Wall clock time and date at job start Mon Mar 30 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86794 * 119.99989 * 2 1 4 4 H 1.48501 * 109.47144 * 275.41223 * 3 2 1 5 5 H 1.48500 * 109.47496 * 35.41359 * 3 2 1 6 6 H 1.48503 * 109.47204 * 155.41291 * 3 2 1 7 7 C 1.39930 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00335 * 341.72940 * 7 2 1 9 9 C 1.41414 * 119.99773 * 161.72737 * 7 2 1 10 10 C 1.40786 * 120.20486 * 330.21031 * 9 7 2 11 11 C 1.37647 * 119.89145 * 179.97438 * 10 9 7 12 12 C 1.38519 * 120.32613 * 359.97438 * 11 10 9 13 13 C 1.39293 * 120.42563 * 0.04283 * 12 11 10 14 14 N 1.39686 * 119.95670 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99393 * 0.02562 * 14 13 12 16 16 H 1.09000 * 110.82254 * 328.33265 * 15 14 13 17 17 C 1.54959 * 110.76743 * 91.63350 * 15 14 13 18 18 C 1.54260 * 104.16364 * 156.22005 * 17 15 14 19 19 C 1.53876 * 106.64243 * 336.44325 * 18 17 15 20 20 H 1.09006 * 110.03164 * 119.25745 * 19 18 17 21 21 C 1.52990 * 110.03456 * 240.64433 * 19 18 17 22 22 N 1.46902 * 109.47429 * 293.54082 * 21 19 18 23 23 C 1.54272 * 106.59174 * 359.97438 * 19 18 17 24 24 C 1.38323 * 120.09615 * 0.25044 * 13 12 11 25 25 H 0.96992 * 119.99988 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.05588 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.83640 * 179.97438 * 11 10 9 28 28 H 1.07999 * 119.78932 * 180.02562 * 12 11 10 29 29 H 0.96994 * 120.00292 * 179.97438 * 14 13 12 30 30 H 1.09006 * 110.47800 * 37.56373 * 17 15 14 31 31 H 1.09006 * 110.52927 * 274.89683 * 17 15 14 32 32 H 1.09006 * 110.03541 * 217.13598 * 18 17 15 33 33 H 1.08998 * 110.03508 * 95.75497 * 18 17 15 34 34 H 1.09001 * 109.47525 * 53.54406 * 21 19 18 35 35 H 1.09006 * 109.47146 * 173.54253 * 21 19 18 36 36 H 1.00906 * 110.99455 * 56.04866 * 22 21 19 37 37 H 1.00897 * 111.00303 * 179.97438 * 22 21 19 38 38 H 1.09005 * 110.48315 * 142.28713 * 23 19 18 39 39 H 1.08996 * 110.48378 * 264.79689 * 23 19 18 40 40 H 1.07999 * 120.16276 * 179.70277 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5017 2.6170 0.8113 6 1 3.5924 1.4098 0.5825 7 6 2.0079 -1.2119 0.0005 8 1 1.5088 -2.1234 0.2941 9 6 3.3686 -1.2430 -0.3834 10 6 3.8629 -0.3110 -1.3157 11 6 5.1886 -0.3468 -1.6845 12 6 6.0400 -1.2954 -1.1424 13 6 5.5651 -2.2241 -0.2192 14 7 6.4322 -3.1768 0.3209 15 6 7.8401 -3.1983 -0.0833 16 1 7.9523 -2.8638 -1.1146 17 6 8.6991 -2.3307 0.8710 18 6 10.1212 -2.9120 0.7322 19 6 9.9589 -4.3622 0.2441 20 1 10.4493 -4.4884 -0.7212 21 6 10.5585 -5.3295 1.2666 22 7 12.0139 -5.1391 1.3262 23 6 8.4432 -4.6127 0.1037 24 6 4.2347 -2.2079 0.1593 25 1 -0.4850 0.8400 0.0004 26 1 3.2031 0.4308 -1.7408 27 1 5.5668 0.3684 -2.4001 28 1 7.0787 -1.3154 -1.4375 29 1 6.1023 -3.8235 0.9641 30 1 8.3454 -2.4285 1.8975 31 1 8.6815 -1.2867 0.5583 32 1 10.6265 -2.8974 1.6980 33 1 10.6912 -2.3346 0.0043 34 1 10.1261 -5.1349 2.2481 35 1 10.3381 -6.3549 0.9694 36 1 12.2446 -4.1796 1.5368 37 1 12.4336 -5.7668 1.9954 38 1 8.2384 -5.2331 -0.7689 39 1 8.0490 -5.0817 1.0051 40 1 3.8643 -2.9305 0.8714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724068527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:22 Heat of formation + Delta-G solvation = 2.112733 kcal Electronic energy + Delta-G solvation = -18955.707714 eV Core-core repulsion = 16154.581842 eV Total energy + Delta-G solvation = -2801.125873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.18288 -37.68496 -35.18281 -33.61447 -32.64179 -30.16668 -29.10516 -28.90266 -26.26181 -25.07635 -23.67668 -21.25707 -21.05092 -19.75308 -19.40493 -17.51415 -16.56806 -16.04418 -15.80403 -15.40069 -14.85656 -14.58521 -14.22623 -13.57763 -13.42520 -13.19144 -12.75182 -12.58978 -12.48919 -12.27701 -11.92855 -11.66144 -11.28190 -11.14624 -10.87934 -10.77886 -10.64884 -10.60329 -10.47198 -10.38080 -9.70491 -9.46536 -9.20182 -9.00366 -8.85310 -7.56447 -6.85984 -6.42254 -4.41593 2.72971 2.95066 3.20224 3.30214 3.42087 3.95892 4.08561 4.35897 4.50030 4.55141 4.65126 4.90810 5.15639 5.22846 5.34014 5.40498 5.56016 5.56405 5.58476 5.68745 5.81144 5.87113 6.00147 6.09889 6.21322 6.28174 6.29477 6.42270 6.62620 6.82010 6.83601 6.90423 7.04414 7.10854 7.35716 7.61802 7.73265 7.84302 8.03248 8.39521 8.48036 8.54832 8.81732 8.94840 10.17058 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.046262 B = 0.003914 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.102777 B = 7152.779452 C = 7372.746345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.245 1.245 7 C -0.452 4.452 8 H 0.088 0.912 9 C 0.126 3.874 10 C -0.272 4.272 11 C -0.048 4.048 12 C -0.301 4.301 13 C 0.236 3.764 14 N -0.752 5.752 15 C 0.157 3.843 16 H 0.085 0.915 17 C -0.140 4.140 18 C -0.118 4.118 19 C -0.089 4.089 20 H 0.081 0.919 21 C 0.068 3.932 22 N -0.853 5.853 23 C -0.126 4.126 24 C -0.279 4.279 25 H 0.283 0.717 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.389 0.611 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.340 0.660 37 H 0.339 0.661 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.856 -5.845 2.646 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.133 4.133 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.168 1.168 7 C -0.481 4.481 8 H 0.106 0.894 9 C 0.122 3.878 10 C -0.292 4.292 11 C -0.067 4.067 12 C -0.324 4.324 13 C 0.137 3.863 14 N -0.383 5.383 15 C 0.050 3.950 16 H 0.103 0.897 17 C -0.180 4.180 18 C -0.156 4.156 19 C -0.108 4.108 20 H 0.099 0.901 21 C -0.063 4.063 22 N -0.383 5.383 23 C -0.164 4.164 24 C -0.303 4.303 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.223 0.777 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.720 -5.937 1.800 18.774 hybrid contribution -0.095 0.794 1.267 1.498 sum 17.625 -5.144 3.067 18.615 Atomic orbital electron populations 1.69712 1.08125 1.30067 1.36016 1.26139 0.94642 1.01762 0.90722 0.86269 0.81244 0.79631 0.78653 1.19802 1.22254 1.16771 1.19451 0.93299 0.95984 1.39329 0.89437 1.17445 0.92430 0.89665 0.88239 1.20894 0.95656 1.06235 1.06464 1.20368 0.93522 0.96005 0.96838 1.19928 0.98642 1.04267 1.09559 1.17556 0.89204 0.87996 0.91547 1.44475 1.06968 1.36634 1.50182 1.21663 0.81442 0.93673 0.98247 0.89685 1.22882 0.94303 1.00179 1.00592 1.22155 0.97408 0.95438 1.00592 1.21728 0.95172 0.94504 0.99416 0.90106 1.21885 0.87497 0.99668 0.97219 1.58756 1.10633 1.10732 1.58161 1.22628 0.94283 0.97416 1.02117 1.20400 0.91418 1.08274 1.10191 0.90650 0.88593 0.89095 0.88936 0.77706 0.91638 0.91418 0.92496 0.91688 0.95462 0.91123 0.84692 0.84908 0.91167 0.91334 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.35 13.93 55.55 0.77 -21.57 16 2 C 0.09 2.31 5.40 -17.34 -0.09 2.22 16 3 Si 0.91 21.64 24.52 -169.99 -4.17 17.47 16 4 H -0.27 -6.25 6.71 56.52 0.38 -5.87 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.95 6.86 56.52 0.39 -5.56 16 7 C -0.45 -12.62 9.57 -37.74 -0.36 -12.98 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.13 3.30 5.10 -106.85 -0.55 2.76 16 10 C -0.27 -6.82 7.17 -38.83 -0.28 -7.10 16 11 C -0.05 -1.09 10.01 -39.69 -0.40 -1.48 16 12 C -0.30 -6.38 9.23 -39.09 -0.36 -6.74 16 13 C 0.24 4.99 6.64 -83.86 -0.56 4.44 16 14 N -0.75 -12.47 5.36 -50.26 -0.27 -12.74 16 15 C 0.16 2.13 2.98 -65.90 -0.20 1.93 16 16 H 0.09 1.25 6.37 -51.93 -0.33 0.92 16 17 C -0.14 -1.75 6.52 -25.04 -0.16 -1.92 16 18 C -0.12 -1.16 5.95 -25.62 -0.15 -1.31 16 19 C -0.09 -0.85 3.16 -89.50 -0.28 -1.13 16 20 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 21 C 0.07 0.58 5.91 -3.83 -0.02 0.56 16 22 N -0.85 -6.62 9.62 -10.37 -0.10 -6.72 16 23 C -0.13 -1.36 5.99 -25.07 -0.15 -1.51 16 24 C -0.28 -6.66 9.63 -38.67 -0.37 -7.03 16 25 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 26 H 0.10 2.41 4.73 -52.49 -0.25 2.16 16 27 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 28 H 0.09 1.74 6.16 -52.49 -0.32 1.42 16 29 H 0.39 5.92 8.58 -40.82 -0.35 5.57 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.51 6.89 -51.93 -0.36 0.15 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.34 2.41 7.66 -39.29 -0.30 2.10 16 37 H 0.34 2.07 9.08 -39.29 -0.36 1.71 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.71 7.73 -51.93 -0.40 0.31 16 40 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 314.04 15.07 4.73 4.73 Total: -1.00 -28.67 314.04 -9.03 -37.70 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.07 Total: 10.43 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: -3.93 Total: -29.30 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.40 Total: -41.04 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.17 Total: 17.47 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.67 -9.03 -37.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724068527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.813 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds