Wall clock time and date at job start Mon Mar 30 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86794 * 119.99989 * 2 1 4 4 H 1.48501 * 109.47144 * 275.41223 * 3 2 1 5 5 H 1.48500 * 109.47496 * 35.41359 * 3 2 1 6 6 H 1.48503 * 109.47204 * 155.41291 * 3 2 1 7 7 C 1.39930 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00335 * 341.72940 * 7 2 1 9 9 C 1.41414 * 119.99773 * 161.72737 * 7 2 1 10 10 C 1.40786 * 120.20486 * 330.21031 * 9 7 2 11 11 C 1.37647 * 119.89145 * 179.97438 * 10 9 7 12 12 C 1.38519 * 120.32613 * 359.97438 * 11 10 9 13 13 C 1.39293 * 120.42563 * 0.04283 * 12 11 10 14 14 N 1.39686 * 119.95670 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99393 * 0.02562 * 14 13 12 16 16 H 1.09000 * 110.82254 * 328.33265 * 15 14 13 17 17 C 1.54959 * 110.76743 * 91.63350 * 15 14 13 18 18 C 1.54260 * 104.16364 * 156.22005 * 17 15 14 19 19 C 1.53876 * 106.64243 * 336.44325 * 18 17 15 20 20 H 1.09006 * 110.03164 * 119.25745 * 19 18 17 21 21 C 1.52990 * 110.03456 * 240.64433 * 19 18 17 22 22 N 1.46902 * 109.47429 * 293.54082 * 21 19 18 23 23 C 1.54272 * 106.59174 * 359.97438 * 19 18 17 24 24 C 1.38323 * 120.09615 * 0.25044 * 13 12 11 25 25 H 0.96992 * 119.99988 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.05588 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.83640 * 179.97438 * 11 10 9 28 28 H 1.07999 * 119.78932 * 180.02562 * 12 11 10 29 29 H 0.96994 * 120.00292 * 179.97438 * 14 13 12 30 30 H 1.09006 * 110.47800 * 37.56373 * 17 15 14 31 31 H 1.09006 * 110.52927 * 274.89683 * 17 15 14 32 32 H 1.09006 * 110.03541 * 217.13598 * 18 17 15 33 33 H 1.08998 * 110.03508 * 95.75497 * 18 17 15 34 34 H 1.09001 * 109.47525 * 53.54406 * 21 19 18 35 35 H 1.09006 * 109.47146 * 173.54253 * 21 19 18 36 36 H 1.00906 * 110.99455 * 56.04866 * 22 21 19 37 37 H 1.00897 * 111.00303 * 179.97438 * 22 21 19 38 38 H 1.09005 * 110.48315 * 142.28713 * 23 19 18 39 39 H 1.08996 * 110.48378 * 264.79689 * 23 19 18 40 40 H 1.07999 * 120.16276 * 179.70277 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5017 2.6170 0.8113 6 1 3.5924 1.4098 0.5825 7 6 2.0079 -1.2119 0.0005 8 1 1.5088 -2.1234 0.2941 9 6 3.3686 -1.2430 -0.3834 10 6 3.8629 -0.3110 -1.3157 11 6 5.1886 -0.3468 -1.6845 12 6 6.0400 -1.2954 -1.1424 13 6 5.5651 -2.2241 -0.2192 14 7 6.4322 -3.1768 0.3209 15 6 7.8401 -3.1983 -0.0833 16 1 7.9523 -2.8638 -1.1146 17 6 8.6991 -2.3307 0.8710 18 6 10.1212 -2.9120 0.7322 19 6 9.9589 -4.3622 0.2441 20 1 10.4493 -4.4884 -0.7212 21 6 10.5585 -5.3295 1.2666 22 7 12.0139 -5.1391 1.3262 23 6 8.4432 -4.6127 0.1037 24 6 4.2347 -2.2079 0.1593 25 1 -0.4850 0.8400 0.0004 26 1 3.2031 0.4308 -1.7408 27 1 5.5668 0.3684 -2.4001 28 1 7.0787 -1.3154 -1.4375 29 1 6.1023 -3.8235 0.9641 30 1 8.3454 -2.4285 1.8975 31 1 8.6815 -1.2867 0.5583 32 1 10.6265 -2.8974 1.6980 33 1 10.6912 -2.3346 0.0043 34 1 10.1261 -5.1349 2.2481 35 1 10.3381 -6.3549 0.9694 36 1 12.2446 -4.1796 1.5368 37 1 12.4336 -5.7668 1.9954 38 1 8.2384 -5.2331 -0.7689 39 1 8.0490 -5.0817 1.0051 40 1 3.8643 -2.9305 0.8714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724068527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:22 Heat of formation + Delta-G solvation = -16.855266 kcal Electronic energy + Delta-G solvation = -18956.530229 eV Core-core repulsion = 16154.581842 eV Total energy + Delta-G solvation = -2801.948387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.36504 -39.19663 -36.47677 -35.21728 -33.95569 -32.05168 -30.32278 -29.95864 -27.51115 -26.99416 -24.46796 -22.88259 -22.68443 -21.07122 -20.36570 -19.29332 -17.83280 -17.27289 -17.07006 -16.54955 -16.35067 -16.23341 -15.21829 -15.16215 -14.55458 -14.41118 -14.26401 -13.95258 -13.85594 -13.65810 -13.35509 -13.14184 -12.86717 -12.56662 -12.37133 -12.12228 -11.98391 -11.67734 -11.58148 -11.54583 -11.34786 -11.30846 -11.03795 -10.50522 -9.58565 -9.46954 -8.87195 -8.05116 -6.49327 0.86777 1.10858 1.29608 1.44160 1.53132 2.17347 2.66542 2.70065 3.55694 3.64554 3.68536 3.74377 4.07725 4.31019 4.38541 4.39128 4.47083 4.56611 4.65276 4.66284 4.73039 4.75081 4.86816 4.94206 4.99866 5.07578 5.11004 5.15808 5.17766 5.29945 5.39472 5.48465 5.56465 5.80568 5.87935 6.01449 6.12894 6.25789 6.39788 6.61177 6.72307 6.83932 6.92664 7.12432 8.21976 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.046262 B = 0.003914 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.102777 B = 7152.779452 C = 7372.746345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.048 3.952 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.490 4.490 8 H 0.051 0.949 9 C 0.107 3.893 10 C -0.295 4.295 11 C -0.048 4.048 12 C -0.290 4.290 13 C 0.245 3.755 14 N -0.742 5.742 15 C 0.148 3.852 16 H 0.080 0.920 17 C -0.137 4.137 18 C -0.110 4.110 19 C -0.082 4.082 20 H 0.080 0.920 21 C 0.071 3.929 22 N -0.859 5.859 23 C -0.118 4.118 24 C -0.298 4.298 25 H 0.292 0.708 26 H 0.091 0.909 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.397 0.603 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.345 0.655 37 H 0.349 0.651 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.462 -5.661 2.352 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.165 4.165 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.104 3.896 10 C -0.316 4.316 11 C -0.067 4.067 12 C -0.313 4.313 13 C 0.143 3.857 14 N -0.371 5.371 15 C 0.042 3.958 16 H 0.098 0.902 17 C -0.177 4.177 18 C -0.148 4.148 19 C -0.101 4.101 20 H 0.098 0.902 21 C -0.060 4.060 22 N -0.390 5.390 23 C -0.157 4.157 24 C -0.322 4.322 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.231 0.769 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 21.363 -5.791 1.520 22.186 hybrid contribution -0.979 0.558 1.348 1.757 sum 20.383 -5.233 2.868 21.239 Atomic orbital electron populations 1.69738 1.09178 1.31313 1.37981 1.26815 0.95287 1.04261 0.90183 0.85400 0.79408 0.76337 0.79287 1.18480 1.20654 1.17936 1.19455 0.94771 0.95456 1.42323 0.93035 1.17593 0.92023 0.91015 0.88929 1.20957 0.97043 1.06488 1.07085 1.20761 0.92484 0.96595 0.96850 1.20351 0.99969 1.02894 1.08067 1.17617 0.88740 0.88459 0.90884 1.44598 1.07842 1.35285 1.49420 1.21918 0.79644 0.96057 0.98177 0.90198 1.22812 0.95734 0.99415 0.99690 1.22102 0.95708 0.95355 1.01607 1.21655 0.94095 0.94595 0.99757 0.90203 1.21812 0.87971 0.99360 0.96833 1.58738 1.10118 1.11373 1.58776 1.22567 0.94994 0.95510 1.02586 1.20513 0.92773 1.08170 1.10793 0.89736 0.89092 0.85715 0.85832 0.76883 0.92271 0.92480 0.91203 0.91013 0.95354 0.91035 0.84189 0.83820 0.90893 0.90729 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.85 13.93 21.82 0.30 -48.54 16 2 C 0.05 2.71 5.40 85.25 0.46 3.17 16 3 Si 0.97 45.16 24.52 68.60 1.68 46.84 16 4 H -0.26 -11.41 6.71 99.48 0.67 -10.74 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -12.19 6.86 99.48 0.68 -11.51 16 7 C -0.49 -28.92 9.57 23.46 0.22 -28.70 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 9 C 0.11 5.78 5.10 -21.31 -0.11 5.67 16 10 C -0.30 -14.64 7.17 22.75 0.16 -14.48 16 11 C -0.05 -2.04 10.01 22.20 0.22 -1.82 16 12 C -0.29 -11.42 9.23 22.59 0.21 -11.21 16 13 C 0.25 9.97 6.64 38.16 0.25 10.23 16 14 N -0.74 -23.04 5.36 -312.92 -1.68 -24.71 16 15 C 0.15 3.58 2.98 46.31 0.14 3.72 16 16 H 0.08 2.06 6.37 -2.39 -0.02 2.05 16 17 C -0.14 -3.03 6.52 31.69 0.21 -2.82 16 18 C -0.11 -1.78 5.95 31.32 0.19 -1.59 16 19 C -0.08 -1.29 3.16 -10.07 -0.03 -1.32 16 20 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 21 C 0.07 0.99 5.91 86.30 0.51 1.50 16 22 N -0.86 -10.71 9.62 -186.72 -1.80 -12.51 16 23 C -0.12 -2.19 5.99 31.67 0.19 -2.00 16 24 C -0.30 -14.40 9.63 22.86 0.22 -14.18 16 25 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 26 H 0.09 4.53 4.73 -2.91 -0.01 4.52 16 27 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 28 H 0.12 4.11 6.16 -2.91 -0.02 4.09 16 29 H 0.40 11.36 8.58 -92.71 -0.80 10.57 16 30 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.07 0.98 6.89 -2.38 -0.02 0.97 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.03 0.39 8.14 -2.39 -0.02 0.38 16 35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.34 3.76 7.66 -89.69 -0.69 3.07 16 37 H 0.35 3.28 9.08 -89.70 -0.81 2.46 16 38 H 0.07 1.34 8.14 -2.38 -0.02 1.33 16 39 H 0.07 1.32 7.73 -2.39 -0.02 1.30 16 40 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -63.42 314.04 0.06 -63.36 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -1.30 Total: 29.39 kcal Atomic # 6 Polarization: -56.68 SS G_CDS: 2.84 Total: -53.84 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -3.17 Total: -85.76 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.68 Total: 46.84 kcal Total: -63.42 0.06 -63.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724068527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.503 kcal (2) G-P(sol) polarization free energy of solvation -63.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds