Wall clock time and date at job start Mon Mar 30 2020 06:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 120.00172 * 2 1 4 4 H 1.48497 * 109.47261 * 270.00478 * 3 2 1 5 5 H 1.48500 * 109.47156 * 30.00374 * 3 2 1 6 6 H 1.48501 * 109.47078 * 150.00317 * 3 2 1 7 7 C 1.39930 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99750 * 197.72794 * 7 2 1 9 9 C 1.41413 * 120.00264 * 17.73634 * 7 2 1 10 10 C 1.40781 * 120.20709 * 204.33765 * 9 7 2 11 11 C 1.37645 * 119.89116 * 179.97438 * 10 9 7 12 12 C 1.38521 * 120.32622 * 359.97438 * 11 10 9 13 13 C 1.39291 * 120.42438 * 359.97438 * 12 11 10 14 14 N 1.39688 * 119.95185 * 180.02562 * 13 12 11 15 15 C 1.46501 * 119.99802 * 0.02562 * 14 13 12 16 16 H 1.08993 * 110.53918 * 36.15869 * 15 14 13 17 17 C 1.54898 * 110.48508 * 273.54216 * 15 14 13 18 18 C 1.54880 * 102.74827 * 203.37938 * 17 15 14 19 19 C 1.54271 * 104.19669 * 37.94819 * 18 17 15 20 20 H 1.08996 * 110.03412 * 95.67178 * 19 18 17 21 21 C 1.52999 * 110.03320 * 217.10422 * 19 18 17 22 22 N 1.46906 * 109.47147 * 293.54424 * 21 19 18 23 23 C 1.53873 * 106.59710 * 336.38673 * 19 18 17 24 24 C 1.38311 * 120.09810 * 0.30008 * 13 12 11 25 25 H 0.97002 * 119.99698 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.05513 * 359.97438 * 10 9 7 27 27 H 1.07996 * 119.83663 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.78694 * 180.02562 * 12 11 10 29 29 H 0.96999 * 119.99666 * 180.02562 * 14 13 12 30 30 H 1.09009 * 110.74938 * 85.06610 * 17 15 14 31 31 H 1.08997 * 110.75503 * 321.70080 * 17 15 14 32 32 H 1.09003 * 110.48854 * 156.62078 * 18 17 15 33 33 H 1.08996 * 110.49311 * 279.27157 * 18 17 15 34 34 H 1.08998 * 109.47028 * 53.53980 * 21 19 18 35 35 H 1.08999 * 109.47211 * 173.54463 * 21 19 18 36 36 H 1.00896 * 110.99901 * 179.97438 * 22 21 19 37 37 H 1.00900 * 110.99764 * 303.95723 * 22 21 19 38 38 H 1.08991 * 110.03371 * 119.28538 * 23 19 18 39 39 H 1.09004 * 110.03279 * 240.67202 * 23 19 18 40 40 H 1.07997 * 120.16441 * 179.70101 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4399 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0494 -1.2342 0.2843 9 6 1.3512 -2.4073 -0.3741 10 6 1.8272 -3.6501 0.0849 11 6 1.1827 -4.8096 -0.2824 12 6 0.0668 -4.7601 -1.1016 13 6 -0.4162 -3.5377 -1.5626 14 7 -1.5426 -3.4993 -2.3878 15 6 -2.2153 -4.7441 -2.7674 16 1 -2.1961 -5.4561 -1.9423 17 6 -1.5532 -5.3559 -4.0270 18 6 -2.6849 -6.2342 -4.6156 19 6 -3.9666 -5.4090 -4.3782 20 1 -4.2099 -4.8321 -5.2704 21 6 -5.1289 -6.3374 -4.0206 22 7 -5.4601 -7.1764 -5.1801 23 6 -3.6680 -4.4616 -3.2031 24 6 0.2212 -2.3622 -1.2091 25 1 -0.4850 0.8401 0.0004 26 1 2.6966 -3.6937 0.7241 27 1 1.5484 -5.7625 0.0706 28 1 -0.4324 -5.6753 -1.3840 29 1 -1.8793 -2.6484 -2.7095 30 1 -0.6929 -5.9667 -3.7530 31 1 -1.2652 -4.5744 -4.7301 32 1 -2.5272 -6.3955 -5.6821 33 1 -2.7416 -7.1868 -4.0891 34 1 -4.8419 -6.9727 -3.1827 35 1 -5.9982 -5.7411 -3.7435 36 1 -6.2253 -7.7992 -4.9690 37 1 -5.6672 -6.6099 -5.9890 38 1 -3.7663 -3.4250 -3.5250 39 1 -4.3517 -4.6627 -2.3783 40 1 -0.1495 -1.4142 -1.5698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724068529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:25 Heat of formation + Delta-G solvation = 1.849389 kcal Electronic energy + Delta-G solvation = -19031.968948 eV Core-core repulsion = 16230.831656 eV Total energy + Delta-G solvation = -2801.137292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.96470 -37.36158 -34.97204 -33.56594 -32.55686 -29.40912 -28.87642 -28.63994 -25.92185 -25.15213 -23.42400 -21.16556 -20.51439 -19.84819 -19.38449 -17.24556 -16.12741 -15.93190 -15.49218 -14.91003 -14.63997 -14.50036 -14.19831 -13.84416 -13.34568 -12.87455 -12.72115 -12.17040 -12.14342 -11.95695 -11.46891 -11.36022 -11.04873 -11.02281 -10.87100 -10.77295 -10.64732 -10.43414 -10.36068 -10.24844 -9.56090 -9.37727 -9.17977 -8.89559 -8.67904 -7.25480 -6.68601 -6.08990 -4.26490 2.90646 3.12294 3.16116 3.28486 3.38911 4.01057 4.21315 4.44031 4.68899 4.74603 4.80087 4.94801 5.27098 5.45830 5.54804 5.62972 5.73531 5.75844 5.84312 5.89172 5.98139 6.02853 6.24539 6.34488 6.39130 6.48359 6.55443 6.69739 6.88852 6.94928 7.17432 7.18261 7.19921 7.44241 7.50564 7.88335 8.02310 8.17365 8.23095 8.55005 8.78817 8.90094 9.06494 9.18051 10.30175 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032330 B = 0.004183 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.848941 B = 6692.943225 C = 7262.644147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.139 3.861 10 C -0.258 4.258 11 C -0.067 4.067 12 C -0.298 4.298 13 C 0.217 3.783 14 N -0.753 5.753 15 C 0.160 3.840 16 H 0.077 0.923 17 C -0.142 4.142 18 C -0.103 4.103 19 C -0.088 4.088 20 H 0.067 0.933 21 C 0.067 3.933 22 N -0.850 5.850 23 C -0.126 4.126 24 C -0.232 4.232 25 H 0.276 0.724 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.388 0.612 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.024 0.976 36 H 0.339 0.661 37 H 0.338 0.662 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 -7.268 -8.212 14.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.136 3.864 10 C -0.279 4.279 11 C -0.086 4.086 12 C -0.321 4.321 13 C 0.119 3.881 14 N -0.385 5.385 15 C 0.053 3.947 16 H 0.095 0.905 17 C -0.181 4.181 18 C -0.141 4.141 19 C -0.107 4.107 20 H 0.085 0.915 21 C -0.064 4.064 22 N -0.379 5.379 23 C -0.165 4.165 24 C -0.256 4.256 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.221 0.779 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.205 -7.573 -8.095 14.408 hybrid contribution -0.795 1.598 -0.009 1.785 sum -10.000 -5.975 -8.105 14.191 Atomic orbital electron populations 1.69875 1.07477 1.28657 1.35914 1.25868 0.94668 1.01039 0.92359 0.86386 0.80565 0.80966 0.79168 1.19439 1.20501 1.18713 1.19558 0.98020 0.91325 1.40652 0.90638 1.17321 0.90142 0.91806 0.87176 1.20853 1.04790 0.92958 1.09275 1.20286 0.95181 0.96204 0.96904 1.19911 1.04247 0.94473 1.13466 1.17653 0.86314 0.94259 0.89922 1.44519 1.31442 1.06047 1.56526 1.21448 0.89852 0.87754 0.95639 0.90533 1.23058 0.97974 0.99145 0.97950 1.22218 0.93215 0.98053 1.00619 1.21714 0.95382 0.95684 0.97910 0.91454 1.21971 0.96339 0.94694 0.93350 1.58686 1.47698 1.24462 1.07076 1.22413 0.97053 0.99429 0.97583 1.20725 1.02556 0.95068 1.07253 0.91286 0.89479 0.89725 0.89542 0.77865 0.91445 0.91602 0.92013 0.91492 0.90819 0.95819 0.84942 0.84988 0.91438 0.91508 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.93 10.95 55.55 0.61 -20.33 16 2 C 0.08 2.00 5.14 -17.34 -0.09 1.92 16 3 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.47 -12.76 9.05 -37.74 -0.34 -13.10 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 9 C 0.14 3.83 5.57 -106.85 -0.60 3.23 16 10 C -0.26 -6.65 9.79 -38.84 -0.38 -7.03 16 11 C -0.07 -1.58 10.02 -39.69 -0.40 -1.97 16 12 C -0.30 -6.87 9.23 -39.09 -0.36 -7.23 16 13 C 0.22 5.12 6.64 -83.86 -0.56 4.56 16 14 N -0.75 -14.44 5.35 -50.61 -0.27 -14.71 16 15 C 0.16 2.50 2.80 -66.26 -0.19 2.32 16 16 H 0.08 1.29 6.61 -51.93 -0.34 0.94 16 17 C -0.14 -2.06 6.58 -24.74 -0.16 -2.22 16 18 C -0.10 -1.23 6.16 -25.07 -0.15 -1.38 16 19 C -0.09 -0.94 3.10 -89.50 -0.28 -1.22 16 20 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 21 C 0.07 0.63 5.84 -3.82 -0.02 0.61 16 22 N -0.85 -7.04 9.41 -10.37 -0.10 -7.14 16 23 C -0.13 -1.58 6.18 -25.61 -0.16 -1.74 16 24 C -0.23 -6.15 8.53 -38.67 -0.33 -6.48 16 25 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 26 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 27 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.09 1.80 6.26 -52.49 -0.33 1.48 16 29 H 0.39 7.12 8.33 -40.82 -0.34 6.78 16 30 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.81 7.78 -51.93 -0.40 0.41 16 34 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 35 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.34 2.24 9.08 -39.29 -0.36 1.88 16 37 H 0.34 2.43 8.99 -39.29 -0.35 2.08 16 38 H 0.07 0.84 7.71 -51.93 -0.40 0.44 16 39 H 0.07 0.81 7.67 -51.93 -0.40 0.41 16 40 H 0.12 3.16 6.16 -52.49 -0.32 2.83 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -28.49 320.91 -10.14 -38.63 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -6.17 Total: 14.33 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: -4.01 Total: -29.74 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.24 Total: -42.18 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.49 -10.14 -38.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724068529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.483 kcal (2) G-P(sol) polarization free energy of solvation -28.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds