Wall clock time and date at job start Mon Mar 30 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29751 * 119.99982 * 2 1 4 4 N 1.40097 * 119.99710 * 0.02562 * 3 2 1 5 5 C 1.46501 * 119.99387 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47139 * 329.99072 * 5 4 3 7 7 C 1.52996 * 109.47417 * 89.99744 * 5 4 3 8 8 C 1.50703 * 109.46765 * 209.99915 * 5 4 3 9 9 H 1.08004 * 120.00214 * 359.97438 * 8 5 4 10 10 C 1.37873 * 120.00039 * 180.02562 * 8 5 4 11 11 N 1.31522 * 120.00096 * 179.97438 * 10 8 5 12 12 Si 1.86801 * 120.00136 * 359.97438 * 10 8 5 13 13 H 1.48503 * 109.46823 * 90.00527 * 12 10 8 14 14 H 1.48500 * 109.47223 * 210.00467 * 12 10 8 15 15 H 1.48497 * 109.46844 * 330.00643 * 12 10 8 16 16 C 1.47489 * 120.00174 * 180.02562 * 2 1 3 17 17 C 1.39701 * 120.16083 * 114.36989 * 16 2 1 18 18 C 1.37911 * 119.84789 * 179.97438 * 17 16 2 19 19 C 1.50697 * 119.92354 * 180.02562 * 18 17 16 20 20 C 1.38390 * 120.15525 * 0.02562 * 18 17 16 21 21 C 1.38353 * 120.31522 * 359.95962 * 20 18 17 22 22 C 1.37962 * 120.15501 * 359.78256 * 21 20 18 23 23 C 1.50699 * 120.07844 * 180.23399 * 22 21 20 24 24 H 1.08990 * 109.47481 * 89.99756 * 1 2 3 25 25 H 1.09004 * 109.47229 * 210.00313 * 1 2 3 26 26 H 1.09001 * 109.47084 * 329.99537 * 1 2 3 27 27 H 0.97001 * 120.00305 * 359.97438 * 4 3 2 28 28 H 1.08994 * 109.46970 * 299.99795 * 7 5 4 29 29 H 1.09001 * 109.47379 * 179.97438 * 7 5 4 30 30 H 1.09003 * 109.47271 * 60.00028 * 7 5 4 31 31 H 0.96997 * 119.99595 * 179.97438 * 11 10 8 32 32 H 1.08002 * 120.07121 * 359.96015 * 17 16 2 33 33 H 1.09000 * 109.46982 * 89.99903 * 19 18 17 34 34 H 1.08997 * 109.46974 * 210.00056 * 19 18 17 35 35 H 1.08996 * 109.47333 * 330.00191 * 19 18 17 36 36 H 1.07999 * 119.84352 * 179.97438 * 20 18 17 37 37 H 1.07994 * 119.91994 * 180.02562 * 21 20 18 38 38 H 1.09000 * 109.47180 * 265.04788 * 23 22 21 39 39 H 1.08997 * 109.47253 * 25.05183 * 23 22 21 40 40 H 1.09000 * 109.47110 * 145.05348 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1557 1.1237 0.0000 4 7 1.4552 2.3369 0.0005 5 6 2.1877 3.6056 0.0000 6 1 3.1405 3.4753 0.5132 7 6 2.4417 4.0473 -1.4427 8 6 1.3738 4.6559 0.7110 9 1 0.4073 4.4037 1.1218 10 6 1.8625 5.9390 0.8362 11 7 1.1519 6.8557 1.4563 12 14 3.5337 6.3755 0.1251 13 1 3.3694 6.8408 -1.2756 14 1 4.1501 7.4558 0.9364 15 1 4.4102 5.1770 0.1490 16 6 2.2444 -1.2773 -0.0006 17 6 3.0270 -1.6354 -1.1010 18 6 3.7143 -2.8310 -1.0944 19 6 4.5595 -3.2188 -2.2803 20 6 3.6297 -3.6756 -0.0014 21 6 2.8569 -3.3273 1.0920 22 6 2.1682 -2.1319 1.1014 23 6 1.3311 -1.7519 2.2955 24 1 -0.3634 0.0000 -1.0275 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 0.4852 2.3369 0.0005 28 1 3.0304 3.2877 -1.9569 29 1 2.9864 4.9915 -1.4431 30 1 1.4889 4.1777 -1.9558 31 1 1.4959 7.7584 1.5446 32 1 3.0934 -0.9775 -1.9549 33 1 5.5736 -2.8441 -2.1418 34 1 4.5825 -4.3048 -2.3705 35 1 4.1336 -2.7879 -3.1864 36 1 4.1698 -4.6109 -0.0018 37 1 2.7958 -3.9910 1.9418 38 1 0.2964 -2.0479 2.1229 39 1 1.7112 -2.2594 3.1821 40 1 1.3802 -0.6733 2.4452 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771879646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:25 Heat of formation + Delta-G solvation = 37.388551 kcal Electronic energy + Delta-G solvation = -18941.390830 eV Core-core repulsion = 16141.794632 eV Total energy + Delta-G solvation = -2799.596198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53400 -38.45162 -36.36294 -34.72786 -33.82925 -32.01709 -30.21433 -29.94181 -28.44367 -27.14763 -25.74204 -24.14801 -22.53529 -21.72235 -20.24691 -18.77293 -17.60322 -17.00376 -16.59638 -16.39221 -15.97412 -15.37199 -15.12340 -14.78210 -14.53338 -14.47430 -14.15219 -14.07434 -13.83276 -13.62664 -13.33260 -13.31275 -13.08961 -12.74457 -12.71199 -12.36614 -12.25883 -12.03964 -11.88927 -11.78604 -11.52875 -11.32971 -10.88022 -10.83008 -9.70657 -9.28383 -8.59006 -8.38419 -6.45232 0.31530 0.52537 1.28276 1.35113 1.41720 1.45489 2.19906 2.26377 2.87312 2.97305 3.69427 3.98221 4.02571 4.18873 4.26806 4.38810 4.40152 4.46484 4.52181 4.61011 4.63855 4.73009 4.76304 4.83336 4.87448 4.88066 4.94947 4.97477 5.08899 5.17127 5.24431 5.30443 5.42347 5.48853 5.57393 5.61253 5.76151 5.82741 6.07968 6.16996 6.48426 6.62624 7.21608 7.73096 8.77553 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026347 B = 0.004530 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.475191 B = 6178.952419 C = 6719.067092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.062 3.938 3 N -0.245 5.245 4 N -0.641 5.641 5 C 0.280 3.720 6 H 0.022 0.978 7 C -0.155 4.155 8 C -0.536 4.536 9 H 0.041 0.959 10 C 0.026 3.974 11 N -0.939 5.939 12 Si 0.949 3.051 13 H -0.259 1.259 14 H -0.292 1.292 15 H -0.255 1.255 16 C -0.032 4.032 17 C -0.110 4.110 18 C -0.100 4.100 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.084 4.084 23 C -0.112 4.112 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.375 0.625 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.271 0.729 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 -23.043 -4.850 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 N -0.054 5.054 4 N -0.379 5.379 5 C 0.175 3.825 6 H 0.039 0.961 7 C -0.214 4.214 8 C -0.575 4.575 9 H 0.060 0.940 10 C -0.174 4.174 11 N -0.578 5.578 12 Si 0.775 3.225 13 H -0.185 1.185 14 H -0.219 1.219 15 H -0.179 1.179 16 C -0.034 4.034 17 C -0.130 4.130 18 C -0.100 4.100 19 C -0.167 4.167 20 C -0.135 4.135 21 C -0.136 4.136 22 C -0.086 4.086 23 C -0.169 4.169 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.214 0.786 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.020 -22.238 -4.793 23.296 hybrid contribution -0.883 0.926 -0.075 1.281 sum 4.137 -21.312 -4.868 22.249 Atomic orbital electron populations 1.21108 0.91470 1.03412 1.03233 1.22916 0.94283 0.90727 1.05176 1.74243 1.28490 0.92967 1.09719 1.48152 1.05834 0.99752 1.84145 1.18462 0.92083 0.79626 0.92334 0.96059 1.22446 1.00776 0.99262 0.98928 1.21296 1.04907 0.94655 1.36631 0.94027 1.25647 1.01143 0.95699 0.94887 1.70002 1.40014 1.03925 1.43830 0.85855 0.79953 0.78226 0.78432 1.18477 1.21886 1.17949 1.18204 0.98277 0.91626 0.95288 1.21210 0.97043 0.96907 0.97837 1.20104 0.98283 0.94009 0.97620 1.20810 0.98648 1.02849 0.94422 1.21408 0.99021 1.00291 0.92741 1.21226 0.97007 0.95754 0.99584 1.20159 0.98960 0.94660 0.94796 1.20819 0.99733 1.00975 0.95336 0.90230 0.88776 0.92769 0.78577 0.93141 0.93890 0.92759 0.92009 0.87047 0.90876 0.89650 0.91596 0.83307 0.83320 0.89687 0.89850 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.23 71.23 0.66 -3.05 16 2 C 0.06 2.05 5.32 45.31 0.24 2.29 16 3 N -0.25 -10.06 11.48 -42.82 -0.49 -10.55 16 4 N -0.64 -28.63 5.95 -172.52 -1.03 -29.66 16 5 C 0.28 13.97 2.82 44.24 0.12 14.10 16 6 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 7 C -0.16 -6.92 9.00 71.98 0.65 -6.27 16 8 C -0.54 -30.87 9.32 25.60 0.24 -30.64 16 9 H 0.04 2.62 8.03 -2.91 -0.02 2.60 16 10 C 0.03 1.48 5.45 84.65 0.46 1.94 16 11 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 12 Si 0.95 45.00 24.37 68.60 1.67 46.67 16 13 H -0.26 -11.51 6.87 99.48 0.68 -10.83 16 14 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 15 H -0.26 -11.67 6.53 99.48 0.65 -11.02 16 16 C -0.03 -0.93 5.53 -20.14 -0.11 -1.04 16 17 C -0.11 -3.00 9.44 22.55 0.21 -2.78 16 18 C -0.10 -2.14 5.87 -19.91 -0.12 -2.26 16 19 C -0.11 -1.71 10.01 71.23 0.71 -1.00 16 20 C -0.12 -2.14 9.69 22.33 0.22 -1.93 16 21 C -0.12 -2.30 9.67 22.23 0.21 -2.09 16 22 C -0.08 -2.07 5.89 -19.59 -0.12 -2.18 16 23 C -0.11 -2.46 8.67 71.24 0.62 -1.84 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.09 2.14 6.51 -2.38 -0.02 2.12 16 26 H 0.05 1.66 6.35 -2.39 -0.02 1.64 16 27 H 0.38 16.08 6.36 -213.32 -1.36 14.72 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.91 3.27 -2.39 -0.01 1.90 16 30 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.11 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 35 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 36 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 37 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.08 1.56 7.32 -2.39 -0.02 1.54 16 39 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 40 H 0.04 1.19 7.28 -2.39 -0.02 1.17 16 Total: -1.00 -67.39 323.76 4.05 -63.34 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -0.41 Total: 24.53 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: 4.00 Total: -36.74 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -1.22 Total: -97.79 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.67 Total: 46.67 kcal Total: -67.39 4.05 -63.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.727 kcal (2) G-P(sol) polarization free energy of solvation -67.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds