Wall clock time and date at job start Mon Mar 30 2020 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47226 * 2 1 4 4 C 1.38373 * 119.84135 * 89.99815 * 3 2 1 5 5 C 1.37939 * 120.15517 * 180.02562 * 4 3 2 6 6 C 1.39679 * 119.83722 * 359.97438 * 5 4 3 7 7 C 1.47498 * 120.15025 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.99918 * 179.97438 * 7 6 5 9 9 N 1.29748 * 119.99987 * 0.02562 * 7 6 5 10 10 N 1.40100 * 119.99745 * 180.02562 * 9 7 6 11 11 C 1.46500 * 119.99636 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46923 * 329.99243 * 11 10 9 13 13 C 1.52998 * 109.47382 * 89.99997 * 11 10 9 14 14 C 1.50698 * 109.46735 * 209.99456 * 11 10 9 15 15 H 1.08003 * 120.00072 * 356.71410 * 14 11 10 16 16 C 1.37875 * 120.00245 * 176.70742 * 14 11 10 17 17 N 1.31514 * 120.00083 * 352.37159 * 16 14 11 18 18 Si 1.86802 * 120.00225 * 172.63566 * 16 14 11 19 19 H 1.48498 * 109.47368 * 264.80507 * 18 16 14 20 20 H 1.48493 * 109.46898 * 24.80867 * 18 16 14 21 21 H 1.48505 * 109.46843 * 144.80597 * 18 16 14 22 22 C 1.39676 * 119.69270 * 0.25212 * 6 5 4 23 23 C 1.37932 * 119.84390 * 359.53430 * 22 6 5 24 24 H 1.08993 * 109.47208 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46599 * 299.99976 * 1 2 3 26 26 H 1.08992 * 109.46750 * 59.99918 * 1 2 3 27 27 H 1.08994 * 109.47023 * 239.99917 * 2 1 3 28 28 H 1.09001 * 109.47319 * 120.00038 * 2 1 3 29 29 H 1.07999 * 119.92124 * 0.02562 * 4 3 2 30 30 H 1.07996 * 120.07536 * 179.97438 * 5 4 3 31 31 H 1.09007 * 109.46975 * 270.00230 * 8 7 6 32 32 H 1.08998 * 109.46956 * 29.99916 * 8 7 6 33 33 H 1.08990 * 109.46887 * 150.00180 * 8 7 6 34 34 H 0.96999 * 120.00200 * 359.97438 * 10 9 7 35 35 H 1.09002 * 109.46592 * 298.23188 * 13 11 10 36 36 H 1.08997 * 109.47717 * 58.23337 * 13 11 10 37 37 H 1.08995 * 109.47232 * 178.23571 * 13 11 10 38 38 H 0.96998 * 120.00505 * 180.27043 * 17 16 14 39 39 H 1.08006 * 120.07940 * 179.72650 * 22 6 5 40 40 H 1.07995 * 119.92675 * 180.18567 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2619 2.0700 1.2003 5 6 2.7212 3.3707 1.2078 6 6 2.9551 4.0321 0.0000 7 6 3.4457 5.4231 0.0000 8 6 3.6975 6.1333 -1.3051 9 7 3.6615 6.0349 1.1237 10 7 4.1270 7.3563 1.1236 11 6 4.3711 8.0469 2.3924 12 1 3.6911 7.6619 3.1523 13 6 5.8166 7.8081 2.8332 14 6 4.1385 9.5249 2.2126 15 1 3.8907 9.9179 1.2376 16 6 4.2420 10.3755 3.2927 17 7 4.3944 9.8854 4.5035 18 14 4.1583 12.2241 3.0372 19 1 5.5344 12.7719 2.9302 20 1 3.4100 12.5178 1.7887 21 1 3.4638 12.8521 4.1899 22 6 2.7167 3.3722 -1.2077 23 6 2.2617 2.0701 -1.2002 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3632 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.0810 1.5571 2.1333 30 1 2.8995 3.8762 2.1453 31 1 4.7274 5.9626 -1.6188 32 1 3.0177 5.7484 -2.0652 33 1 3.5296 7.2023 -1.1752 34 1 4.2883 7.8137 0.2836 35 1 5.9760 6.7417 2.9935 36 1 6.4962 8.1647 2.0593 37 1 6.0074 8.3474 3.7609 38 1 4.4632 10.4836 5.2639 39 1 2.8913 3.8792 -2.1453 40 1 2.0798 1.5576 -2.1332 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771884664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:39 Heat of formation + Delta-G solvation = 30.626606 kcal Electronic energy + Delta-G solvation = -18475.157500 eV Core-core repulsion = 15675.268081 eV Total energy + Delta-G solvation = -2799.889418 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37035 -38.43001 -36.38976 -34.81992 -33.32797 -31.96517 -30.89521 -29.26383 -28.28604 -27.24975 -24.94295 -23.30535 -22.65600 -21.88017 -20.38784 -18.84039 -17.54252 -16.97123 -16.73469 -16.06606 -15.65646 -15.42369 -15.10338 -14.73602 -14.55105 -14.43721 -14.10022 -14.01238 -13.94039 -13.28721 -13.17987 -12.88359 -12.83760 -12.72625 -12.54910 -12.39194 -12.14276 -12.08410 -11.90514 -11.69379 -11.59953 -11.15869 -10.77349 -10.58204 -9.77771 -9.75513 -8.34017 -8.17520 -6.36516 0.11713 0.59384 1.41066 1.41695 1.52629 1.73059 2.20576 2.47382 3.04152 3.08480 3.73904 3.96119 4.01704 4.20487 4.28009 4.37074 4.53293 4.58898 4.63437 4.67517 4.73015 4.76448 4.79541 4.91700 5.04683 5.06052 5.13738 5.16208 5.19081 5.27962 5.33234 5.46274 5.49584 5.64162 5.68702 5.73976 5.79477 5.89964 6.17321 6.19138 6.41042 6.83635 7.34378 7.80668 8.85655 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037523 B = 0.003477 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.020663 B = 8051.141744 C = 8333.229203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.085 4.085 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.040 4.040 7 C 0.041 3.959 8 C -0.133 4.133 9 N -0.250 5.250 10 N -0.639 5.639 11 C 0.306 3.694 12 H 0.000 1.000 13 C -0.131 4.131 14 C -0.549 4.549 15 H 0.061 0.939 16 C 0.020 3.980 17 N -0.916 5.916 18 Si 0.969 3.031 19 H -0.271 1.271 20 H -0.268 1.268 21 H -0.282 1.282 22 C -0.103 4.103 23 C -0.117 4.117 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.374 0.626 35 H 0.019 0.981 36 H 0.036 0.964 37 H 0.056 0.944 38 H 0.267 0.733 39 H 0.148 0.852 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 -17.207 -12.931 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.144 4.144 5 C -0.136 4.136 6 C -0.042 4.042 7 C -0.148 4.148 8 C -0.192 4.192 9 N -0.061 5.061 10 N -0.377 5.377 11 C 0.202 3.798 12 H 0.018 0.982 13 C -0.190 4.190 14 C -0.588 4.588 15 H 0.079 0.921 16 C -0.181 4.181 17 N -0.554 5.554 18 Si 0.794 3.206 19 H -0.196 1.196 20 H -0.192 1.192 21 H -0.208 1.208 22 C -0.124 4.124 23 C -0.135 4.135 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.149 0.851 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.213 0.787 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.166 0.834 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.669 -17.094 -11.540 21.146 hybrid contribution 0.269 1.700 -0.425 1.773 sum -4.400 -15.393 -11.965 19.987 Atomic orbital electron populations 1.21746 0.94363 1.02384 1.01822 1.20589 0.96368 0.91094 1.03829 1.20294 0.98249 0.97403 0.92711 1.21121 1.00363 0.94024 0.98910 1.21340 0.99206 0.95423 0.97583 1.18436 1.00792 0.90469 0.94531 1.23116 1.04684 0.95192 0.91798 1.21078 1.03721 0.99374 0.95052 1.74110 1.07926 0.96577 1.27475 1.48502 1.73826 1.07050 1.08334 1.18094 0.91720 0.89600 0.80359 0.98229 1.21949 0.98894 0.97319 1.00842 1.21502 1.49533 0.92100 0.95680 0.92116 1.25730 0.94142 1.03837 0.94362 1.70081 1.49426 1.36832 0.99054 0.85377 0.78487 0.78858 0.77889 1.19586 1.19200 1.20751 1.21450 0.98884 0.95179 0.96856 1.21233 0.99533 0.94187 0.98547 0.90972 0.93590 0.92553 0.89412 0.90623 0.85094 0.87803 0.90000 0.88074 0.92838 0.78703 0.96214 0.94506 0.92528 0.92375 0.83443 0.82987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.90 71.98 0.71 -1.19 16 2 C -0.08 -1.14 6.06 29.85 0.18 -0.96 16 3 C -0.09 -1.73 5.14 -19.80 -0.10 -1.83 16 4 C -0.13 -3.16 9.68 22.23 0.22 -2.95 16 5 C -0.12 -3.65 9.58 22.55 0.22 -3.44 16 6 C -0.04 -1.23 5.87 -20.14 -0.12 -1.35 16 7 C 0.04 1.45 7.10 45.31 0.32 1.78 16 8 C -0.13 -3.65 9.04 71.24 0.64 -3.01 16 9 N -0.25 -11.03 10.61 -42.81 -0.45 -11.48 16 10 N -0.64 -30.09 5.95 -172.53 -1.03 -31.11 16 11 C 0.31 16.63 3.12 44.24 0.14 16.76 16 12 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 13 C -0.13 -6.71 9.35 71.98 0.67 -6.04 16 14 C -0.55 -30.67 8.69 25.60 0.22 -30.45 16 15 H 0.06 3.29 7.78 -2.91 -0.02 3.26 16 16 C 0.02 1.09 5.21 84.65 0.44 1.53 16 17 N -0.92 -53.31 11.92 21.45 0.26 -53.05 16 18 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.10 -2.36 9.37 22.54 0.21 -2.15 16 23 C -0.12 -2.24 9.68 22.23 0.22 -2.02 16 24 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 28 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 29 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.10 3.79 7.55 -2.91 -0.02 3.77 16 31 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.10 2.10 6.46 -2.39 -0.02 2.08 16 33 H 0.05 1.60 6.35 -2.39 -0.02 1.59 16 34 H 0.37 16.17 6.35 -213.32 -1.35 14.81 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 3.10 6.60 -2.39 -0.02 3.09 16 38 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.15 2.57 6.35 -2.91 -0.02 2.55 16 40 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -65.30 332.16 4.44 -60.86 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -0.34 Total: 24.88 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 3.97 Total: -35.31 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -1.23 Total: -95.65 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -65.30 4.44 -60.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.491 kcal (2) G-P(sol) polarization free energy of solvation -65.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds