Wall clock time and date at job start Mon Mar 30 2020 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47226 * 2 1 4 4 C 1.38373 * 119.84135 * 89.99815 * 3 2 1 5 5 C 1.37939 * 120.15517 * 180.02562 * 4 3 2 6 6 C 1.39679 * 119.83722 * 359.97438 * 5 4 3 7 7 C 1.47498 * 120.15025 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.99918 * 179.97438 * 7 6 5 9 9 N 1.29748 * 119.99987 * 0.02562 * 7 6 5 10 10 N 1.40100 * 119.99745 * 180.02562 * 9 7 6 11 11 C 1.46500 * 119.99636 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46923 * 329.99243 * 11 10 9 13 13 C 1.52998 * 109.47382 * 89.99997 * 11 10 9 14 14 C 1.50698 * 109.46735 * 209.99456 * 11 10 9 15 15 H 1.08003 * 120.00072 * 356.71410 * 14 11 10 16 16 C 1.37875 * 120.00245 * 176.70742 * 14 11 10 17 17 N 1.31514 * 120.00083 * 352.37159 * 16 14 11 18 18 Si 1.86802 * 120.00225 * 172.63566 * 16 14 11 19 19 H 1.48498 * 109.47368 * 264.80507 * 18 16 14 20 20 H 1.48493 * 109.46898 * 24.80867 * 18 16 14 21 21 H 1.48505 * 109.46843 * 144.80597 * 18 16 14 22 22 C 1.39676 * 119.69270 * 0.25212 * 6 5 4 23 23 C 1.37932 * 119.84390 * 359.53430 * 22 6 5 24 24 H 1.08993 * 109.47208 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46599 * 299.99976 * 1 2 3 26 26 H 1.08992 * 109.46750 * 59.99918 * 1 2 3 27 27 H 1.08994 * 109.47023 * 239.99917 * 2 1 3 28 28 H 1.09001 * 109.47319 * 120.00038 * 2 1 3 29 29 H 1.07999 * 119.92124 * 0.02562 * 4 3 2 30 30 H 1.07996 * 120.07536 * 179.97438 * 5 4 3 31 31 H 1.09007 * 109.46975 * 270.00230 * 8 7 6 32 32 H 1.08998 * 109.46956 * 29.99916 * 8 7 6 33 33 H 1.08990 * 109.46887 * 150.00180 * 8 7 6 34 34 H 0.96999 * 120.00200 * 359.97438 * 10 9 7 35 35 H 1.09002 * 109.46592 * 298.23188 * 13 11 10 36 36 H 1.08997 * 109.47717 * 58.23337 * 13 11 10 37 37 H 1.08995 * 109.47232 * 178.23571 * 13 11 10 38 38 H 0.96998 * 120.00505 * 180.27043 * 17 16 14 39 39 H 1.08006 * 120.07940 * 179.72650 * 22 6 5 40 40 H 1.07995 * 119.92675 * 180.18567 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2619 2.0700 1.2003 5 6 2.7212 3.3707 1.2078 6 6 2.9551 4.0321 0.0000 7 6 3.4457 5.4231 0.0000 8 6 3.6975 6.1333 -1.3051 9 7 3.6615 6.0349 1.1237 10 7 4.1270 7.3563 1.1236 11 6 4.3711 8.0469 2.3924 12 1 3.6911 7.6619 3.1523 13 6 5.8166 7.8081 2.8332 14 6 4.1385 9.5249 2.2126 15 1 3.8907 9.9179 1.2376 16 6 4.2420 10.3755 3.2927 17 7 4.3944 9.8854 4.5035 18 14 4.1583 12.2241 3.0372 19 1 5.5344 12.7719 2.9302 20 1 3.4100 12.5178 1.7887 21 1 3.4638 12.8521 4.1899 22 6 2.7167 3.3722 -1.2077 23 6 2.2617 2.0701 -1.2002 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3632 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.0810 1.5571 2.1333 30 1 2.8995 3.8762 2.1453 31 1 4.7274 5.9626 -1.6188 32 1 3.0177 5.7484 -2.0652 33 1 3.5296 7.2023 -1.1752 34 1 4.2883 7.8137 0.2836 35 1 5.9760 6.7417 2.9935 36 1 6.4962 8.1647 2.0593 37 1 6.0074 8.3474 3.7609 38 1 4.4632 10.4836 5.2639 39 1 2.8913 3.8792 -2.1453 40 1 2.0798 1.5576 -2.1332 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771884664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:39 Heat of formation + Delta-G solvation = 45.556649 kcal Electronic energy + Delta-G solvation = -18474.510084 eV Core-core repulsion = 15675.268081 eV Total energy + Delta-G solvation = -2799.242003 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.29767 -36.96509 -34.78125 -33.55941 -31.64661 -30.88027 -29.50698 -28.13968 -26.71960 -25.19327 -23.97065 -22.24054 -21.33736 -20.36914 -18.98619 -17.19600 -15.95870 -15.68837 -15.13649 -14.90981 -14.40959 -14.08120 -13.82276 -13.55636 -13.53877 -13.17806 -12.93077 -12.54428 -12.29846 -12.08540 -11.84185 -11.57073 -11.40605 -11.27658 -11.05044 -10.85101 -10.78032 -10.68950 -10.49795 -10.28084 -10.14537 -9.44121 -9.07265 -8.73794 -8.60318 -8.45504 -6.72168 -6.16642 -4.22499 1.25935 1.63575 3.00935 3.23112 3.30146 3.32484 3.82790 4.14613 4.36086 4.76257 4.85264 5.01843 5.16886 5.18338 5.19684 5.28233 5.47278 5.55438 5.60698 5.64042 5.75728 5.81462 5.85414 5.96988 6.05705 6.15465 6.26510 6.34239 6.55725 6.73833 6.76895 6.83426 6.93886 7.06328 7.10278 7.21531 7.54971 7.74662 7.77041 8.14367 8.26269 8.84929 9.32971 9.43385 10.91066 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037523 B = 0.003477 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.020663 B = 8051.141744 C = 8333.229203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.097 4.097 4 C -0.117 4.117 5 C -0.098 4.098 6 C 0.000 4.000 7 C 0.008 3.992 8 C -0.131 4.131 9 N -0.191 5.191 10 N -0.620 5.620 11 C 0.295 3.705 12 H 0.046 0.954 13 C -0.145 4.145 14 C -0.532 4.532 15 H 0.059 0.941 16 C 0.069 3.931 17 N -0.884 5.884 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.274 1.274 21 H -0.285 1.285 22 C -0.115 4.115 23 C -0.118 4.118 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.370 0.630 35 H 0.016 0.984 36 H 0.027 0.973 37 H 0.077 0.923 38 H 0.265 0.735 39 H 0.123 0.877 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.058 -15.592 -10.075 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.135 4.135 5 C -0.118 4.118 6 C -0.003 4.003 7 C -0.179 4.179 8 C -0.191 4.191 9 N -0.005 5.005 10 N -0.357 5.357 11 C 0.193 3.807 12 H 0.064 0.936 13 C -0.205 4.205 14 C -0.572 4.572 15 H 0.078 0.922 16 C -0.135 4.135 17 N -0.521 5.521 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.198 1.198 21 H -0.210 1.210 22 C -0.136 4.136 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.149 0.851 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.208 0.792 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.022 -15.462 -8.673 18.179 hybrid contribution 0.189 1.539 -1.181 1.950 sum -3.833 -13.923 -9.854 17.483 Atomic orbital electron populations 1.21753 0.95014 1.01316 1.02315 1.20500 0.95967 0.93037 1.02430 1.19861 1.00572 0.96119 0.93304 1.20932 1.00366 0.94898 0.97272 1.21375 0.97941 0.94145 0.98340 1.18286 0.97846 0.90955 0.93176 1.22314 1.09732 0.94715 0.91179 1.20967 1.01913 1.00224 0.95970 1.74061 1.04008 0.96905 1.25526 1.49071 1.70912 1.06035 1.09720 1.18542 0.92544 0.89855 0.79798 0.93591 1.22137 0.99038 0.97537 1.01771 1.21208 1.49330 0.91164 0.95479 0.92232 1.24857 0.94703 0.99146 0.94775 1.69952 1.48766 1.35176 0.98247 0.86457 0.78180 0.84726 0.77905 1.20514 1.19848 1.21038 1.21160 1.00545 0.94656 0.97239 1.20799 1.00893 0.94737 0.97175 0.92742 0.92501 0.92613 0.91402 0.91314 0.86388 0.85068 0.91639 0.91287 0.91861 0.79225 0.96494 0.95368 0.90426 0.92550 0.85925 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.90 37.16 0.37 -0.83 16 2 C -0.08 -0.73 6.06 -27.88 -0.17 -0.90 16 3 C -0.10 -1.13 5.14 -104.52 -0.54 -1.67 16 4 C -0.12 -1.51 9.68 -39.64 -0.38 -1.90 16 5 C -0.10 -1.52 9.58 -39.15 -0.38 -1.89 16 6 C 0.00 -0.01 5.87 -105.05 -0.62 -0.62 16 7 C 0.01 0.14 7.10 -79.70 -0.57 -0.43 16 8 C -0.13 -1.91 9.04 36.01 0.33 -1.59 16 9 N -0.19 -4.01 10.61 35.12 0.37 -3.64 16 10 N -0.62 -13.92 5.95 -5.88 -0.04 -13.96 16 11 C 0.29 7.57 3.12 -69.08 -0.22 7.35 16 12 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.15 -3.57 9.35 37.16 0.35 -3.22 16 14 C -0.53 -14.39 8.69 -34.44 -0.30 -14.69 16 15 H 0.06 1.58 7.78 -52.48 -0.41 1.17 16 16 C 0.07 1.86 5.21 -17.82 -0.09 1.77 16 17 N -0.88 -24.87 11.92 55.43 0.66 -24.21 16 18 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.12 -1.50 9.37 -39.16 -0.37 -1.86 16 23 C -0.12 -1.36 9.68 -39.64 -0.38 -1.75 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.13 2.19 7.55 -52.49 -0.40 1.79 16 31 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.07 0.83 6.46 -51.93 -0.34 0.50 16 33 H 0.06 0.97 6.35 -51.93 -0.33 0.64 16 34 H 0.37 7.71 6.35 -182.60 -1.16 6.56 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 2.03 6.60 -51.93 -0.34 1.69 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.12 1.35 6.35 -52.48 -0.33 1.02 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -28.70 332.16 -9.07 -37.77 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.09 Total: 5.46 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -2.96 Total: -22.22 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 1.00 Total: -41.80 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.70 -9.07 -37.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.325 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds