 C 0.115 3.885 13 N -0.744 5.744 14 C 0.154 3.846 15 H 0.059 0.941 16 C -0.138 4.138 17 C -0.111 4.111 18 C -0.081 4.081 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.860 5.860 22 C -0.115 4.115 23 C -0.173 4.173 24 C -0.144 4.144 25 H 0.282 0.718 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.395 0.605 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.349 0.651 36 H 0.344 0.656 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 -12.832 7.532 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.031 3.969 10 C -0.216 4.216 11 C -0.190 4.190 12 C 0.015 3.985 13 N -0.378 5.378 14 C 0.048 3.952 15 H 0.077 0.923 16 C -0.178 4.178 17 C -0.148 4.148 18 C -0.100 4.100 19 H 0.093 0.907 20 C -0.058 4.058 21 N -0.391 5.391 22 C -0.154 4.154 23 C -0.196 4.196 24 C -0.164 4.164 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.135 0.865 28 H 0.230 0.770 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.708 -13.067 7.148 17.253 hybrid contribution 0.135 1.481 0.249 1.508 sum -8.573 -11.586 7.398 16.200 Atomic orbital electron populations 1.69924 1.08749 1.29719 1.38678 1.26613 0.95459 1.04100 0.91880 0.85295 0.79164 0.76681 0.79107 1.19027 1.19275 1.18541 1.19584 0.97960 0.92793 1.43463 0.91481 1.17811 0.93632 0.93041 0.92377 1.20761 1.03089 0.92937 1.04827 1.20110 0.98077 0.97607 1.03206 1.17471 0.94615 0.86806 0.99576 1.44152 1.32677 1.04769 1.56218 1.21401 0.84757 0.97983 0.91089 0.92324 1.22848 0.95991 0.99454 0.99487 1.22480 0.97046 0.95274 1.00049 1.21900 0.93795 0.96092 0.98224 0.90720 1.21774 0.91293 0.97767 0.95013 1.58690 1.06634 1.35367 1.38424 1.22361 0.97571 0.94915 1.00544 1.20239 1.02045 0.91880 1.05388 1.20857 0.98913 0.96675 0.99920 0.90818 0.88596 0.86523 0.76994 0.92478 0.93404 0.91051 0.90775 0.90848 0.94899 0.83771 0.84259 0.90139 0.90646 0.87907 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.72 10.97 21.82 0.24 -46.48 16 2 C 0.03 1.67 5.13 85.22 0.44 2.11 16 3 Si 0.98 40.68 29.59 68.60 2.03 42.71 16 4 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.51 -28.98 9.03 23.38 0.21 -28.77 16 8 H 0.07 3.72 7.91 -2.91 -0.02 3.70 16 9 C 0.03 1.94 5.57 -21.27 -0.12 1.82 16 10 C -0.20 -10.00 9.74 22.48 0.22 -9.78 16 11 C -0.17 -7.47 9.82 22.15 0.22 -7.26 16 12 C 0.11 4.93 6.67 38.67 0.26 5.19 16 13 N -0.74 -24.43 5.19 -315.11 -1.64 -26.07 16 14 C 0.15 4.29 2.87 45.71 0.13 4.42 16 15 H 0.06 1.83 6.50 -2.39 -0.02 1.81 16 16 C -0.14 -3.76 6.52 31.67 0.21 -3.55 16 17 C -0.11 -2.16 5.55 31.88 0.18 -1.99 16 18 C -0.08 -1.46 3.12 -9.72 -0.03 -1.49 16 19 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 20 C 0.07 1.07 6.13 86.30 0.53 1.60 16 21 N -0.86 -11.82 9.62 -186.72 -1.80 -13.61 16 22 C -0.12 -2.34 6.14 31.32 0.19 -2.15 16 23 C -0.17 -8.27 9.13 22.15 0.20 -8.06 16 24 C -0.14 -7.89 8.63 22.47 0.19 -7.70 16 25 H 0.28 14.19 8.30 -92.71 -0.77 13.43 16 26 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 27 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 28 H 0.40 11.28 8.29 -92.71 -0.77 10.52 16 29 H 0.06 1.70 8.05 -2.39 -0.02 1.68 16 30 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.07 1.28 8.02 -2.38 -0.02 1.27 16 32 H 0.07 1.34 8.00 -2.39 -0.02 1.32 16 33 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.03 0.46 8.10 -2.38 -0.02 0.44 16 35 H 0.35 3.57 9.08 -89.70 -0.81 2.76 16 36 H 0.34 4.33 8.09 -89.69 -0.73 3.61 16 37 H 0.08 1.47 7.84 -2.39 -0.02 1.45 16 38 H 0.07 1.47 7.60 -2.39 -0.02 1.46 16 39 H 0.10 4.48 6.22 -2.91 -0.02 4.46 16 40 H 0.10 5.63 6.18 -2.91 -0.02 5.62 16 Total: -1.00 -62.88 319.46 0.41 -62.47 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -1.25 Total: 36.60 kcal Atomic # 6 Polarization: -58.45 SS G_CDS: 2.83 Total: -55.62 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -3.19 Total: -86.16 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -62.88 0.41 -62.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724049255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.905 kcal (2) G-P(sol) polarization free energy of solvation -62.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds