Wall clock time and date at job start Mon Mar 30 2020 06:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.01643 * 2 1 4 4 N 1.46502 * 109.47052 * 58.61192 * 3 2 1 5 5 C 1.38820 * 120.00010 * 179.97438 * 4 3 2 6 6 C 1.39803 * 119.58295 * 359.97438 * 5 4 3 7 7 C 1.38598 * 119.48881 * 179.97438 * 6 5 4 8 8 C 1.38393 * 118.67941 * 0.25920 * 7 6 5 9 9 C 1.40547 * 119.14706 * 359.47912 * 8 7 6 10 10 C 1.41324 * 119.78258 * 180.25227 * 9 8 7 11 11 H 1.08001 * 119.99729 * 0.27110 * 10 9 8 12 12 C 1.40017 * 120.00293 * 180.27361 * 10 9 8 13 13 N 1.30750 * 120.00116 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47382 * 89.99712 * 14 12 10 16 16 H 1.48501 * 109.47313 * 210.00151 * 14 12 10 17 17 H 1.48508 * 109.47126 * 329.99826 * 14 12 10 18 18 N 1.31950 * 119.58604 * 179.97438 * 5 4 3 19 19 C 1.54264 * 110.07150 * 121.41949 * 2 1 3 20 20 C 1.54891 * 104.19564 * 95.69707 * 19 2 1 21 21 C 1.54894 * 102.74968 * 37.94136 * 20 19 2 22 22 C 1.53883 * 110.03099 * 238.61082 * 2 1 3 23 23 H 1.09002 * 109.46983 * 60.70110 * 1 2 3 24 24 H 1.08993 * 109.47173 * 180.69724 * 1 2 3 25 25 H 1.09003 * 109.47370 * 300.70219 * 1 2 3 26 26 H 1.09003 * 109.47253 * 298.60701 * 3 2 1 27 27 H 1.09003 * 109.46690 * 178.61011 * 3 2 1 28 28 H 0.96996 * 119.99993 * 359.97438 * 4 3 2 29 29 H 1.08000 * 120.25539 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.65587 * 179.97438 * 7 6 5 31 31 H 1.07994 * 120.42073 * 179.74187 * 8 7 6 32 32 H 0.96995 * 120.00538 * 180.02562 * 13 12 10 33 33 H 1.08999 * 110.48374 * 214.37424 * 19 2 1 34 34 H 1.08995 * 110.48785 * 337.01906 * 19 2 1 35 35 H 1.09002 * 110.75645 * 279.62774 * 20 19 2 36 36 H 1.08996 * 110.75772 * 156.25566 * 20 19 2 37 37 H 1.08998 * 110.48428 * 203.38246 * 21 20 19 38 38 H 1.09000 * 110.59999 * 80.79106 * 21 20 19 39 39 H 1.08997 * 110.03080 * 359.95008 * 22 2 1 40 40 H 1.08999 * 110.02988 * 121.33586 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 7 1.5449 2.1427 1.1791 5 6 1.8884 3.4701 1.3960 6 6 2.7208 4.1255 0.4838 7 6 3.0620 5.4510 0.7019 8 6 2.5685 6.0873 1.8274 9 6 1.7315 5.3760 2.7043 10 6 1.2156 6.0142 3.8548 11 1 1.4614 7.0466 4.0556 12 6 0.3860 5.3083 4.7345 13 7 0.0880 4.0586 4.4912 14 14 -0.2953 6.1517 6.2556 15 1 -1.5982 6.7849 5.9289 16 1 -0.4889 5.1483 7.3331 17 1 0.6597 7.1924 6.7141 18 7 1.4251 4.0974 2.4604 19 6 2.0594 -0.7553 1.2365 20 6 2.3298 -2.1898 0.7184 21 6 2.8885 -1.9396 -0.7045 22 6 2.0571 -0.7530 -1.2342 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3633 -1.0275 0.0125 25 1 -0.3634 0.5247 0.8836 26 1 1.7157 1.9474 -0.9022 27 1 3.1434 1.4272 0.0249 28 1 0.9681 1.6820 1.8083 29 1 3.0950 3.6030 -0.3841 30 1 3.7041 5.9754 0.0097 31 1 2.8198 7.1184 2.0271 32 1 -0.4870 3.5696 5.1003 33 1 2.9819 -0.2994 1.5959 34 1 1.3075 -0.7701 2.0254 35 1 1.4052 -2.7654 0.6746 36 1 3.0698 -2.6923 1.3411 37 1 2.7414 -2.8187 -1.3320 38 1 3.9451 -1.6757 -0.6607 39 1 1.2229 -1.1192 -1.8325 40 1 2.6853 -0.0940 -1.8334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771754236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:35 Heat of formation + Delta-G solvation = -0.324560 kcal Electronic energy + Delta-G solvation = -19410.626457 eV Core-core repulsion = 16609.394896 eV Total energy + Delta-G solvation = -2801.231561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.53612 -39.65016 -36.34630 -35.04851 -32.61078 -32.08652 -30.31222 -29.63266 -27.39769 -27.21083 -24.99256 -23.35031 -22.28273 -21.41971 -19.70768 -19.17403 -18.03667 -16.91189 -16.50280 -16.32796 -15.88316 -15.71368 -15.25289 -14.88511 -14.70947 -14.45364 -14.08801 -13.89615 -13.52741 -13.28885 -12.94476 -12.73069 -12.67029 -12.59709 -12.22593 -11.95750 -11.90969 -11.76531 -11.59692 -11.49504 -11.41152 -11.32780 -11.22467 -10.63090 -9.82754 -9.43746 -8.26250 -8.22247 -6.47858 1.06761 1.35097 1.41238 1.54518 1.58994 2.25280 2.70534 2.93189 3.62793 3.67797 3.77767 4.06057 4.33075 4.35126 4.40349 4.44041 4.49549 4.62283 4.68644 4.79092 4.82315 4.86457 4.95532 4.99796 5.00805 5.01615 5.10827 5.12224 5.15953 5.26056 5.27850 5.37616 5.45504 5.50767 5.52361 5.72592 5.96921 6.08510 6.23475 6.58068 6.84984 6.96802 7.24165 8.35599 8.52115 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024651 B = 0.005063 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.575498 B = 5528.678469 C = 6333.183714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.068 4.068 3 C 0.153 3.847 4 N -0.728 5.728 5 C 0.394 3.606 6 C -0.369 4.369 7 C -0.030 4.030 8 C -0.345 4.345 9 C 0.259 3.741 10 C -0.473 4.473 11 H 0.086 0.914 12 C 0.026 3.974 13 N -0.753 5.753 14 Si 0.986 3.014 15 H -0.263 1.263 16 H -0.268 1.268 17 H -0.257 1.257 18 N -0.566 5.566 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.109 4.109 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.392 0.608 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.276 0.724 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 -11.933 -7.490 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.069 4.069 3 C 0.029 3.971 4 N -0.363 5.363 5 C 0.153 3.847 6 C -0.395 4.395 7 C -0.054 4.054 8 C -0.368 4.368 9 C 0.132 3.868 10 C -0.505 4.505 11 H 0.104 0.896 12 C -0.195 4.195 13 N -0.375 5.375 14 Si 0.806 3.194 15 H -0.188 1.188 16 H -0.193 1.193 17 H -0.180 1.180 18 N -0.288 5.288 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.147 4.147 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.226 0.774 29 H 0.133 0.867 30 H 0.146 0.854 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.890 -12.586 -7.041 14.449 hybrid contribution 0.088 0.968 0.374 1.041 sum 0.978 -11.619 -6.667 13.431 Atomic orbital electron populations 1.21849 0.93901 1.02062 1.01263 1.21383 0.96050 0.92636 0.96814 1.21403 0.97240 0.91536 0.86963 1.44346 1.55982 1.08239 1.27774 1.19020 0.89243 0.86389 0.90082 1.20948 1.15328 0.97555 1.05678 1.21001 0.95429 0.93858 0.95113 1.21682 1.12423 1.01057 1.01660 1.18691 0.88407 0.87527 0.92223 1.19941 1.26284 0.99000 1.05245 0.89587 1.26956 0.95273 0.95216 1.02069 1.70256 1.23884 1.09590 1.33762 0.85163 0.79056 0.78798 0.76344 1.18803 1.19280 1.18022 1.68201 1.30298 1.10637 1.19712 1.22439 1.00109 0.96336 0.96544 1.22473 1.01242 0.95332 0.96545 1.22343 0.99245 0.98054 0.96081 1.22197 1.00113 0.96796 0.95635 0.92574 0.90871 0.94404 0.93286 0.93390 0.77356 0.86687 0.85363 0.87989 0.91394 0.93108 0.92566 0.90712 0.91273 0.90056 0.91820 0.90179 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 7.97 71.98 0.57 -2.67 16 2 C -0.07 -1.67 0.66 -51.45 -0.03 -1.70 16 3 C 0.15 4.83 3.42 86.38 0.30 5.12 16 4 N -0.73 -30.10 5.22 -344.97 -1.80 -31.90 16 5 C 0.39 20.00 7.65 133.42 1.02 21.02 16 6 C -0.37 -17.34 9.34 22.73 0.21 -17.13 16 7 C -0.03 -1.40 10.15 22.39 0.23 -1.17 16 8 C -0.35 -18.23 9.83 22.87 0.22 -18.01 16 9 C 0.26 15.23 6.55 40.18 0.26 15.49 16 10 C -0.47 -26.95 9.14 23.46 0.21 -26.73 16 11 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 12 C 0.03 1.40 5.50 85.29 0.47 1.87 16 13 N -0.75 -41.72 11.46 21.84 0.25 -41.47 16 14 Si 0.99 39.44 29.56 68.60 2.03 41.47 16 15 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 16 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 17 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 18 N -0.57 -32.92 7.89 -186.59 -1.47 -34.39 16 19 C -0.12 -2.89 5.37 31.67 0.17 -2.72 16 20 C -0.12 -2.19 6.91 31.89 0.22 -1.97 16 21 C -0.12 -1.98 6.83 31.67 0.22 -1.77 16 22 C -0.11 -2.05 6.11 31.32 0.19 -1.86 16 23 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.09 6.80 -2.39 -0.02 1.08 16 26 H 0.05 1.55 7.92 -2.39 -0.02 1.53 16 27 H 0.05 1.54 7.89 -2.39 -0.02 1.52 16 28 H 0.39 16.57 7.08 -92.71 -0.66 15.92 16 29 H 0.12 4.69 6.68 -2.91 -0.02 4.67 16 30 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 31 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 32 H 0.28 13.79 8.29 -92.71 -0.77 13.02 16 33 H 0.05 1.44 7.84 -2.39 -0.02 1.42 16 34 H 0.06 1.49 7.84 -2.39 -0.02 1.47 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.30 7.67 -2.39 -0.02 1.28 16 40 H 0.07 1.27 7.67 -2.39 -0.02 1.25 16 Total: -1.00 -65.36 319.36 3.63 -61.73 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: 0.36 Total: 36.80 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 4.26 Total: -32.23 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -3.02 Total: -107.77 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -65.36 3.63 -61.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771754236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.403 kcal (2) G-P(sol) polarization free energy of solvation -65.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds