Wall clock time and date at job start Mon Mar 30 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86800 * 120.00204 * 2 1 4 4 H 1.48499 * 109.46940 * 270.00169 * 3 2 1 5 5 H 1.48497 * 109.47093 * 30.00529 * 3 2 1 6 6 H 1.48495 * 109.46786 * 150.00473 * 3 2 1 7 7 C 1.39867 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99546 * 197.95530 * 7 2 1 9 9 C 1.41135 * 120.00300 * 17.95370 * 7 2 1 10 10 C 1.40885 * 120.15838 * 204.61490 * 9 7 2 11 11 C 1.36337 * 119.84208 * 180.02562 * 10 9 7 12 12 C 1.39571 * 120.15510 * 359.97438 * 11 10 9 13 13 N 1.38864 * 119.83737 * 179.97438 * 12 11 10 14 14 C 1.46503 * 119.99774 * 180.02562 * 13 12 11 15 15 H 1.08996 * 110.43306 * 323.91572 * 14 13 12 16 16 C 1.54266 * 110.48425 * 86.45308 * 14 13 12 17 17 C 1.53874 * 106.59864 * 142.28964 * 16 14 13 18 18 C 1.54275 * 106.59792 * 359.97438 * 17 16 14 19 19 H 1.08995 * 110.47958 * 95.19957 * 18 17 16 20 20 C 1.52997 * 110.48573 * 217.71386 * 18 17 16 21 21 N 1.46905 * 109.47086 * 291.75532 * 20 18 17 22 22 C 1.54889 * 104.30813 * 336.45921 * 18 17 16 23 23 C 1.39558 * 120.31794 * 0.25790 * 12 11 10 24 24 C 1.36340 * 120.16311 * 359.48171 * 23 12 11 25 25 H 0.97000 * 119.99286 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.07844 * 0.03775 * 10 9 7 27 27 H 1.07994 * 119.92182 * 180.02562 * 11 10 9 28 28 H 0.97003 * 120.00077 * 359.97438 * 13 12 11 29 29 H 1.09002 * 110.03757 * 23.00301 * 16 14 13 30 30 H 1.09002 * 110.03321 * 261.57481 * 16 14 13 31 31 H 1.08999 * 110.03403 * 240.71741 * 17 16 14 32 32 H 1.08995 * 110.07771 * 119.30723 * 17 16 14 33 33 H 1.09000 * 109.47039 * 171.75753 * 20 18 17 34 34 H 1.08999 * 109.47163 * 51.75789 * 20 18 17 35 35 H 1.00903 * 110.99548 * 180.02562 * 21 20 18 36 36 H 1.00897 * 110.99655 * 303.95711 * 21 20 18 37 37 H 1.08999 * 110.75313 * 156.19139 * 22 18 17 38 38 H 1.08997 * 110.75437 * 279.55540 * 22 18 17 39 39 H 1.08001 * 119.92283 * 179.72226 * 23 12 11 40 40 H 1.07996 * 120.08521 * 180.28243 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 1.4407 2.6526 0.7001 6 1 3.5407 1.4400 0.6999 7 6 2.0083 -1.2113 -0.0005 8 1 3.0489 -1.2342 0.2878 9 6 1.3542 -2.4037 -0.3778 10 6 1.8264 -3.6473 0.0861 11 6 1.1898 -4.7952 -0.2829 12 6 0.0726 -4.7401 -1.1176 13 7 -0.5704 -5.9133 -1.4896 14 6 -1.7431 -5.8596 -2.3661 15 1 -2.3457 -4.9795 -2.1420 16 6 -1.3105 -5.8549 -3.8469 17 6 -2.3384 -6.7106 -4.6078 18 6 -3.3594 -7.2060 -3.5627 19 1 -4.2262 -6.5459 -3.5337 20 6 -3.7905 -8.6407 -3.8735 21 7 -4.5818 -8.6570 -5.1111 22 6 -2.5901 -7.1499 -2.2195 23 6 -0.3979 -3.5121 -1.5848 24 6 0.2255 -2.3558 -1.2198 25 1 -0.4849 0.8401 0.0004 26 1 2.6904 -3.6913 0.7325 27 1 1.5504 -5.7491 0.0723 28 1 -0.2426 -6.7684 -1.1698 29 1 -0.3159 -6.2894 -3.9468 30 1 -1.3137 -4.8358 -4.2336 31 1 -1.8427 -7.5605 -5.0769 32 1 -2.8406 -6.1076 -5.3642 33 1 -4.3941 -9.0249 -3.0512 34 1 -2.9069 -9.2665 -3.9989 35 1 -4.8790 -9.5942 -5.3379 36 1 -5.3723 -8.0337 -5.0431 37 1 -3.2819 -7.0670 -1.3814 38 1 -1.9470 -8.0226 -2.1061 39 1 -1.2602 -3.4772 -2.2341 40 1 -0.1423 -1.4059 -1.5784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724049256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:54 Heat of formation + Delta-G solvation = -12.230333 kcal Electronic energy + Delta-G solvation = -18879.359303 eV Core-core repulsion = 16077.611468 eV Total energy + Delta-G solvation = -2801.747835 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28433 -39.06201 -36.44198 -35.10804 -33.71843 -31.35876 -30.61277 -29.84924 -28.27014 -25.91617 -24.37758 -23.08111 -22.25652 -21.09249 -20.44588 -19.14932 -17.89862 -16.99496 -16.95905 -16.68907 -15.98431 -15.68068 -15.30074 -14.89306 -14.64342 -14.36759 -14.33208 -13.84850 -13.72910 -13.44523 -13.14024 -12.79441 -12.75559 -12.43514 -12.35634 -12.13337 -11.91577 -11.81993 -11.56668 -11.54632 -11.28450 -11.13841 -11.02227 -10.26848 -9.51993 -9.39499 -8.54474 -8.13811 -5.99888 1.11305 1.19449 1.39859 1.52545 1.59498 2.27545 2.84466 2.89214 3.58832 3.68235 3.83090 3.89023 4.08563 4.27820 4.46661 4.49092 4.52134 4.56530 4.60689 4.72219 4.80153 4.90652 4.94413 5.03076 5.07904 5.16627 5.24033 5.26036 5.31246 5.43931 5.46854 5.54703 5.72042 5.83050 5.97991 6.19776 6.28714 6.40672 6.65170 6.69179 6.89793 7.09108 7.17504 7.35704 8.48866 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041551 B = 0.003723 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.706554 B = 7519.870389 C = 7895.775206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.506 4.506 8 H 0.067 0.933 9 C 0.034 3.966 10 C -0.196 4.196 11 C -0.167 4.167 12 C 0.115 3.885 13 N -0.743 5.743 14 C 0.154 3.846 15 H 0.057 0.943 16 C -0.140 4.140 17 C -0.094 4.094 18 C -0.083 4.083 19 H 0.074 0.926 20 C 0.075 3.925 21 N -0.859 5.859 22 C -0.113 4.113 23 C -0.174 4.174 24 C -0.144 4.144 25 H 0.282 0.718 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.396 0.604 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.349 0.651 36 H 0.345 0.655 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.509 -14.183 -7.011 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.537 4.537 8 H 0.085 0.915 9 C 0.031 3.969 10 C -0.216 4.216 11 C -0.189 4.189 12 C 0.015 3.985 13 N -0.377 5.377 14 C 0.047 3.953 15 H 0.075 0.925 16 C -0.180 4.180 17 C -0.132 4.132 18 C -0.102 4.102 19 H 0.093 0.907 20 C -0.056 4.056 21 N -0.390 5.390 22 C -0.151 4.151 23 C -0.196 4.196 24 C -0.164 4.164 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.136 0.864 28 H 0.231 0.769 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.180 -13.692 -7.443 17.601 hybrid contribution -0.191 0.505 0.855 1.011 sum -8.372 -13.187 -6.588 16.952 Atomic orbital electron populations 1.69929 1.08752 1.29722 1.38632 1.26622 0.95470 1.04113 0.91887 0.85284 0.79043 0.76561 0.79231 1.19008 1.19503 1.18458 1.19592 0.97996 0.92801 1.43361 0.91461 1.17812 0.93621 0.93077 0.92358 1.20760 1.03070 0.92894 1.04893 1.20107 0.97861 0.97645 1.03287 1.17460 0.94795 0.86730 0.99490 1.43979 1.32620 1.04759 1.56306 1.21605 0.86416 0.98364 0.88887 0.92475 1.22675 0.99563 0.99619 0.96121 1.21921 0.95425 0.98741 0.97124 1.21881 0.97785 0.96835 0.93737 0.90730 1.21745 0.97793 0.95449 0.90618 1.58669 1.29208 1.14857 1.36217 1.22684 0.98213 0.96587 0.97626 1.20242 1.01945 0.91955 1.05459 1.20865 0.98977 0.96674 0.99903 0.90809 0.88540 0.86397 0.76882 0.92448 0.93694 0.91521 0.92113 0.94715 0.91077 0.83747 0.84242 0.90811 0.89966 0.88043 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.84 10.96 21.82 0.24 -46.60 16 2 C 0.03 1.65 5.13 85.22 0.44 2.09 16 3 Si 0.98 40.87 29.60 68.60 2.03 42.90 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.51 -29.01 9.03 23.38 0.21 -28.80 16 8 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 9 C 0.03 1.94 5.57 -21.27 -0.12 1.82 16 10 C -0.20 -10.00 9.74 22.47 0.22 -9.78 16 11 C -0.17 -7.42 9.82 22.15 0.22 -7.20 16 12 C 0.11 4.94 6.67 38.67 0.26 5.20 16 13 N -0.74 -24.46 5.26 -313.22 -1.65 -26.11 16 14 C 0.15 4.36 2.78 46.12 0.13 4.49 16 15 H 0.06 1.86 6.58 -2.39 -0.02 1.85 16 16 C -0.14 -3.85 6.53 31.32 0.20 -3.64 16 17 C -0.09 -2.02 6.23 31.32 0.20 -1.82 16 18 C -0.08 -1.50 3.03 -9.72 -0.03 -1.53 16 19 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 20 C 0.07 1.08 6.10 86.30 0.53 1.61 16 21 N -0.86 -11.32 9.47 -186.71 -1.77 -13.09 16 22 C -0.11 -2.29 5.94 31.94 0.19 -2.10 16 23 C -0.17 -8.37 9.14 22.15 0.20 -8.17 16 24 C -0.14 -7.98 8.64 22.48 0.19 -7.78 16 25 H 0.28 14.25 8.30 -92.71 -0.77 13.48 16 26 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 27 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 28 H 0.40 11.17 8.53 -92.71 -0.79 10.38 16 29 H 0.06 1.67 8.04 -2.39 -0.02 1.65 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.40 7.74 -2.39 -0.02 1.38 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 1.06 8.01 -2.39 -0.02 1.04 16 35 H 0.35 3.40 9.08 -89.69 -0.81 2.58 16 36 H 0.34 3.95 8.99 -89.70 -0.81 3.15 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.50 7.94 -2.39 -0.02 1.48 16 39 H 0.10 4.50 6.25 -2.91 -0.02 4.49 16 40 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 Total: -1.00 -63.11 321.30 0.34 -62.78 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -1.36 Total: 35.74 kcal Atomic # 6 Polarization: -58.46 SS G_CDS: 2.84 Total: -55.62 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -3.18 Total: -85.80 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -63.11 0.34 -62.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724049256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.546 kcal (2) G-P(sol) polarization free energy of solvation -63.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds