Wall clock time and date at job start Mon Mar 30 2020 06:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29742 * 120.00089 * 2 1 4 4 N 1.40105 * 119.99778 * 0.02562 * 3 2 1 5 5 C 1.46497 * 119.99773 * 180.27389 * 4 3 2 6 6 H 1.09001 * 109.47576 * 29.72155 * 5 4 3 7 7 C 1.53002 * 109.46918 * 269.72391 * 5 4 3 8 8 C 1.50697 * 109.47346 * 149.72687 * 5 4 3 9 9 H 1.08002 * 119.99820 * 359.97438 * 8 5 4 10 10 C 1.37875 * 120.00147 * 180.02562 * 8 5 4 11 11 N 1.31515 * 120.00042 * 359.97438 * 10 8 5 12 12 Si 1.86802 * 119.99634 * 179.97438 * 10 8 5 13 13 H 1.48497 * 109.47228 * 60.00226 * 12 10 8 14 14 H 1.48501 * 109.46827 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47225 * 299.99733 * 12 10 8 16 16 C 1.47495 * 120.00165 * 180.02562 * 2 1 3 17 17 C 1.39701 * 120.15414 * 114.37266 * 16 2 1 18 18 C 1.37913 * 119.84023 * 179.97438 * 17 16 2 19 19 C 1.50701 * 119.92360 * 180.02562 * 18 17 16 20 20 C 1.38394 * 120.15729 * 0.02562 * 18 17 16 21 21 C 1.38345 * 120.31270 * 359.95452 * 20 18 17 22 22 C 1.37951 * 120.15998 * 359.79114 * 21 20 18 23 23 C 1.50697 * 120.08485 * 180.22990 * 22 21 20 24 24 H 1.09000 * 109.47200 * 89.99993 * 1 2 3 25 25 H 1.09004 * 109.46822 * 209.99609 * 1 2 3 26 26 H 1.08998 * 109.47427 * 329.99525 * 1 2 3 27 27 H 0.96995 * 119.99637 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47038 * 299.99738 * 7 5 4 29 29 H 1.08999 * 109.47441 * 59.99896 * 7 5 4 30 30 H 1.09002 * 109.47295 * 180.02562 * 7 5 4 31 31 H 0.96996 * 119.99459 * 180.02562 * 11 10 8 32 32 H 1.07998 * 120.07971 * 359.95451 * 17 16 2 33 33 H 1.08996 * 109.47703 * 89.99022 * 19 18 17 34 34 H 1.08998 * 109.47219 * 209.99829 * 19 18 17 35 35 H 1.09010 * 109.46968 * 329.99523 * 19 18 17 36 36 H 1.08002 * 119.83899 * 179.97438 * 20 18 17 37 37 H 1.08009 * 119.91648 * 180.02562 * 21 20 18 38 38 H 1.09004 * 109.47100 * 265.05526 * 23 22 21 39 39 H 1.08998 * 109.46942 * 25.04725 * 23 22 21 40 40 H 1.08998 * 109.47250 * 145.05113 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1557 1.1236 0.0000 4 7 1.4552 2.3369 0.0005 5 6 2.1877 3.6056 -0.0055 6 1 3.1399 3.4730 -0.5190 7 6 2.4431 4.0538 1.4349 8 6 1.3730 4.6526 -0.7204 9 1 0.4064 4.3983 -1.1296 10 6 1.8620 5.9349 -0.8528 11 7 3.0392 6.2445 -0.3549 12 14 0.8524 7.2325 -1.7396 13 1 -0.4449 7.4138 -1.0400 14 1 1.5948 8.5186 -1.7456 15 1 0.6044 6.7970 -3.1374 16 6 2.2445 -1.2773 -0.0006 17 6 3.0271 -1.6353 -1.1010 18 6 3.7144 -2.8309 -1.0945 19 6 4.5596 -3.2187 -2.2803 20 6 3.6298 -3.6755 -0.0014 21 6 2.8570 -3.3272 1.0920 22 6 2.1683 -2.1320 1.1014 23 6 1.3311 -1.7519 2.2954 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 0.4852 2.3368 0.0005 28 1 1.4909 4.1865 1.9484 29 1 3.0324 3.2966 1.9520 30 1 2.9878 4.9980 1.4304 31 1 3.3830 7.1467 -0.4478 32 1 3.0934 -0.9775 -1.9550 33 1 5.5737 -2.8439 -2.1419 34 1 4.5827 -4.3047 -2.3705 35 1 4.1337 -2.7879 -3.1866 36 1 4.1698 -4.6108 -0.0019 37 1 2.7958 -3.9911 1.9418 38 1 0.2964 -2.0481 2.1228 39 1 1.7112 -2.2595 3.1820 40 1 1.3802 -0.6734 2.4451 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771879645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:22 Heat of formation + Delta-G solvation = 31.389002 kcal Electronic energy + Delta-G solvation = -18874.254533 eV Core-core repulsion = 16074.398175 eV Total energy + Delta-G solvation = -2799.856358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.52061 -38.35515 -36.28705 -34.72326 -33.54454 -31.68024 -30.19259 -29.76216 -28.22751 -27.26145 -25.73317 -24.11188 -22.54378 -21.70422 -20.13927 -18.58977 -17.31446 -16.91242 -16.60373 -16.40737 -15.92488 -15.28414 -14.88376 -14.67763 -14.51561 -14.36913 -14.07551 -13.81581 -13.67074 -13.36223 -13.17282 -13.07460 -12.89404 -12.73245 -12.70763 -12.34731 -12.32534 -12.16388 -12.01200 -11.83832 -11.74880 -11.14516 -10.84074 -10.57474 -9.69186 -9.27267 -8.51995 -8.17981 -6.35842 0.32740 0.52545 1.41698 1.43770 1.47804 1.51998 2.23277 2.48707 2.88924 3.10303 3.73052 3.99054 4.02985 4.18977 4.29783 4.40212 4.47280 4.54427 4.61221 4.72855 4.76907 4.84516 4.87216 4.90774 4.94364 4.95596 5.09035 5.11835 5.16544 5.23434 5.35691 5.42492 5.53074 5.58427 5.72250 5.76664 5.82367 5.88685 6.17582 6.19227 6.43006 6.84816 7.35982 7.82894 8.86729 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.004168 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.809939 B = 6717.022828 C = 7094.633644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.052 3.948 3 N -0.248 5.248 4 N -0.643 5.643 5 C 0.308 3.692 6 H -0.004 1.004 7 C -0.134 4.134 8 C -0.548 4.548 9 H 0.060 0.940 10 C 0.019 3.981 11 N -0.915 5.915 12 Si 0.971 3.029 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.273 1.273 16 C -0.030 4.030 17 C -0.115 4.115 18 C -0.101 4.101 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.085 4.085 23 C -0.110 4.110 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.373 0.627 28 H 0.030 0.970 29 H 0.014 0.986 30 H 0.068 0.932 31 H 0.267 0.733 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.379 -20.190 1.559 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.140 4.140 3 N -0.058 5.058 4 N -0.382 5.382 5 C 0.204 3.796 6 H 0.014 0.986 7 C -0.193 4.193 8 C -0.587 4.587 9 H 0.078 0.922 10 C -0.181 4.181 11 N -0.553 5.553 12 Si 0.796 3.204 13 H -0.192 1.192 14 H -0.205 1.205 15 H -0.198 1.198 16 C -0.032 4.032 17 C -0.135 4.135 18 C -0.101 4.101 19 C -0.168 4.168 20 C -0.135 4.135 21 C -0.135 4.135 22 C -0.086 4.086 23 C -0.167 4.167 24 H 0.092 0.908 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.212 0.788 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.224 -19.406 1.580 19.509 hybrid contribution -1.378 1.079 -0.514 1.824 sum -2.602 -18.327 1.066 18.542 Atomic orbital electron populations 1.21082 0.91321 1.03520 1.02985 1.22920 0.94361 0.90700 1.06040 1.74273 1.29008 0.93305 1.09203 1.48482 1.05789 1.00014 1.83896 1.18073 0.91036 0.78069 0.92413 0.98634 1.22003 0.98962 1.00587 0.97772 1.21483 1.04730 0.95351 1.37178 0.92174 1.25723 0.96142 1.00232 0.96010 1.70019 1.18816 1.20889 1.45576 0.85418 0.78629 0.77571 0.78829 1.19172 1.20549 1.19825 1.18234 0.98085 0.91739 0.95191 1.21211 0.97390 0.96940 0.97926 1.20102 0.98265 0.93983 0.97732 1.20813 0.98623 1.02903 0.94421 1.21404 0.99119 1.00259 0.92703 1.21243 0.96918 0.95772 0.99544 1.20183 0.99032 0.94595 0.94805 1.20810 0.99677 1.01037 0.95136 0.90824 0.88624 0.92401 0.78833 0.95080 0.96699 0.91291 0.92388 0.87732 0.90965 0.89430 0.91842 0.83192 0.83065 0.89589 0.89749 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.23 71.24 0.66 -3.09 16 2 C 0.05 1.86 5.32 45.31 0.24 2.10 16 3 N -0.25 -11.03 11.48 -42.82 -0.49 -11.52 16 4 N -0.64 -30.45 5.95 -172.53 -1.03 -31.47 16 5 C 0.31 16.84 3.23 44.25 0.14 16.98 16 6 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 7 C -0.13 -7.01 9.29 71.98 0.67 -6.34 16 8 C -0.55 -30.68 8.74 25.60 0.22 -30.46 16 9 H 0.06 3.25 7.79 -2.91 -0.02 3.23 16 10 C 0.02 1.06 5.30 84.65 0.45 1.51 16 11 N -0.91 -52.90 11.32 21.45 0.24 -52.66 16 12 Si 0.97 43.19 29.54 68.60 2.03 45.21 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 16 C -0.03 -0.95 5.53 -20.14 -0.11 -1.06 16 17 C -0.12 -3.48 9.44 22.55 0.21 -3.27 16 18 C -0.10 -2.39 5.87 -19.90 -0.12 -2.51 16 19 C -0.11 -1.99 10.01 71.24 0.71 -1.28 16 20 C -0.12 -2.32 9.69 22.33 0.22 -2.10 16 21 C -0.12 -2.39 9.67 22.23 0.21 -2.17 16 22 C -0.08 -2.16 5.89 -19.59 -0.12 -2.27 16 23 C -0.11 -2.39 8.67 71.24 0.62 -1.77 16 24 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.10 2.20 6.51 -2.38 -0.02 2.18 16 26 H 0.06 1.74 6.35 -2.39 -0.02 1.73 16 27 H 0.37 16.28 6.36 -213.32 -1.36 14.92 16 28 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 31 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.10 3.40 8.06 -2.91 -0.02 3.37 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 35 H 0.06 1.15 8.08 -2.38 -0.02 1.13 16 36 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.09 1.54 7.32 -2.39 -0.02 1.52 16 39 H 0.08 1.44 8.05 -2.39 -0.02 1.42 16 40 H 0.04 1.20 7.28 -2.39 -0.02 1.18 16 Total: -1.00 -65.28 330.57 4.43 -60.85 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -0.33 Total: 25.34 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 4.01 Total: -35.74 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -1.28 Total: -95.66 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -65.28 4.43 -60.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.236 kcal (2) G-P(sol) polarization free energy of solvation -65.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds