Wall clock time and date at job start Mon Mar 30 2020 06:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.01643 * 2 1 4 4 N 1.46502 * 109.47052 * 58.61192 * 3 2 1 5 5 C 1.38820 * 120.00010 * 179.97438 * 4 3 2 6 6 C 1.39803 * 119.58295 * 359.97438 * 5 4 3 7 7 C 1.38598 * 119.48881 * 179.97438 * 6 5 4 8 8 C 1.38393 * 118.67941 * 0.25920 * 7 6 5 9 9 C 1.40547 * 119.14706 * 359.47912 * 8 7 6 10 10 C 1.41324 * 119.78258 * 180.25227 * 9 8 7 11 11 H 1.08001 * 119.99729 * 0.27110 * 10 9 8 12 12 C 1.40017 * 120.00293 * 180.27361 * 10 9 8 13 13 N 1.30750 * 120.00116 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47382 * 89.99712 * 14 12 10 16 16 H 1.48501 * 109.47313 * 210.00151 * 14 12 10 17 17 H 1.48508 * 109.47126 * 329.99826 * 14 12 10 18 18 N 1.31950 * 119.58604 * 179.97438 * 5 4 3 19 19 C 1.54264 * 110.07150 * 121.41949 * 2 1 3 20 20 C 1.54891 * 104.19564 * 95.69707 * 19 2 1 21 21 C 1.54894 * 102.74968 * 37.94136 * 20 19 2 22 22 C 1.53883 * 110.03099 * 238.61082 * 2 1 3 23 23 H 1.09002 * 109.46983 * 60.70110 * 1 2 3 24 24 H 1.08993 * 109.47173 * 180.69724 * 1 2 3 25 25 H 1.09003 * 109.47370 * 300.70219 * 1 2 3 26 26 H 1.09003 * 109.47253 * 298.60701 * 3 2 1 27 27 H 1.09003 * 109.46690 * 178.61011 * 3 2 1 28 28 H 0.96996 * 119.99993 * 359.97438 * 4 3 2 29 29 H 1.08000 * 120.25539 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.65587 * 179.97438 * 7 6 5 31 31 H 1.07994 * 120.42073 * 179.74187 * 8 7 6 32 32 H 0.96995 * 120.00538 * 180.02562 * 13 12 10 33 33 H 1.08999 * 110.48374 * 214.37424 * 19 2 1 34 34 H 1.08995 * 110.48785 * 337.01906 * 19 2 1 35 35 H 1.09002 * 110.75645 * 279.62774 * 20 19 2 36 36 H 1.08996 * 110.75772 * 156.25566 * 20 19 2 37 37 H 1.08998 * 110.48428 * 203.38246 * 21 20 19 38 38 H 1.09000 * 110.59999 * 80.79106 * 21 20 19 39 39 H 1.08997 * 110.03080 * 359.95008 * 22 2 1 40 40 H 1.08999 * 110.02988 * 121.33586 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 7 1.5449 2.1427 1.1791 5 6 1.8884 3.4701 1.3960 6 6 2.7208 4.1255 0.4838 7 6 3.0620 5.4510 0.7019 8 6 2.5685 6.0873 1.8274 9 6 1.7315 5.3760 2.7043 10 6 1.2156 6.0142 3.8548 11 1 1.4614 7.0466 4.0556 12 6 0.3860 5.3083 4.7345 13 7 0.0880 4.0586 4.4912 14 14 -0.2953 6.1517 6.2556 15 1 -1.5982 6.7849 5.9289 16 1 -0.4889 5.1483 7.3331 17 1 0.6597 7.1924 6.7141 18 7 1.4251 4.0974 2.4604 19 6 2.0594 -0.7553 1.2365 20 6 2.3298 -2.1898 0.7184 21 6 2.8885 -1.9396 -0.7045 22 6 2.0571 -0.7530 -1.2342 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3633 -1.0275 0.0125 25 1 -0.3634 0.5247 0.8836 26 1 1.7157 1.9474 -0.9022 27 1 3.1434 1.4272 0.0249 28 1 0.9681 1.6820 1.8083 29 1 3.0950 3.6030 -0.3841 30 1 3.7041 5.9754 0.0097 31 1 2.8198 7.1184 2.0271 32 1 -0.4870 3.5696 5.1003 33 1 2.9819 -0.2994 1.5959 34 1 1.3075 -0.7701 2.0254 35 1 1.4052 -2.7654 0.6746 36 1 3.0698 -2.6923 1.3411 37 1 2.7414 -2.8187 -1.3320 38 1 3.9451 -1.6757 -0.6607 39 1 1.2229 -1.1192 -1.8325 40 1 2.6853 -0.0940 -1.8334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771754236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:35 Heat of formation + Delta-G solvation = 14.872091 kcal Electronic energy + Delta-G solvation = -19409.967481 eV Core-core repulsion = 16609.394896 eV Total energy + Delta-G solvation = -2800.572585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.27494 -37.94745 -34.72693 -33.21928 -31.22311 -30.23974 -28.79310 -28.51294 -26.10742 -25.28796 -23.80214 -21.44858 -20.78263 -20.20621 -18.53656 -17.28481 -16.37123 -15.63925 -15.00206 -14.61487 -14.55806 -14.01666 -13.87535 -13.64320 -13.16429 -13.10260 -12.57922 -12.40312 -12.17123 -11.80610 -11.56093 -11.15927 -11.12689 -10.99448 -10.94751 -10.73239 -10.62887 -10.49353 -10.43384 -10.36923 -10.23280 -9.86304 -9.42451 -8.80966 -7.85110 -7.45122 -6.42557 -6.27918 -4.42636 2.91787 3.13489 3.16903 3.29441 3.34848 4.01740 4.24900 4.61672 4.65797 4.78308 4.89295 5.28603 5.37551 5.41504 5.44438 5.56385 5.67308 5.84289 5.86799 5.92885 5.98676 6.06085 6.10062 6.10963 6.20348 6.22773 6.31036 6.36374 6.43946 6.52683 6.64816 6.92391 6.95022 7.01555 7.30393 7.66109 7.87584 7.98228 8.22561 8.43935 8.76662 8.86040 9.18763 10.30310 10.45873 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024651 B = 0.005063 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.575498 B = 5528.678469 C = 6333.183714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C 0.155 3.845 4 N -0.735 5.735 5 C 0.412 3.588 6 C -0.367 4.367 7 C -0.032 4.032 8 C -0.318 4.318 9 C 0.293 3.707 10 C -0.436 4.436 11 H 0.082 0.918 12 C 0.072 3.928 13 N -0.717 5.717 14 Si 0.904 3.096 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.262 1.262 18 N -0.532 5.532 19 C -0.114 4.114 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.113 4.113 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.395 0.605 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.269 0.731 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -10.829 -6.687 12.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.075 4.075 3 C 0.029 3.971 4 N -0.373 5.373 5 C 0.171 3.829 6 C -0.393 4.393 7 C -0.057 4.057 8 C -0.341 4.341 9 C 0.166 3.834 10 C -0.468 4.468 11 H 0.100 0.900 12 C -0.153 4.153 13 N -0.339 5.339 14 Si 0.728 3.272 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.186 1.186 18 N -0.254 5.254 19 C -0.152 4.152 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.151 4.151 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.230 0.770 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.817 -11.451 -6.197 13.046 hybrid contribution 0.060 0.688 0.227 0.727 sum 0.877 -10.764 -5.970 12.339 Atomic orbital electron populations 1.21880 0.94053 1.01086 1.02394 1.21402 0.96030 0.94661 0.95411 1.21170 0.97340 0.89820 0.88782 1.44172 1.56646 1.09626 1.26813 1.18550 0.89137 0.84815 0.90351 1.20614 1.16096 0.97314 1.05300 1.20591 0.95930 0.93726 0.95427 1.21519 1.11513 1.00418 1.00674 1.18197 0.87379 0.86751 0.91099 1.19570 1.24698 0.98384 1.04173 0.89974 1.26034 0.95586 0.94660 0.98990 1.70158 1.23342 1.08075 1.32297 0.86397 0.79883 0.79952 0.80933 1.19541 1.20287 1.18624 1.68221 1.28882 1.10227 1.18038 1.22464 1.01443 0.94495 0.96771 1.22488 1.00438 0.97127 0.96110 1.22343 0.99570 0.97762 0.96432 1.22201 0.99431 0.96674 0.96777 0.92733 0.92939 0.92000 0.93388 0.93266 0.76991 0.89312 0.89056 0.88807 0.92035 0.91145 0.91468 0.91786 0.91901 0.92081 0.91730 0.91637 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.97 37.16 0.30 -1.44 16 2 C -0.07 -0.95 0.66 -153.39 -0.10 -1.06 16 3 C 0.15 2.49 3.42 -4.04 -0.01 2.48 16 4 N -0.74 -14.96 5.22 -60.39 -0.32 -15.27 16 5 C 0.41 10.28 7.65 -155.33 -1.19 9.09 16 6 C -0.37 -8.73 9.34 -38.86 -0.36 -9.09 16 7 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 8 C -0.32 -8.26 9.83 -38.65 -0.38 -8.64 16 9 C 0.29 8.34 6.55 -85.00 -0.56 7.78 16 10 C -0.44 -12.05 9.14 -37.74 -0.34 -12.39 16 11 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 12 C 0.07 1.88 5.50 -17.35 -0.10 1.78 16 13 N -0.72 -19.33 11.46 55.55 0.64 -18.69 16 14 Si 0.90 19.01 29.56 -169.99 -5.02 13.98 16 15 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 16 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 18 N -0.53 -14.98 7.89 -10.33 -0.08 -15.07 16 19 C -0.11 -1.45 5.37 -25.07 -0.13 -1.58 16 20 C -0.12 -1.29 6.91 -24.73 -0.17 -1.46 16 21 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 22 C -0.11 -1.21 6.11 -25.61 -0.16 -1.36 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.89 6.80 -51.93 -0.35 0.54 16 26 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 27 H 0.05 0.81 7.89 -51.93 -0.41 0.40 16 28 H 0.39 8.06 7.08 -40.82 -0.29 7.78 16 29 H 0.09 1.89 6.68 -52.49 -0.35 1.54 16 30 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.09 2.27 8.06 -52.49 -0.42 1.84 16 32 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 33 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 34 H 0.07 0.88 7.84 -51.93 -0.41 0.48 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 40 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -29.51 319.36 -10.11 -39.62 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.35 Total: 9.07 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -3.78 Total: -18.45 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.24 Total: -49.03 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.51 -10.11 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771754236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.488 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds