Wall clock time and date at job start Mon Mar 30 2020 06:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86798 * 119.99806 * 2 1 4 4 H 1.48507 * 109.47282 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47481 * 299.99867 * 3 2 1 6 6 H 1.48500 * 109.47366 * 60.00145 * 3 2 1 7 7 C 1.39857 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00129 * 197.97386 * 7 2 1 9 9 C 1.41145 * 120.00033 * 17.96172 * 7 2 1 10 10 C 1.40886 * 120.15372 * 204.60927 * 9 7 2 11 11 C 1.36347 * 119.83044 * 180.02562 * 10 9 7 12 12 C 1.39563 * 120.16122 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.83709 * 179.72367 * 12 11 10 14 14 C 1.46500 * 119.99656 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.02119 * 34.30411 * 14 13 12 16 16 C 1.53879 * 110.03546 * 272.90480 * 14 13 12 17 17 C 1.54261 * 106.60016 * 240.71834 * 16 14 13 18 18 C 1.54881 * 104.19697 * 23.60985 * 17 16 14 19 19 H 1.08996 * 110.75978 * 80.37171 * 18 17 16 20 20 C 1.53008 * 110.75541 * 203.74138 * 18 17 16 21 21 N 1.46896 * 109.47249 * 293.54755 * 20 18 17 22 22 C 1.54268 * 110.03111 * 155.68964 * 14 13 12 23 23 C 1.39558 * 120.31849 * 359.97438 * 12 11 10 24 24 C 1.36341 * 120.16209 * 0.02562 * 23 12 11 25 25 H 0.96996 * 119.99682 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.08530 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.91673 * 179.97438 * 11 10 9 28 28 H 0.96998 * 120.00699 * 359.97438 * 13 12 11 29 29 H 1.09004 * 110.02644 * 0.02562 * 16 14 13 30 30 H 1.09002 * 110.02884 * 121.43094 * 16 14 13 31 31 H 1.09001 * 110.48491 * 142.29017 * 17 16 14 32 32 H 1.08999 * 110.48529 * 264.79322 * 17 16 14 33 33 H 1.09000 * 109.46786 * 53.54762 * 20 18 17 34 34 H 1.08997 * 109.47031 * 173.54400 * 20 18 17 35 35 H 1.00902 * 110.99966 * 56.04443 * 21 20 18 36 36 H 1.00894 * 111.00409 * 180.02562 * 21 20 18 37 37 H 1.09000 * 110.49120 * 214.35001 * 22 14 13 38 38 H 1.08998 * 110.48538 * 336.99982 * 22 14 13 39 39 H 1.08002 * 119.92209 * 179.97438 * 23 12 11 40 40 H 1.08007 * 120.08380 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7031 1.3465 -0.0006 5 1 1.8843 2.3965 -1.2125 6 1 1.8843 2.3965 1.2125 7 6 2.0084 -1.2112 -0.0005 8 1 3.0489 -1.2341 0.2881 9 6 1.3543 -2.4036 -0.3780 10 6 1.8267 -3.6472 0.0858 11 6 1.1901 -4.7951 -0.2834 12 6 0.0736 -4.7400 -1.1190 13 7 -0.5661 -5.9136 -1.4954 14 6 -1.7388 -5.8598 -2.3719 15 1 -1.6347 -5.0418 -3.0847 16 6 -3.0152 -5.6697 -1.5338 17 6 -3.9069 -6.8991 -1.8038 18 6 -2.9140 -7.9948 -2.2644 19 1 -2.4197 -8.4531 -1.4079 20 6 -3.6270 -9.0519 -3.1103 21 7 -4.5843 -9.7858 -2.2720 22 6 -1.8988 -7.1978 -3.1230 23 6 -0.3998 -3.5116 -1.5822 24 6 0.2267 -2.3558 -1.2212 25 1 -0.4849 0.8400 0.0004 26 1 2.6908 -3.6913 0.7321 27 1 1.5513 -5.7492 0.0710 28 1 -0.2367 -6.7689 -1.1781 29 1 -2.7620 -5.6169 -0.4749 30 1 -3.5309 -4.7597 -1.8403 31 1 -4.4186 -7.2069 -0.8919 32 1 -4.6293 -6.6810 -2.5904 33 1 -4.1586 -8.5649 -3.9278 34 1 -2.8929 -9.7471 -3.5174 35 1 -5.2367 -9.1549 -1.8311 36 1 -5.0682 -10.4905 -2.8078 37 1 -2.2955 -7.0283 -4.1240 38 1 -0.9452 -7.7234 -3.1735 39 1 -1.2642 -3.4765 -2.2289 40 1 -0.1410 -1.4058 -1.5801 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724049257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:57 Heat of formation + Delta-G solvation = -11.300919 kcal Electronic energy + Delta-G solvation = -18950.232341 eV Core-core repulsion = 16148.524809 eV Total energy + Delta-G solvation = -2801.707532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35926 -39.06665 -36.40758 -35.10413 -33.61334 -31.36065 -30.54758 -29.92569 -28.30426 -25.93663 -24.56543 -23.01488 -22.27323 -20.81730 -20.56943 -19.14956 -18.01011 -17.04195 -16.76136 -16.67066 -16.20079 -15.67991 -15.42476 -14.81357 -14.49663 -14.26750 -14.11768 -13.88515 -13.77743 -13.53254 -13.47660 -12.78341 -12.73072 -12.59189 -12.25864 -12.02514 -11.90340 -11.63650 -11.54784 -11.49305 -11.48369 -11.12025 -11.05062 -10.25731 -9.56001 -9.39352 -8.54422 -8.13389 -5.99422 1.11047 1.19270 1.39878 1.54243 1.58486 2.27679 2.84438 2.94197 3.53822 3.65590 3.81366 3.87543 4.05496 4.35871 4.45529 4.50736 4.51710 4.55906 4.63367 4.76601 4.78551 4.80202 4.96535 5.03194 5.09933 5.12260 5.16885 5.27189 5.36201 5.37180 5.47173 5.52533 5.72883 5.83236 5.98159 6.19989 6.28519 6.41164 6.63603 6.69826 6.90765 7.09425 7.17840 7.35433 8.49107 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.048031 B = 0.003725 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.818789 B = 7514.400006 C = 7835.664831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.506 4.506 8 H 0.067 0.933 9 C 0.034 3.966 10 C -0.196 4.196 11 C -0.169 4.169 12 C 0.116 3.884 13 N -0.742 5.742 14 C 0.153 3.847 15 H 0.059 0.941 16 C -0.140 4.140 17 C -0.109 4.109 18 C -0.083 4.083 19 H 0.070 0.930 20 C 0.074 3.926 21 N -0.862 5.862 22 C -0.115 4.115 23 C -0.174 4.174 24 C -0.143 4.143 25 H 0.281 0.719 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.394 0.606 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.344 0.656 36 H 0.349 0.651 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 -13.704 -6.933 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.537 4.537 8 H 0.085 0.915 9 C 0.031 3.969 10 C -0.216 4.216 11 C -0.191 4.191 12 C 0.017 3.983 13 N -0.376 5.376 14 C 0.046 3.954 15 H 0.077 0.923 16 C -0.179 4.179 17 C -0.147 4.147 18 C -0.102 4.102 19 H 0.088 0.912 20 C -0.057 4.057 21 N -0.393 5.393 22 C -0.153 4.153 23 C -0.196 4.196 24 C -0.163 4.163 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.134 0.866 28 H 0.229 0.771 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.485 -13.712 -6.625 17.433 hybrid contribution -0.207 1.239 -0.173 1.268 sum -8.691 -12.473 -6.799 16.653 Atomic orbital electron populations 1.69933 1.08738 1.29648 1.38757 1.26612 0.95464 1.04096 0.91903 0.85252 0.79379 0.76882 0.78677 1.18468 1.19127 1.19358 1.19603 0.97964 0.92809 1.43331 0.91530 1.17814 0.93633 0.93027 0.92452 1.20752 1.03034 0.92914 1.04868 1.20105 0.98069 0.97575 1.03329 1.17458 0.94615 0.86801 0.99456 1.44086 1.32511 1.04589 1.56446 1.21380 0.84743 0.98231 0.91005 0.92258 1.22686 0.96617 0.98692 0.99918 1.22331 0.97224 0.93788 1.01320 1.22087 0.95642 0.94436 0.98013 0.91167 1.21720 0.95258 0.95058 0.93658 1.58678 1.23926 1.19379 1.37270 1.22626 0.99865 0.93838 0.98997 1.20239 1.02173 0.91850 1.05319 1.20868 0.98894 0.96707 0.99875 0.90831 0.88644 0.86605 0.77122 0.93399 0.92559 0.91497 0.90741 0.94583 0.90922 0.84294 0.83761 0.89310 0.90677 0.87847 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.75 10.96 21.81 0.24 -46.51 16 2 C 0.03 1.65 5.13 85.22 0.44 2.09 16 3 Si 0.98 40.79 29.60 68.60 2.03 42.82 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 7 C -0.51 -28.98 9.03 23.38 0.21 -28.77 16 8 H 0.07 3.71 7.91 -2.91 -0.02 3.69 16 9 C 0.03 1.91 5.57 -21.27 -0.12 1.79 16 10 C -0.20 -10.01 9.74 22.48 0.22 -9.79 16 11 C -0.17 -7.54 9.82 22.15 0.22 -7.32 16 12 C 0.12 4.99 6.67 38.67 0.26 5.25 16 13 N -0.74 -24.42 5.08 -315.12 -1.60 -26.02 16 14 C 0.15 4.23 2.90 45.72 0.13 4.37 16 15 H 0.06 1.83 6.43 -2.39 -0.02 1.82 16 16 C -0.14 -3.77 6.59 31.32 0.21 -3.56 16 17 C -0.11 -2.13 5.51 31.66 0.17 -1.95 16 18 C -0.08 -1.52 3.15 -9.46 -0.03 -1.55 16 19 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 20 C 0.07 1.08 6.28 86.31 0.54 1.62 16 21 N -0.86 -12.04 9.62 -186.72 -1.80 -13.83 16 22 C -0.11 -2.30 5.89 31.71 0.19 -2.11 16 23 C -0.17 -8.28 9.13 22.15 0.20 -8.07 16 24 C -0.14 -7.88 8.64 22.47 0.19 -7.69 16 25 H 0.28 14.17 8.30 -92.71 -0.77 13.40 16 26 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 27 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 28 H 0.39 11.44 8.57 -92.71 -0.79 10.65 16 29 H 0.05 1.53 7.92 -2.39 -0.02 1.51 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.28 8.01 -2.39 -0.02 1.26 16 32 H 0.07 1.25 8.02 -2.39 -0.02 1.23 16 33 H 0.04 0.47 8.10 -2.39 -0.02 0.45 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.34 4.42 8.11 -89.69 -0.73 3.69 16 36 H 0.35 3.60 9.08 -89.70 -0.81 2.78 16 37 H 0.09 1.52 8.05 -2.39 -0.02 1.50 16 38 H 0.07 1.49 7.98 -2.39 -0.02 1.47 16 39 H 0.10 4.49 6.20 -2.91 -0.02 4.48 16 40 H 0.10 5.66 6.16 -2.91 -0.02 5.65 16 Total: -1.00 -63.00 320.01 0.43 -62.58 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: -1.28 Total: 36.66 kcal Atomic # 6 Polarization: -58.52 SS G_CDS: 2.83 Total: -55.69 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -3.16 Total: -86.36 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -63.00 0.43 -62.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724049257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.275 kcal (2) G-P(sol) polarization free energy of solvation -63.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds