Wall clock time and date at job start Mon Mar 30 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86800 * 120.00204 * 2 1 4 4 H 1.48499 * 109.46940 * 270.00169 * 3 2 1 5 5 H 1.48497 * 109.47093 * 30.00529 * 3 2 1 6 6 H 1.48495 * 109.46786 * 150.00473 * 3 2 1 7 7 C 1.39867 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99546 * 197.95530 * 7 2 1 9 9 C 1.41135 * 120.00300 * 17.95370 * 7 2 1 10 10 C 1.40885 * 120.15838 * 204.61490 * 9 7 2 11 11 C 1.36337 * 119.84208 * 180.02562 * 10 9 7 12 12 C 1.39571 * 120.15510 * 359.97438 * 11 10 9 13 13 N 1.38864 * 119.83737 * 179.97438 * 12 11 10 14 14 C 1.46503 * 119.99774 * 180.02562 * 13 12 11 15 15 H 1.08996 * 110.43306 * 323.91572 * 14 13 12 16 16 C 1.54266 * 110.48425 * 86.45308 * 14 13 12 17 17 C 1.53874 * 106.59864 * 142.28964 * 16 14 13 18 18 C 1.54275 * 106.59792 * 359.97438 * 17 16 14 19 19 H 1.08995 * 110.47958 * 95.19957 * 18 17 16 20 20 C 1.52997 * 110.48573 * 217.71386 * 18 17 16 21 21 N 1.46905 * 109.47086 * 291.75532 * 20 18 17 22 22 C 1.54889 * 104.30813 * 336.45921 * 18 17 16 23 23 C 1.39558 * 120.31794 * 0.25790 * 12 11 10 24 24 C 1.36340 * 120.16311 * 359.48171 * 23 12 11 25 25 H 0.97000 * 119.99286 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.07844 * 0.03775 * 10 9 7 27 27 H 1.07994 * 119.92182 * 180.02562 * 11 10 9 28 28 H 0.97003 * 120.00077 * 359.97438 * 13 12 11 29 29 H 1.09002 * 110.03757 * 23.00301 * 16 14 13 30 30 H 1.09002 * 110.03321 * 261.57481 * 16 14 13 31 31 H 1.08999 * 110.03403 * 240.71741 * 17 16 14 32 32 H 1.08995 * 110.07771 * 119.30723 * 17 16 14 33 33 H 1.09000 * 109.47039 * 171.75753 * 20 18 17 34 34 H 1.08999 * 109.47163 * 51.75789 * 20 18 17 35 35 H 1.00903 * 110.99548 * 180.02562 * 21 20 18 36 36 H 1.00897 * 110.99655 * 303.95711 * 21 20 18 37 37 H 1.08999 * 110.75313 * 156.19139 * 22 18 17 38 38 H 1.08997 * 110.75437 * 279.55540 * 22 18 17 39 39 H 1.08001 * 119.92283 * 179.72226 * 23 12 11 40 40 H 1.07996 * 120.08521 * 180.28243 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 1.4407 2.6526 0.7001 6 1 3.5407 1.4400 0.6999 7 6 2.0083 -1.2113 -0.0005 8 1 3.0489 -1.2342 0.2878 9 6 1.3542 -2.4037 -0.3778 10 6 1.8264 -3.6473 0.0861 11 6 1.1898 -4.7952 -0.2829 12 6 0.0726 -4.7401 -1.1176 13 7 -0.5704 -5.9133 -1.4896 14 6 -1.7431 -5.8596 -2.3661 15 1 -2.3457 -4.9795 -2.1420 16 6 -1.3105 -5.8549 -3.8469 17 6 -2.3384 -6.7106 -4.6078 18 6 -3.3594 -7.2060 -3.5627 19 1 -4.2262 -6.5459 -3.5337 20 6 -3.7905 -8.6407 -3.8735 21 7 -4.5818 -8.6570 -5.1111 22 6 -2.5901 -7.1499 -2.2195 23 6 -0.3979 -3.5121 -1.5848 24 6 0.2255 -2.3558 -1.2198 25 1 -0.4849 0.8401 0.0004 26 1 2.6904 -3.6913 0.7325 27 1 1.5504 -5.7491 0.0723 28 1 -0.2426 -6.7684 -1.1698 29 1 -0.3159 -6.2894 -3.9468 30 1 -1.3137 -4.8358 -4.2336 31 1 -1.8427 -7.5605 -5.0769 32 1 -2.8406 -6.1076 -5.3642 33 1 -4.3941 -9.0249 -3.0512 34 1 -2.9069 -9.2665 -3.9989 35 1 -4.8790 -9.5942 -5.3379 36 1 -5.3723 -8.0337 -5.0431 37 1 -3.2819 -7.0670 -1.3814 38 1 -1.9470 -8.0226 -2.1061 39 1 -1.2602 -3.4772 -2.2341 40 1 -0.1423 -1.4059 -1.5784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724049256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:55 Heat of formation + Delta-G solvation = 5.240293 kcal Electronic energy + Delta-G solvation = -18878.601720 eV Core-core repulsion = 16077.611468 eV Total energy + Delta-G solvation = -2800.990251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.97441 -37.48257 -35.08247 -33.65549 -32.25166 -29.46194 -28.92804 -28.84770 -26.89613 -24.14083 -23.43918 -21.40354 -20.51721 -19.96668 -19.17904 -17.17630 -16.32285 -16.13579 -15.67485 -14.91068 -14.87534 -14.59857 -14.00704 -13.60788 -13.32460 -12.86730 -12.63301 -12.18279 -12.14044 -11.90727 -11.71075 -11.48074 -11.02307 -10.97705 -10.89708 -10.86752 -10.71940 -10.57514 -10.39756 -10.19178 -9.65617 -9.23960 -9.16238 -8.91979 -8.48972 -7.44898 -6.60761 -6.33607 -3.99568 2.94596 3.14047 3.17454 3.20748 3.39154 4.08085 4.14564 4.47302 4.62685 4.73031 4.82282 4.99436 5.25594 5.34505 5.47822 5.57612 5.70583 5.77447 5.82309 5.85869 5.98260 5.98566 6.25125 6.31099 6.32961 6.38988 6.52218 6.57716 6.85995 6.98157 7.01422 7.15569 7.24407 7.39707 7.61452 7.73422 7.89078 8.19282 8.34343 8.55156 8.75949 8.85352 9.09805 9.19618 10.40832 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041551 B = 0.003723 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.706554 B = 7519.870389 C = 7895.775206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.187 4.187 11 C -0.161 4.161 12 C 0.094 3.906 13 N -0.754 5.754 14 C 0.162 3.838 15 H 0.075 0.925 16 C -0.144 4.144 17 C -0.103 4.103 18 C -0.090 4.090 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.850 5.850 22 C -0.124 4.124 23 C -0.164 4.164 24 C -0.124 4.124 25 H 0.275 0.725 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.383 0.617 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.338 0.662 36 H 0.339 0.661 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.817 -12.411 -6.602 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.207 4.207 11 C -0.183 4.183 12 C -0.003 4.003 13 N -0.388 5.388 14 C 0.055 3.945 15 H 0.093 0.907 16 C -0.183 4.183 17 C -0.141 4.141 18 C -0.109 4.109 19 H 0.091 0.909 20 C -0.061 4.061 21 N -0.379 5.379 22 C -0.163 4.163 23 C -0.185 4.185 24 C -0.144 4.144 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.215 0.785 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.464 -11.862 -7.019 15.675 hybrid contribution -0.336 0.136 0.779 0.859 sum -7.799 -11.726 -6.241 15.404 Atomic orbital electron populations 1.69864 1.07341 1.28527 1.37846 1.25791 0.94654 1.00848 0.92769 0.86408 0.80467 0.81255 0.79057 1.19565 1.20620 1.18896 1.19369 0.97911 0.91399 1.41186 0.90987 1.17490 0.92500 0.91969 0.90983 1.20538 1.02690 0.92650 1.04860 1.19803 0.97979 0.97003 1.03489 1.17360 0.95618 0.85783 1.01513 1.43931 1.32521 1.05669 1.56681 1.21421 0.87118 0.96932 0.89030 0.90659 1.22757 0.99137 1.00082 0.96360 1.22003 0.95842 0.99171 0.97067 1.21928 0.98335 0.95487 0.95146 0.90950 1.21853 0.97458 0.96968 0.89854 1.58697 1.28760 1.13834 1.36651 1.22758 0.98521 0.98372 0.96616 1.20116 1.01521 0.91920 1.04989 1.20942 0.98178 0.96451 0.98846 0.91385 0.89140 0.89693 0.78481 0.91559 0.91946 0.91960 0.92135 0.95786 0.91026 0.84970 0.84852 0.91487 0.91267 0.89352 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.74 10.96 55.54 0.61 -21.13 16 2 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.90 19.51 29.60 -169.99 -5.03 14.48 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.47 -12.89 9.03 -37.87 -0.34 -13.24 16 8 H 0.07 1.92 7.91 -52.49 -0.41 1.51 16 9 C 0.07 2.02 5.57 -106.79 -0.60 1.42 16 10 C -0.19 -4.72 9.74 -39.27 -0.38 -5.10 16 11 C -0.16 -3.66 9.82 -39.77 -0.39 -4.05 16 12 C 0.09 2.07 6.67 -83.69 -0.56 1.52 16 13 N -0.75 -13.19 5.26 -50.35 -0.26 -13.45 16 14 C 0.16 2.44 2.78 -66.19 -0.18 2.25 16 15 H 0.08 1.26 6.58 -51.93 -0.34 0.92 16 16 C -0.14 -2.05 6.53 -25.61 -0.17 -2.22 16 17 C -0.10 -1.21 6.23 -25.61 -0.16 -1.37 16 18 C -0.09 -0.93 3.03 -88.96 -0.27 -1.20 16 19 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 20 C 0.07 0.61 6.10 -3.82 -0.02 0.59 16 21 N -0.85 -6.80 9.47 -10.37 -0.10 -6.90 16 22 C -0.12 -1.44 5.94 -24.66 -0.15 -1.59 16 23 C -0.16 -3.88 9.14 -39.77 -0.36 -4.25 16 24 C -0.12 -3.31 8.64 -39.26 -0.34 -3.65 16 25 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 26 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 27 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 28 H 0.38 5.99 8.53 -40.82 -0.35 5.64 16 29 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.73 7.74 -51.93 -0.40 0.33 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 35 H 0.34 2.12 9.08 -39.29 -0.36 1.76 16 36 H 0.34 2.40 8.99 -39.29 -0.35 2.04 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 39 H 0.09 1.93 6.25 -52.49 -0.33 1.60 16 40 H 0.12 3.24 6.16 -52.49 -0.32 2.92 16 LS Contribution 321.30 15.07 4.84 4.84 Total: -1.00 -28.55 321.30 -10.16 -38.71 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.21 Total: 12.48 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -4.01 Total: -29.03 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.25 Total: -41.49 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.55 -10.16 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724049256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.955 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds