Wall clock time and date at job start Mon Mar 30 2020 06:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99608 * 2 1 4 4 H 1.48497 * 109.47348 * 240.00408 * 3 2 1 5 5 H 1.48496 * 109.47387 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46836 * 120.00597 * 3 2 1 7 7 C 1.39924 * 120.00543 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00608 * 197.86701 * 7 2 1 9 9 C 1.41409 * 119.99918 * 17.85831 * 7 2 1 10 10 C 1.40789 * 120.20966 * 204.46054 * 9 7 2 11 11 C 1.37648 * 119.89265 * 179.97438 * 10 9 7 12 12 C 1.38521 * 120.32599 * 359.97438 * 11 10 9 13 13 C 1.39295 * 120.42602 * 0.02562 * 12 11 10 14 14 N 1.39675 * 119.95368 * 180.27358 * 13 12 11 15 15 C 1.46499 * 120.00010 * 359.71792 * 14 13 12 16 16 H 1.08998 * 110.43866 * 325.70325 * 15 14 13 17 17 C 1.54898 * 110.48487 * 88.24422 * 15 14 13 18 18 C 1.55028 * 102.68399 * 156.52075 * 17 15 14 19 19 C 1.54270 * 104.27830 * 322.23146 * 18 17 15 20 20 H 1.08998 * 110.03243 * 264.23724 * 19 18 17 21 21 C 1.53002 * 110.07163 * 142.82900 * 19 18 17 22 22 N 1.46894 * 109.47524 * 67.80777 * 21 19 18 23 23 C 1.53878 * 106.59936 * 23.51932 * 19 18 17 24 24 C 1.38317 * 120.09235 * 359.97438 * 13 12 11 25 25 H 0.96994 * 120.00612 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.05419 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.83512 * 180.02562 * 11 10 9 28 28 H 1.08003 * 119.78716 * 180.02562 * 12 11 10 29 29 H 0.96999 * 120.00486 * 179.72253 * 14 13 12 30 30 H 1.09001 * 110.75517 * 274.93517 * 17 15 14 31 31 H 1.08993 * 110.75541 * 38.30459 * 17 15 14 32 32 H 1.09003 * 110.52498 * 203.49055 * 18 17 15 33 33 H 1.08995 * 110.48485 * 80.95443 * 18 17 15 34 34 H 1.09003 * 109.46983 * 187.81247 * 21 19 18 35 35 H 1.08999 * 109.46688 * 307.80374 * 21 19 18 36 36 H 1.00897 * 111.00556 * 179.97438 * 22 21 19 37 37 H 1.00897 * 110.99587 * 303.95611 * 22 21 19 38 38 H 1.08991 * 110.03143 * 240.71596 * 23 19 18 39 39 H 1.08997 * 110.06868 * 119.30295 * 23 19 18 40 40 H 1.08001 * 120.16112 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0958 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2117 -0.0005 8 1 3.0490 -1.2344 0.2864 9 6 1.3522 -2.4067 -0.3766 10 6 1.8259 -3.6499 0.0840 11 6 1.1821 -4.8091 -0.2857 12 6 0.0693 -4.7590 -1.1090 13 6 -0.4109 -3.5363 -1.5725 14 7 -1.5372 -3.4969 -2.3975 15 6 -2.2091 -4.7413 -2.7798 16 1 -1.4831 -5.5461 -2.8946 17 6 -3.2807 -5.1238 -1.7288 18 6 -4.2491 -6.0215 -2.5411 19 6 -4.3050 -5.3587 -3.9330 20 1 -5.1699 -4.6984 -3.9977 21 6 -4.3818 -6.4304 -5.0223 22 7 -5.6762 -7.1201 -4.9404 23 6 -3.0080 -4.5447 -4.0848 24 6 0.2225 -2.3608 -1.2119 25 1 -0.4851 0.8399 0.0004 26 1 2.6924 -3.6940 0.7271 27 1 1.5461 -5.7622 0.0685 28 1 -0.4294 -5.6739 -1.3933 29 1 -1.8746 -2.6456 -2.7174 30 1 -2.8330 -5.6808 -0.9057 31 1 -3.7953 -4.2361 -1.3611 32 1 -5.2379 -6.0298 -2.0825 33 1 -3.8563 -7.0354 -2.6169 34 1 -4.2812 -5.9615 -6.0011 35 1 -3.5764 -7.1511 -4.8802 36 1 -5.7516 -7.8331 -5.6503 37 1 -5.8213 -7.5085 -4.0205 38 1 -3.2434 -3.4896 -4.2231 39 1 -2.4325 -4.9131 -4.9340 40 1 -0.1486 -1.4122 -1.5709 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724068526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:20 Heat of formation + Delta-G solvation = 1.219798 kcal Electronic energy + Delta-G solvation = -19046.695988 eV Core-core repulsion = 16245.531395 eV Total energy + Delta-G solvation = -2801.164593 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.01385 -37.39398 -34.98899 -33.56359 -32.54195 -29.42756 -28.96872 -28.63890 -25.92519 -25.16896 -23.52747 -21.22442 -20.52134 -19.79114 -19.38163 -17.26842 -16.09659 -15.94923 -15.77868 -14.94173 -14.82601 -14.30706 -14.28330 -13.53397 -13.07989 -12.92159 -12.80770 -12.60365 -12.22608 -12.03808 -11.54357 -11.31874 -11.03876 -11.02207 -10.93071 -10.64990 -10.60196 -10.56109 -10.47056 -10.23015 -9.57476 -9.40208 -9.19126 -8.92793 -8.69673 -7.27204 -6.69352 -6.11080 -4.27707 2.91436 3.10891 3.14354 3.26919 3.37722 4.00224 4.21369 4.42053 4.61019 4.75956 4.82941 4.88622 5.26111 5.43447 5.50049 5.54609 5.68301 5.72499 5.81154 5.87386 5.93757 5.98111 6.12508 6.32133 6.35174 6.45117 6.48504 6.66288 6.90179 6.93131 7.15895 7.17923 7.19039 7.42681 7.48889 7.86456 8.00312 8.15507 8.21391 8.53441 8.76917 8.88459 9.05095 9.16445 10.29151 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032471 B = 0.004185 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.113127 B = 6688.233930 C = 7228.253692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.139 3.861 10 C -0.258 4.258 11 C -0.067 4.067 12 C -0.300 4.300 13 C 0.217 3.783 14 N -0.753 5.753 15 C 0.159 3.841 16 H 0.077 0.923 17 C -0.138 4.138 18 C -0.120 4.120 19 C -0.088 4.088 20 H 0.079 0.921 21 C 0.067 3.933 22 N -0.853 5.853 23 C -0.126 4.126 24 C -0.232 4.232 25 H 0.277 0.723 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.388 0.612 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.338 0.662 37 H 0.340 0.660 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.409 -8.485 -7.456 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.136 3.864 10 C -0.279 4.279 11 C -0.086 4.086 12 C -0.322 4.322 13 C 0.118 3.882 14 N -0.385 5.385 15 C 0.052 3.948 16 H 0.095 0.905 17 C -0.177 4.177 18 C -0.158 4.158 19 C -0.108 4.108 20 H 0.097 0.903 21 C -0.063 4.063 22 N -0.382 5.382 23 C -0.164 4.164 24 C -0.256 4.256 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.222 0.778 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.947 -7.787 -7.615 14.095 hybrid contribution 0.756 0.213 0.179 0.806 sum -8.190 -7.573 -7.436 13.406 Atomic orbital electron populations 1.69857 1.07480 1.28837 1.35628 1.25864 0.94666 1.01038 0.92343 0.86445 0.80197 0.80589 0.79877 1.18946 1.20491 1.19126 1.19518 0.98051 0.91363 1.40665 0.90675 1.17313 0.90101 0.91790 0.87186 1.20854 1.04863 0.92961 1.09215 1.20281 0.95192 0.96198 0.96890 1.19894 1.04596 0.94400 1.13360 1.17654 0.86202 0.94262 0.90046 1.44510 1.31248 1.06037 1.56689 1.21460 0.92836 0.88567 0.91934 0.90516 1.23022 0.96776 0.99499 0.98439 1.22415 0.99605 0.98652 0.95097 1.21737 0.98166 0.96536 0.94313 0.90264 1.21948 0.89415 0.95749 0.99228 1.58732 1.34100 1.36001 1.09402 1.22416 0.95510 1.00429 0.98086 1.20723 1.02666 0.95050 1.07170 0.91175 0.89476 0.89758 0.89646 0.77784 0.91428 0.91251 0.91774 0.92188 0.91208 0.95379 0.84988 0.84715 0.91267 0.91520 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.85 10.95 55.55 0.61 -20.25 16 2 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 3 Si 0.90 19.07 29.60 -169.99 -5.03 14.04 16 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 7 C -0.47 -12.73 9.05 -37.74 -0.34 -13.07 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.14 3.83 5.57 -106.85 -0.60 3.23 16 10 C -0.26 -6.62 9.79 -38.83 -0.38 -7.00 16 11 C -0.07 -1.56 10.02 -39.69 -0.40 -1.96 16 12 C -0.30 -6.85 9.23 -39.08 -0.36 -7.21 16 13 C 0.22 5.08 6.64 -83.86 -0.56 4.52 16 14 N -0.75 -14.32 5.34 -50.62 -0.27 -14.59 16 15 C 0.16 2.45 2.85 -66.27 -0.19 2.26 16 16 H 0.08 1.25 6.50 -51.93 -0.34 0.91 16 17 C -0.14 -1.99 6.59 -24.66 -0.16 -2.15 16 18 C -0.12 -1.34 5.56 -24.99 -0.14 -1.47 16 19 C -0.09 -0.96 3.15 -89.50 -0.28 -1.24 16 20 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 21 C 0.07 0.64 5.90 -3.83 -0.02 0.62 16 22 N -0.85 -7.32 9.62 -10.37 -0.10 -7.42 16 23 C -0.13 -1.56 6.19 -25.61 -0.16 -1.71 16 24 C -0.23 -6.12 8.53 -38.68 -0.33 -6.45 16 25 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 26 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 27 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.09 1.76 6.22 -52.48 -0.33 1.43 16 29 H 0.39 7.10 8.35 -40.82 -0.34 6.76 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.63 7.76 -51.93 -0.40 0.22 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.03 0.27 8.01 -51.93 -0.42 -0.15 16 36 H 0.34 2.31 9.08 -39.29 -0.36 1.95 16 37 H 0.34 2.68 8.23 -39.29 -0.32 2.35 16 38 H 0.07 0.86 7.72 -51.93 -0.40 0.46 16 39 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 40 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 LS Contribution 319.78 15.07 4.82 4.82 Total: -1.00 -28.33 319.78 -10.11 -38.44 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -6.13 Total: 14.67 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -4.01 Total: -29.72 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.24 Total: -42.25 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.33 -10.11 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724068526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.659 kcal (2) G-P(sol) polarization free energy of solvation -28.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds