Wall clock time and date at job start Mon Mar 30 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29751 * 119.99982 * 2 1 4 4 N 1.40097 * 119.99710 * 0.02562 * 3 2 1 5 5 C 1.46501 * 119.99387 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47139 * 329.99072 * 5 4 3 7 7 C 1.52996 * 109.47417 * 89.99744 * 5 4 3 8 8 C 1.50703 * 109.46765 * 209.99915 * 5 4 3 9 9 H 1.08004 * 120.00214 * 359.97438 * 8 5 4 10 10 C 1.37873 * 120.00039 * 180.02562 * 8 5 4 11 11 N 1.31522 * 120.00096 * 179.97438 * 10 8 5 12 12 Si 1.86801 * 120.00136 * 359.97438 * 10 8 5 13 13 H 1.48503 * 109.46823 * 90.00527 * 12 10 8 14 14 H 1.48500 * 109.47223 * 210.00467 * 12 10 8 15 15 H 1.48497 * 109.46844 * 330.00643 * 12 10 8 16 16 C 1.47489 * 120.00174 * 180.02562 * 2 1 3 17 17 C 1.39701 * 120.16083 * 114.36989 * 16 2 1 18 18 C 1.37911 * 119.84789 * 179.97438 * 17 16 2 19 19 C 1.50697 * 119.92354 * 180.02562 * 18 17 16 20 20 C 1.38390 * 120.15525 * 0.02562 * 18 17 16 21 21 C 1.38353 * 120.31522 * 359.95962 * 20 18 17 22 22 C 1.37962 * 120.15501 * 359.78256 * 21 20 18 23 23 C 1.50699 * 120.07844 * 180.23399 * 22 21 20 24 24 H 1.08990 * 109.47481 * 89.99756 * 1 2 3 25 25 H 1.09004 * 109.47229 * 210.00313 * 1 2 3 26 26 H 1.09001 * 109.47084 * 329.99537 * 1 2 3 27 27 H 0.97001 * 120.00305 * 359.97438 * 4 3 2 28 28 H 1.08994 * 109.46970 * 299.99795 * 7 5 4 29 29 H 1.09001 * 109.47379 * 179.97438 * 7 5 4 30 30 H 1.09003 * 109.47271 * 60.00028 * 7 5 4 31 31 H 0.96997 * 119.99595 * 179.97438 * 11 10 8 32 32 H 1.08002 * 120.07121 * 359.96015 * 17 16 2 33 33 H 1.09000 * 109.46982 * 89.99903 * 19 18 17 34 34 H 1.08997 * 109.46974 * 210.00056 * 19 18 17 35 35 H 1.08996 * 109.47333 * 330.00191 * 19 18 17 36 36 H 1.07999 * 119.84352 * 179.97438 * 20 18 17 37 37 H 1.07994 * 119.91994 * 180.02562 * 21 20 18 38 38 H 1.09000 * 109.47180 * 265.04788 * 23 22 21 39 39 H 1.08997 * 109.47253 * 25.05183 * 23 22 21 40 40 H 1.09000 * 109.47110 * 145.05348 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1557 1.1237 0.0000 4 7 1.4552 2.3369 0.0005 5 6 2.1877 3.6056 0.0000 6 1 3.1405 3.4753 0.5132 7 6 2.4417 4.0473 -1.4427 8 6 1.3738 4.6559 0.7110 9 1 0.4073 4.4037 1.1218 10 6 1.8625 5.9390 0.8362 11 7 1.1519 6.8557 1.4563 12 14 3.5337 6.3755 0.1251 13 1 3.3694 6.8408 -1.2756 14 1 4.1501 7.4558 0.9364 15 1 4.4102 5.1770 0.1490 16 6 2.2444 -1.2773 -0.0006 17 6 3.0270 -1.6354 -1.1010 18 6 3.7143 -2.8310 -1.0944 19 6 4.5595 -3.2188 -2.2803 20 6 3.6297 -3.6756 -0.0014 21 6 2.8569 -3.3273 1.0920 22 6 2.1682 -2.1319 1.1014 23 6 1.3311 -1.7519 2.2955 24 1 -0.3634 0.0000 -1.0275 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 0.4852 2.3369 0.0005 28 1 3.0304 3.2877 -1.9569 29 1 2.9864 4.9915 -1.4431 30 1 1.4889 4.1777 -1.9558 31 1 1.4959 7.7584 1.5446 32 1 3.0934 -0.9775 -1.9549 33 1 5.5736 -2.8441 -2.1418 34 1 4.5825 -4.3048 -2.3705 35 1 4.1336 -2.7879 -3.1864 36 1 4.1698 -4.6109 -0.0018 37 1 2.7958 -3.9910 1.9418 38 1 0.2964 -2.0479 2.1229 39 1 1.7112 -2.2594 3.1821 40 1 1.3802 -0.6733 2.4452 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771879646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:25 Heat of formation + Delta-G solvation = 55.365584 kcal Electronic energy + Delta-G solvation = -18940.611288 eV Core-core repulsion = 16141.794632 eV Total energy + Delta-G solvation = -2798.816656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.51990 -36.98416 -34.71628 -33.58649 -32.01099 -30.66076 -29.29853 -28.69506 -26.97779 -25.11177 -24.81492 -23.03080 -21.18692 -20.22404 -18.84956 -16.99250 -15.98726 -15.65625 -15.48059 -15.08834 -14.63283 -14.01137 -13.80705 -13.44480 -13.30824 -13.14268 -12.97849 -12.75026 -12.52527 -12.23505 -12.09557 -11.95634 -11.83397 -11.49992 -11.43880 -11.03424 -10.90608 -10.73506 -10.49265 -10.15664 -9.69411 -9.53338 -9.14589 -8.71339 -8.66134 -8.31021 -7.01651 -6.19736 -4.21619 1.33341 1.48716 2.75785 3.22538 3.33919 3.36375 3.64368 3.94743 4.31057 4.83496 4.86150 4.96163 5.09814 5.14724 5.21583 5.40382 5.52514 5.55183 5.56145 5.61896 5.70048 5.79599 5.81538 5.90455 6.01780 6.08692 6.26507 6.31230 6.34090 6.40683 6.55205 6.59491 6.63035 6.73764 6.81211 7.01589 7.11743 7.36850 7.54380 8.02556 8.43167 8.80686 9.23286 9.41498 10.92849 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026347 B = 0.004530 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.475191 B = 6178.952419 C = 6719.067092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.024 3.976 3 N -0.198 5.198 4 N -0.624 5.624 5 C 0.271 3.729 6 H 0.040 0.960 7 C -0.164 4.164 8 C -0.532 4.532 9 H 0.078 0.922 10 C 0.078 3.922 11 N -0.894 5.894 12 Si 0.889 3.111 13 H -0.277 1.277 14 H -0.294 1.294 15 H -0.264 1.264 16 C 0.003 3.997 17 C -0.094 4.094 18 C -0.096 4.096 19 C -0.112 4.112 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.075 4.075 23 C -0.114 4.114 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.375 0.625 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.267 0.733 32 H 0.121 0.879 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 -20.054 -4.058 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 N -0.009 5.009 4 N -0.361 5.361 5 C 0.167 3.833 6 H 0.058 0.942 7 C -0.222 4.222 8 C -0.571 4.571 9 H 0.096 0.904 10 C -0.126 4.126 11 N -0.531 5.531 12 Si 0.719 3.281 13 H -0.203 1.203 14 H -0.222 1.222 15 H -0.189 1.189 16 C 0.001 3.999 17 C -0.114 4.114 18 C -0.096 4.096 19 C -0.168 4.168 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.076 4.076 23 C -0.170 4.170 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.214 0.786 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.636 -19.229 -3.989 19.972 hybrid contribution -0.380 0.289 -0.380 0.610 sum 3.256 -18.940 -4.370 19.708 Atomic orbital electron populations 1.21023 0.92977 1.02817 1.02213 1.22255 0.92818 0.90811 1.10863 1.74207 1.28092 0.92849 1.05771 1.48550 1.06197 0.99714 1.81673 1.18827 0.93528 0.79094 0.91831 0.94209 1.22577 1.00395 0.99056 1.00203 1.21069 1.05904 0.93374 1.36718 0.90444 1.24822 0.97317 0.95871 0.94570 1.69874 1.37879 1.03301 1.42062 0.86832 0.84610 0.78281 0.78404 1.20342 1.22182 1.18869 1.18072 0.96441 0.91861 0.93553 1.21164 0.96286 0.95760 0.98162 1.19773 0.98730 0.94841 0.96275 1.20757 0.99077 1.01393 0.95598 1.20981 0.99876 0.99550 0.93642 1.20869 0.98086 0.96271 0.98510 1.19975 0.98383 0.94157 0.95118 1.20809 0.98704 1.02671 0.94833 0.91575 0.91236 0.91620 0.78590 0.94817 0.93631 0.92989 0.92301 0.86086 0.91345 0.91832 0.91680 0.86478 0.86206 0.91256 0.91888 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.23 36.00 0.33 -1.52 16 2 C 0.02 0.40 5.32 -79.70 -0.42 -0.03 16 3 N -0.20 -3.97 11.48 35.11 0.40 -3.57 16 4 N -0.62 -13.48 5.95 -5.88 -0.03 -13.52 16 5 C 0.27 6.62 2.82 -69.08 -0.20 6.42 16 6 H 0.04 1.04 7.20 -51.93 -0.37 0.66 16 7 C -0.16 -3.68 9.00 37.16 0.33 -3.34 16 8 C -0.53 -14.75 9.32 -34.44 -0.32 -15.07 16 9 H 0.08 2.30 8.03 -52.48 -0.42 1.88 16 10 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 11 N -0.89 -26.78 13.96 55.43 0.77 -26.00 16 12 Si 0.89 21.74 24.37 -169.99 -4.14 17.59 16 13 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 16 C 0.00 0.04 5.53 -105.05 -0.58 -0.54 16 17 C -0.09 -1.33 9.44 -39.16 -0.37 -1.70 16 18 C -0.10 -1.15 5.87 -104.69 -0.61 -1.76 16 19 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16 20 C -0.12 -1.36 9.69 -39.48 -0.38 -1.74 16 21 C -0.12 -1.37 9.67 -39.64 -0.38 -1.76 16 22 C -0.07 -0.99 5.89 -104.19 -0.61 -1.61 16 23 C -0.11 -1.34 8.67 36.01 0.31 -1.03 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.84 6.51 -51.93 -0.34 0.50 16 26 H 0.07 0.98 6.35 -51.93 -0.33 0.65 16 27 H 0.38 7.67 6.36 -182.60 -1.16 6.51 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.07 0.72 7.32 -51.93 -0.38 0.34 16 39 H 0.06 0.63 8.05 -51.93 -0.42 0.22 16 40 H 0.07 1.00 7.28 -51.93 -0.38 0.62 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -30.25 323.76 -7.72 -37.97 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.95 Total: 4.88 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -2.64 Total: -22.23 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 1.14 Total: -43.09 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.25 -7.72 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.337 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds