Wall clock time and date at job start Mon Mar 30 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50701 * 120.00455 * 2 1 4 4 C 1.50701 * 109.47507 * 270.33357 * 3 2 1 5 5 C 1.38256 * 119.99978 * 93.63627 * 4 3 2 6 6 C 1.38210 * 119.99595 * 179.97438 * 5 4 3 7 7 C 1.38262 * 120.00596 * 0.02562 * 6 5 4 8 8 C 1.38217 * 119.99291 * 359.97438 * 7 6 5 9 9 C 1.38213 * 119.99719 * 273.36640 * 4 3 2 10 10 C 1.50702 * 120.00122 * 359.97438 * 9 4 3 11 11 N 1.28013 * 120.00042 * 180.02562 * 2 1 3 12 12 N 1.40097 * 119.99957 * 0.02562 * 11 2 1 13 13 C 1.46503 * 120.00008 * 180.02562 * 12 11 2 14 14 H 1.08996 * 109.47301 * 29.98840 * 13 12 11 15 15 C 1.53002 * 109.46604 * 269.99455 * 13 12 11 16 16 C 1.50692 * 109.47272 * 149.99876 * 13 12 11 17 17 H 1.08000 * 120.00571 * 5.35607 * 16 13 12 18 18 C 1.37884 * 120.00173 * 185.36283 * 16 13 12 19 19 N 1.31512 * 120.00260 * 187.00316 * 18 16 13 20 20 Si 1.86803 * 119.99527 * 7.28483 * 18 16 13 21 21 H 1.48501 * 109.46988 * 269.72209 * 20 18 16 22 22 H 1.48496 * 109.47601 * 29.72336 * 20 18 16 23 23 H 1.48499 * 109.46941 * 149.72623 * 20 18 16 24 24 H 1.09001 * 109.47079 * 264.62161 * 1 2 3 25 25 H 1.08996 * 109.47050 * 24.62161 * 1 2 3 26 26 H 1.09002 * 109.46707 * 144.62146 * 1 2 3 27 27 H 1.09006 * 109.46758 * 30.32660 * 3 2 1 28 28 H 1.09000 * 109.47512 * 150.32697 * 3 2 1 29 29 H 1.08002 * 120.00340 * 0.02562 * 5 4 3 30 30 H 1.08006 * 120.00064 * 180.02562 * 6 5 4 31 31 H 1.07996 * 120.00331 * 179.97438 * 7 6 5 32 32 H 1.08001 * 119.99369 * 179.97438 * 8 7 6 33 33 H 1.08995 * 109.46997 * 84.43451 * 10 9 4 34 34 H 1.08997 * 109.46954 * 204.43966 * 10 9 4 35 35 H 1.09007 * 109.46912 * 324.43472 * 10 9 4 36 36 H 0.96999 * 120.00393 * 359.97438 * 12 11 2 37 37 H 1.09004 * 109.46788 * 174.42433 * 15 13 12 38 38 H 1.09003 * 109.46995 * 294.42419 * 15 13 12 39 39 H 1.09003 * 109.47046 * 54.42825 * 15 13 12 40 40 H 0.96999 * 120.00271 * 355.16556 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.5047 1.7443 -1.4208 5 6 1.6178 2.6052 -2.0402 6 6 1.8420 3.0084 -3.3430 7 6 2.9528 2.5505 -4.0271 8 6 3.8394 1.6898 -3.4077 9 6 3.6181 1.2908 -2.1026 10 6 4.5883 0.3577 -1.4251 11 7 2.1470 -1.1086 -0.0005 12 7 1.4466 -2.3219 -0.0016 13 6 2.1791 -3.5906 -0.0016 14 1 3.1311 -3.4605 0.5128 15 6 2.4350 -4.0316 -1.4441 16 6 1.3642 -4.6412 0.7077 17 1 0.3625 -4.4137 1.0412 18 6 1.8974 -5.8930 0.9311 19 7 1.1430 -6.8507 1.4243 20 14 3.6934 -6.2263 0.5404 21 1 3.8149 -6.7036 -0.8606 22 1 4.4767 -4.9757 0.7070 23 1 4.2165 -7.2647 1.4641 24 1 -0.3633 -0.0963 1.0232 25 1 -0.3633 0.9342 -0.4281 26 1 -0.3633 -0.8379 -0.5950 27 1 1.6740 2.0633 0.5189 28 1 3.2155 1.1733 0.5087 29 1 0.7503 2.9633 -1.5058 30 1 1.1495 3.6813 -3.8269 31 1 3.1278 2.8652 -5.0452 32 1 4.7069 1.3317 -3.9422 33 1 4.2316 -0.6680 -1.5189 34 1 5.5671 0.4465 -1.8964 35 1 4.6680 0.6197 -0.3700 36 1 0.4766 -2.3220 -0.0016 37 1 3.0642 -4.9217 -1.4457 38 1 1.4852 -4.2572 -1.9291 39 1 2.9380 -3.2302 -1.9853 40 1 0.2320 -6.6589 1.6965 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:39 Heat of formation + Delta-G solvation = 32.277201 kcal Electronic energy + Delta-G solvation = -19215.637978 eV Core-core repulsion = 16415.820135 eV Total energy + Delta-G solvation = -2799.817843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50358 -38.64137 -36.50411 -34.43322 -33.56590 -32.80020 -30.54745 -28.71535 -28.08732 -27.04803 -26.60314 -22.96552 -22.27969 -21.60711 -20.42058 -19.37813 -17.37435 -17.13474 -16.74589 -16.16546 -15.88924 -15.53410 -15.16869 -14.80586 -14.57673 -14.42246 -14.10703 -13.92130 -13.69753 -13.50711 -13.34430 -13.20463 -13.09878 -12.68665 -12.54021 -12.44464 -12.23511 -11.87132 -11.73825 -11.65680 -11.52133 -10.94715 -10.75114 -10.64831 -9.62392 -9.39490 -8.90741 -8.49433 -6.47888 0.50332 0.57120 1.42120 1.52499 1.58265 1.69791 2.30817 2.42752 2.94717 3.03514 3.91861 3.99700 4.04480 4.18342 4.22790 4.31885 4.43104 4.49012 4.53841 4.61631 4.62830 4.73638 4.80181 4.82292 4.87313 4.93839 4.99120 5.04212 5.07229 5.18374 5.35512 5.42603 5.46985 5.62220 5.66760 5.68900 5.86778 5.92198 6.06015 6.22432 6.26463 6.72676 7.32155 7.85238 8.58692 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.028112 B = 0.004827 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.773588 B = 5799.498846 C = 6309.998917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.031 3.969 3 C -0.009 4.009 4 C -0.088 4.088 5 C -0.116 4.116 6 C -0.135 4.135 7 C -0.128 4.128 8 C -0.138 4.138 9 C -0.089 4.089 10 C -0.112 4.112 11 N -0.248 5.248 12 N -0.652 5.652 13 C 0.280 3.720 14 H 0.028 0.972 15 C -0.152 4.152 16 C -0.605 4.605 17 H 0.024 0.976 18 C -0.014 4.014 19 N -0.938 5.938 20 Si 1.089 2.911 21 H -0.258 1.258 22 H -0.256 1.256 23 H -0.287 1.287 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.043 0.957 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.128 0.872 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.368 0.632 37 H 0.050 0.950 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 21.808 -8.764 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C -0.048 4.048 4 C -0.089 4.089 5 C -0.134 4.134 6 C -0.153 4.153 7 C -0.146 4.146 8 C -0.155 4.155 9 C -0.089 4.089 10 C -0.168 4.168 11 N -0.056 5.056 12 N -0.390 5.390 13 C 0.174 3.826 14 H 0.045 0.955 15 C -0.211 4.211 16 C -0.644 4.644 17 H 0.042 0.958 18 C -0.213 4.213 19 N -0.574 5.574 20 Si 0.911 3.089 21 H -0.184 1.184 22 H -0.180 1.180 23 H -0.213 1.213 24 H 0.090 0.910 25 H 0.116 0.884 26 H 0.062 0.938 27 H 0.130 0.870 28 H 0.102 0.898 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.157 0.843 32 H 0.146 0.854 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.206 0.794 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.132 20.039 -8.775 22.719 hybrid contribution -2.984 0.754 0.261 3.089 sum 3.147 20.793 -8.514 22.688 Atomic orbital electron populations 1.21111 0.92805 1.03465 1.02326 1.24584 0.94428 0.93157 1.04231 1.19307 1.00601 0.91261 0.93591 1.19731 0.95076 0.97954 0.96150 1.21312 0.99108 0.97435 0.95572 1.21417 0.98146 1.00856 0.94842 1.21414 0.94903 0.97589 1.00692 1.21265 1.00771 0.99092 0.94419 1.20011 0.96334 0.97691 0.94871 1.20795 0.97474 0.97910 1.00636 1.73490 1.28879 0.93024 1.10175 1.48215 1.05416 1.00197 1.85124 1.18519 0.92357 0.79520 0.92187 0.95451 1.22389 1.00133 0.99618 0.98942 1.22409 1.01255 0.99550 1.41176 0.95794 1.27102 1.08958 0.91727 0.93500 1.70944 1.09601 1.34156 1.42704 0.83463 0.70681 0.77064 0.77711 1.18371 1.18000 1.21318 0.91047 0.88378 0.93776 0.87008 0.89826 0.84022 0.83972 0.84325 0.85372 0.92580 0.91026 0.91187 0.79435 0.93155 0.94179 0.93479 0.93781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.34 71.24 0.67 -2.96 16 2 C 0.03 0.92 6.43 46.53 0.30 1.22 16 3 C -0.01 -0.20 5.20 29.10 0.15 -0.05 16 4 C -0.09 -2.06 5.12 -19.87 -0.10 -2.16 16 5 C -0.12 -2.27 9.69 22.27 0.22 -2.06 16 6 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 7 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 8 C -0.14 -3.07 9.68 22.27 0.22 -2.85 16 9 C -0.09 -2.24 5.88 -19.87 -0.12 -2.35 16 10 C -0.11 -2.88 9.24 71.24 0.66 -2.22 16 11 N -0.25 -9.49 10.60 -41.20 -0.44 -9.92 16 12 N -0.65 -28.91 5.93 -172.53 -1.02 -29.93 16 13 C 0.28 13.81 2.81 44.24 0.12 13.94 16 14 H 0.03 1.41 6.59 -2.39 -0.02 1.40 16 15 C -0.15 -6.79 9.12 71.98 0.66 -6.13 16 16 C -0.60 -34.81 9.09 25.60 0.23 -34.57 16 17 H 0.02 1.50 8.00 -2.91 -0.02 1.47 16 18 C -0.01 -0.84 5.42 84.66 0.46 -0.38 16 19 N -0.94 -58.83 13.70 21.45 0.29 -58.54 16 20 Si 1.09 50.68 25.40 68.60 1.74 52.42 16 21 H -0.26 -11.03 6.79 99.48 0.68 -10.35 16 22 H -0.26 -10.98 6.35 99.48 0.63 -10.35 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.10 1.92 8.09 -2.39 -0.02 1.90 16 26 H 0.04 1.32 6.61 -2.39 -0.02 1.31 16 27 H 0.11 1.90 8.04 -2.38 -0.02 1.88 16 28 H 0.08 2.00 6.17 -2.39 -0.01 1.99 16 29 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 30 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.06 1.76 7.61 -2.39 -0.02 1.74 16 34 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 35 H 0.07 1.75 6.23 -2.38 -0.01 1.74 16 36 H 0.37 16.08 6.41 -213.32 -1.37 14.71 16 37 H 0.05 2.18 4.56 -2.38 -0.01 2.17 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.25 16.08 8.72 -92.71 -0.81 15.27 16 Total: -1.00 -67.43 324.73 4.00 -63.44 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.49 Total: 27.56 kcal Atomic # 6 Polarization: -48.93 SS G_CDS: 3.91 Total: -45.02 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -1.17 Total: -98.39 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 1.74 Total: 52.42 kcal Total: -67.43 4.00 -63.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.714 kcal (2) G-P(sol) polarization free energy of solvation -67.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds