Wall clock time and date at job start Mon Mar 30 2020 06:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 120.00172 * 2 1 4 4 H 1.48497 * 109.47261 * 270.00478 * 3 2 1 5 5 H 1.48500 * 109.47156 * 30.00374 * 3 2 1 6 6 H 1.48501 * 109.47078 * 150.00317 * 3 2 1 7 7 C 1.39930 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99750 * 197.72794 * 7 2 1 9 9 C 1.41413 * 120.00264 * 17.73634 * 7 2 1 10 10 C 1.40781 * 120.20709 * 204.33765 * 9 7 2 11 11 C 1.37645 * 119.89116 * 179.97438 * 10 9 7 12 12 C 1.38521 * 120.32622 * 359.97438 * 11 10 9 13 13 C 1.39291 * 120.42438 * 359.97438 * 12 11 10 14 14 N 1.39688 * 119.95185 * 180.02562 * 13 12 11 15 15 C 1.46501 * 119.99802 * 0.02562 * 14 13 12 16 16 H 1.08993 * 110.53918 * 36.15869 * 15 14 13 17 17 C 1.54898 * 110.48508 * 273.54216 * 15 14 13 18 18 C 1.54880 * 102.74827 * 203.37938 * 17 15 14 19 19 C 1.54271 * 104.19669 * 37.94819 * 18 17 15 20 20 H 1.08996 * 110.03412 * 95.67178 * 19 18 17 21 21 C 1.52999 * 110.03320 * 217.10422 * 19 18 17 22 22 N 1.46906 * 109.47147 * 293.54424 * 21 19 18 23 23 C 1.53873 * 106.59710 * 336.38673 * 19 18 17 24 24 C 1.38311 * 120.09810 * 0.30008 * 13 12 11 25 25 H 0.97002 * 119.99698 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.05513 * 359.97438 * 10 9 7 27 27 H 1.07996 * 119.83663 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.78694 * 180.02562 * 12 11 10 29 29 H 0.96999 * 119.99666 * 180.02562 * 14 13 12 30 30 H 1.09009 * 110.74938 * 85.06610 * 17 15 14 31 31 H 1.08997 * 110.75503 * 321.70080 * 17 15 14 32 32 H 1.09003 * 110.48854 * 156.62078 * 18 17 15 33 33 H 1.08996 * 110.49311 * 279.27157 * 18 17 15 34 34 H 1.08998 * 109.47028 * 53.53980 * 21 19 18 35 35 H 1.08999 * 109.47211 * 173.54463 * 21 19 18 36 36 H 1.00896 * 110.99901 * 179.97438 * 22 21 19 37 37 H 1.00900 * 110.99764 * 303.95723 * 22 21 19 38 38 H 1.08991 * 110.03371 * 119.28538 * 23 19 18 39 39 H 1.09004 * 110.03279 * 240.67202 * 23 19 18 40 40 H 1.07997 * 120.16441 * 179.70101 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4399 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0494 -1.2342 0.2843 9 6 1.3512 -2.4073 -0.3741 10 6 1.8272 -3.6501 0.0849 11 6 1.1827 -4.8096 -0.2824 12 6 0.0668 -4.7601 -1.1016 13 6 -0.4162 -3.5377 -1.5626 14 7 -1.5426 -3.4993 -2.3878 15 6 -2.2153 -4.7441 -2.7674 16 1 -2.1961 -5.4561 -1.9423 17 6 -1.5532 -5.3559 -4.0270 18 6 -2.6849 -6.2342 -4.6156 19 6 -3.9666 -5.4090 -4.3782 20 1 -4.2099 -4.8321 -5.2704 21 6 -5.1289 -6.3374 -4.0206 22 7 -5.4601 -7.1764 -5.1801 23 6 -3.6680 -4.4616 -3.2031 24 6 0.2212 -2.3622 -1.2091 25 1 -0.4850 0.8401 0.0004 26 1 2.6966 -3.6937 0.7241 27 1 1.5484 -5.7625 0.0706 28 1 -0.4324 -5.6753 -1.3840 29 1 -1.8793 -2.6484 -2.7095 30 1 -0.6929 -5.9667 -3.7530 31 1 -1.2652 -4.5744 -4.7301 32 1 -2.5272 -6.3955 -5.6821 33 1 -2.7416 -7.1868 -4.0891 34 1 -4.8419 -6.9727 -3.1827 35 1 -5.9982 -5.7411 -3.7435 36 1 -6.2253 -7.7992 -4.9690 37 1 -5.6672 -6.6099 -5.9890 38 1 -3.7663 -3.4250 -3.5250 39 1 -4.3517 -4.6627 -2.3783 40 1 -0.1495 -1.4142 -1.5698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724068529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:24 Heat of formation + Delta-G solvation = -15.504308 kcal Electronic energy + Delta-G solvation = -19032.721461 eV Core-core repulsion = 16230.831656 eV Total energy + Delta-G solvation = -2801.889805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.25725 -38.99716 -36.32110 -35.21456 -33.92450 -31.34605 -30.15669 -29.89206 -27.34055 -27.09625 -24.35370 -22.94007 -22.12153 -21.19448 -20.57962 -19.10406 -17.70850 -16.99913 -16.74561 -16.47674 -16.29247 -15.62564 -15.30702 -15.06109 -14.60708 -14.47308 -14.41440 -14.00985 -13.61910 -13.21903 -13.03554 -12.84850 -12.69270 -12.43675 -12.21135 -12.06590 -11.98591 -11.77736 -11.63783 -11.47271 -11.35446 -11.23626 -11.03485 -10.42464 -9.52793 -9.24011 -8.61336 -7.87319 -6.31249 1.09335 1.34811 1.38537 1.51474 1.59305 2.23436 2.79936 2.85588 3.56060 3.67370 3.86659 3.87429 4.03542 4.30817 4.48655 4.53046 4.55418 4.64153 4.67681 4.72017 4.81429 4.91026 4.95941 5.01113 5.03571 5.20752 5.23703 5.27663 5.32498 5.37979 5.50378 5.54061 5.63986 5.98474 6.12863 6.22874 6.27603 6.29545 6.59971 6.65661 6.96105 7.06915 7.09891 7.27846 8.39153 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032330 B = 0.004183 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.848941 B = 6692.943225 C = 7262.644147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.070 0.930 9 C 0.108 3.892 10 C -0.287 4.287 11 C -0.064 4.064 12 C -0.301 4.301 13 C 0.222 3.778 14 N -0.747 5.747 15 C 0.153 3.847 16 H 0.068 0.932 17 C -0.138 4.138 18 C -0.093 4.093 19 C -0.080 4.080 20 H 0.077 0.923 21 C 0.071 3.929 22 N -0.856 5.856 23 C -0.119 4.119 24 C -0.260 4.260 25 H 0.285 0.715 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.391 0.609 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.032 0.968 36 H 0.349 0.651 37 H 0.345 0.655 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.954 -7.804 -9.186 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.535 4.535 8 H 0.089 0.911 9 C 0.106 3.894 10 C -0.307 4.307 11 C -0.082 4.082 12 C -0.324 4.324 13 C 0.121 3.879 14 N -0.378 5.378 15 C 0.047 3.953 16 H 0.086 0.914 17 C -0.178 4.178 18 C -0.131 4.131 19 C -0.099 4.099 20 H 0.095 0.905 21 C -0.059 4.059 22 N -0.387 5.387 23 C -0.158 4.158 24 C -0.285 4.285 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.135 0.865 28 H 0.129 0.871 29 H 0.224 0.776 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.494 -8.140 -9.094 16.096 hybrid contribution -0.481 1.646 0.258 1.735 sum -10.975 -6.494 -8.836 15.515 Atomic orbital electron populations 1.69929 1.08872 1.30054 1.35947 1.26712 0.95503 1.04267 0.91292 0.85239 0.79087 0.76135 0.79397 1.18803 1.19186 1.18411 1.19803 0.98161 0.92740 1.42758 0.91132 1.17716 0.91037 0.92803 0.87889 1.21012 1.05757 0.93396 1.10563 1.20648 0.94718 0.96859 0.95997 1.20225 1.04102 0.95153 1.12875 1.17763 0.86927 0.93640 0.89554 1.44649 1.30180 1.07716 1.55243 1.21689 0.91748 0.86035 0.95837 0.91392 1.22973 0.98442 0.99100 0.97244 1.22139 0.92511 0.97571 1.00852 1.21648 0.95392 0.95451 0.97397 0.90485 1.21856 0.95963 0.94526 0.93594 1.58647 1.48497 1.24584 1.06947 1.22358 0.94723 1.00088 0.98588 1.20657 1.03560 0.95471 1.08779 0.90489 0.89291 0.86510 0.87092 0.77552 0.92763 0.92393 0.91203 0.91430 0.91402 0.94972 0.83774 0.84172 0.91287 0.90789 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.37 10.95 21.82 0.24 -44.13 16 2 C 0.04 1.94 5.14 85.25 0.44 2.38 16 3 Si 0.98 39.72 29.59 68.60 2.03 41.75 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.50 -28.73 9.05 23.46 0.21 -28.52 16 8 H 0.07 3.91 7.91 -2.91 -0.02 3.88 16 9 C 0.11 6.22 5.57 -21.31 -0.12 6.10 16 10 C -0.29 -15.11 9.79 22.75 0.22 -14.89 16 11 C -0.06 -2.97 10.02 22.20 0.22 -2.74 16 12 C -0.30 -13.66 9.23 22.59 0.21 -13.45 16 13 C 0.22 10.56 6.64 38.16 0.25 10.81 16 14 N -0.75 -28.43 5.35 -314.04 -1.68 -30.11 16 15 C 0.15 4.57 2.80 46.07 0.13 4.70 16 16 H 0.07 2.18 6.61 -2.39 -0.02 2.16 16 17 C -0.14 -3.83 6.58 31.88 0.21 -3.62 16 18 C -0.09 -1.99 6.16 31.67 0.20 -1.80 16 19 C -0.08 -1.50 3.10 -10.07 -0.03 -1.53 16 20 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 21 C 0.07 1.14 5.84 86.30 0.50 1.65 16 22 N -0.86 -11.73 9.41 -186.71 -1.76 -13.49 16 23 C -0.12 -2.73 6.18 31.32 0.19 -2.54 16 24 C -0.26 -14.25 8.53 22.86 0.20 -14.05 16 25 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 26 H 0.09 4.49 8.06 -2.91 -0.02 4.46 16 27 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 28 H 0.11 4.44 6.26 -2.91 -0.02 4.42 16 29 H 0.39 14.35 8.33 -92.71 -0.77 13.58 16 30 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.47 7.78 -2.39 -0.02 1.45 16 34 H 0.07 1.18 8.04 -2.39 -0.02 1.17 16 35 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.35 3.67 9.08 -89.70 -0.81 2.85 16 37 H 0.35 3.95 8.99 -89.69 -0.81 3.14 16 38 H 0.07 1.59 7.71 -2.39 -0.02 1.57 16 39 H 0.07 1.61 7.67 -2.38 -0.02 1.60 16 40 H 0.10 5.65 6.16 -2.91 -0.02 5.63 16 Total: -1.00 -62.51 320.91 0.33 -62.18 By element: Atomic # 1 Polarization: 42.65 SS G_CDS: -1.34 Total: 41.32 kcal Atomic # 6 Polarization: -60.35 SS G_CDS: 2.83 Total: -57.51 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -3.20 Total: -87.73 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -62.51 0.33 -62.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724068529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.672 kcal (2) G-P(sol) polarization free energy of solvation -62.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds