Wall clock time and date at job start Mon Mar 30 2020 06:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50702 * 120.00309 * 2 1 4 4 C 1.50694 * 109.47246 * 268.77920 * 3 2 1 5 5 C 1.38264 * 119.99937 * 94.68517 * 4 3 2 6 6 C 1.38210 * 119.99922 * 179.70045 * 5 4 3 7 7 C 1.38262 * 119.99992 * 0.02652 * 6 5 4 8 8 C 1.38212 * 120.00087 * 359.97088 * 7 6 5 9 9 C 1.38217 * 120.00050 * 274.41356 * 4 3 2 10 10 C 1.50698 * 119.99892 * 0.27336 * 9 4 3 11 11 N 1.28015 * 119.99943 * 180.02562 * 2 1 3 12 12 N 1.40095 * 120.00345 * 0.02562 * 11 2 1 13 13 C 1.46491 * 120.00381 * 179.97438 * 12 11 2 14 14 H 1.08996 * 109.47499 * 330.00196 * 13 12 11 15 15 C 1.53002 * 109.47133 * 90.00192 * 13 12 11 16 16 C 1.50704 * 109.47366 * 209.99779 * 13 12 11 17 17 H 1.08000 * 119.99649 * 0.02562 * 16 13 12 18 18 C 1.37876 * 119.99983 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00412 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99762 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46589 * 90.00602 * 20 18 16 22 22 H 1.48497 * 109.47253 * 210.00578 * 20 18 16 23 23 H 1.48498 * 109.47329 * 330.00764 * 20 18 16 24 24 H 1.09001 * 109.47439 * 95.27716 * 1 2 3 25 25 H 1.09001 * 109.47282 * 215.27701 * 1 2 3 26 26 H 1.09000 * 109.47478 * 335.27361 * 1 2 3 27 27 H 1.08997 * 109.47535 * 148.77483 * 3 2 1 28 28 H 1.09008 * 109.46825 * 28.77725 * 3 2 1 29 29 H 1.07998 * 120.00103 * 359.72049 * 5 4 3 30 30 H 1.08003 * 120.00073 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.00099 * 179.97438 * 7 6 5 32 32 H 1.08001 * 120.00025 * 179.97438 * 8 7 6 33 33 H 1.08993 * 109.47205 * 84.17957 * 10 9 4 34 34 H 1.08999 * 109.47205 * 204.18209 * 10 9 4 35 35 H 1.09008 * 109.46898 * 324.17763 * 10 9 4 36 36 H 0.97006 * 119.99465 * 359.97438 * 12 11 2 37 37 H 1.09000 * 109.47342 * 60.00263 * 15 13 12 38 38 H 1.09002 * 109.46993 * 180.02562 * 15 13 12 39 39 H 1.08997 * 109.47116 * 300.00010 * 15 13 12 40 40 H 0.97000 * 120.00209 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.5379 1.7250 -1.4204 5 6 1.6774 2.5944 -2.0649 6 6 1.9352 2.9844 -3.3655 7 6 3.0532 2.5046 -4.0224 8 6 3.9134 1.6355 -3.3782 9 6 3.6556 1.2454 -2.0771 10 6 4.5934 0.2977 -1.3747 11 7 2.1470 -1.1086 -0.0005 12 7 1.4466 -2.3219 -0.0016 13 6 2.1790 -3.5906 -0.0027 14 1 3.1314 -3.4599 -0.5164 15 6 2.4340 -4.0336 1.4394 16 6 1.3646 -4.6403 -0.7140 17 1 0.3982 -4.3875 -1.1246 18 6 1.8536 -5.9231 -0.8416 19 7 3.0307 -6.2308 -0.3421 20 14 0.8437 -7.2243 -1.7226 21 1 1.1815 -7.2178 -3.1687 22 1 1.1484 -8.5598 -1.1491 23 1 -0.6016 -6.9298 -1.5506 24 1 -0.3634 -0.0945 -1.0233 25 1 -0.3634 -0.8389 0.5935 26 1 -0.3634 0.9334 0.4298 27 1 3.2032 1.1804 0.5327 28 1 1.6621 2.0702 0.4948 29 1 0.8041 2.9691 -1.5518 30 1 1.2628 3.6632 -3.8691 31 1 3.2545 2.8090 -5.0389 32 1 4.7865 1.2605 -3.8914 33 1 4.2160 -0.7208 -1.4655 34 1 5.5819 0.3609 -1.8297 35 1 4.6607 0.5677 -0.3207 36 1 0.4765 -2.3219 -0.0016 37 1 1.4816 -4.1644 1.9531 38 1 2.9794 -4.9774 1.4385 39 1 3.0230 -3.2744 1.9539 40 1 3.3746 -7.1334 -0.4315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:42 Heat of formation + Delta-G solvation = 50.074972 kcal Electronic energy + Delta-G solvation = -19140.701671 eV Core-core repulsion = 16341.655597 eV Total energy + Delta-G solvation = -2799.046074 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45613 -37.07447 -34.61159 -32.94982 -32.16769 -31.01723 -28.81995 -27.33956 -26.71179 -25.63122 -25.08024 -21.93716 -20.91237 -20.22346 -18.62256 -16.66681 -16.17242 -15.71877 -15.08080 -14.88963 -14.86006 -14.19307 -13.74247 -13.31599 -12.97030 -12.81170 -12.63152 -12.46958 -12.14955 -12.00672 -11.87327 -11.61280 -11.35837 -11.27607 -11.00177 -10.83551 -10.73807 -10.72307 -10.28955 -10.18498 -9.95270 -9.31270 -8.94728 -8.62108 -8.47900 -8.32201 -6.78689 -6.10259 -4.17817 1.52082 1.56555 3.03493 3.25796 3.32142 3.34727 3.88150 4.06989 4.41573 4.97108 5.02080 5.14255 5.19579 5.22066 5.24995 5.49159 5.55103 5.64686 5.78444 5.82078 5.90356 5.94626 6.01408 6.12019 6.19363 6.24944 6.54964 6.59236 6.64119 6.66740 6.82264 6.91551 7.04861 7.14849 7.21328 7.23498 7.63042 7.85101 7.92954 8.24047 8.40953 8.92004 9.48582 9.53129 10.95543 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.004683 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.848114 B = 5977.034500 C = 6228.383786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.009 4.009 3 C -0.007 4.007 4 C -0.072 4.072 5 C -0.113 4.113 6 C -0.133 4.133 7 C -0.125 4.125 8 C -0.124 4.124 9 C -0.065 4.065 10 C -0.117 4.117 11 N -0.204 5.204 12 N -0.636 5.636 13 C 0.300 3.700 14 H 0.038 0.962 15 C -0.149 4.149 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.367 0.633 37 H 0.023 0.977 38 H 0.088 0.912 39 H 0.011 0.989 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 16.340 -2.158 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.202 4.202 3 C -0.046 4.046 4 C -0.073 4.073 5 C -0.131 4.131 6 C -0.151 4.151 7 C -0.143 4.143 8 C -0.142 4.142 9 C -0.065 4.065 10 C -0.173 4.173 11 N -0.015 5.015 12 N -0.374 5.374 13 C 0.198 3.802 14 H 0.056 0.944 15 C -0.209 4.209 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.204 0.796 37 H 0.043 0.957 38 H 0.106 0.894 39 H 0.030 0.970 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.232 15.578 -2.120 15.723 hybrid contribution -1.845 -0.609 -0.610 2.036 sum -1.613 14.969 -2.729 15.301 Atomic orbital electron populations 1.21011 0.94240 1.02124 1.01806 1.23699 0.92878 0.92929 1.10738 1.19152 1.00256 0.92486 0.92707 1.19706 0.94505 0.96728 0.96398 1.20987 0.98943 0.98190 0.94981 1.21019 0.97848 1.01083 0.95156 1.21049 0.95367 0.98343 0.99544 1.21033 1.00019 0.98592 0.94584 1.19879 0.95714 0.96782 0.94165 1.20887 0.96858 0.99573 0.99981 1.73409 1.28918 0.93238 1.05939 1.48907 1.05852 1.00243 1.82404 1.18414 0.92573 0.76656 0.92599 0.94386 1.22198 0.99020 1.01627 0.98014 1.21255 1.04473 0.94497 1.36453 0.92420 1.24847 0.95121 0.98198 0.95457 1.69892 1.17456 1.20256 1.44856 0.86464 0.80310 0.80695 0.79729 1.20590 1.21052 1.19935 0.91986 0.92205 0.91858 0.89751 0.90365 0.86345 0.86629 0.86643 0.86397 0.89429 0.92569 0.91201 0.79566 0.95742 0.89380 0.96979 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.35 36.00 0.34 -1.58 16 2 C -0.01 -0.15 6.43 -78.91 -0.51 -0.66 16 3 C -0.01 -0.09 5.21 -29.04 -0.15 -0.24 16 4 C -0.07 -1.00 5.12 -104.62 -0.54 -1.54 16 5 C -0.11 -1.40 9.68 -39.58 -0.38 -1.79 16 6 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 7 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 8 C -0.12 -1.66 9.68 -39.58 -0.38 -2.05 16 9 C -0.07 -0.95 5.88 -104.62 -0.62 -1.57 16 10 C -0.12 -1.71 9.10 36.00 0.33 -1.39 16 11 N -0.20 -4.11 10.29 35.60 0.37 -3.74 16 12 N -0.64 -14.27 5.93 -5.89 -0.03 -14.30 16 13 C 0.30 7.74 3.23 -69.08 -0.22 7.52 16 14 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.15 -3.72 9.29 37.16 0.35 -3.38 16 16 C -0.53 -14.40 8.74 -34.44 -0.30 -14.70 16 17 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 18 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 19 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 20 Si 0.90 21.06 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.91 6.61 -51.93 -0.34 0.57 16 26 H 0.06 0.73 7.97 -51.93 -0.41 0.32 16 27 H 0.08 1.14 6.22 -51.93 -0.32 0.81 16 28 H 0.08 0.85 7.89 -51.92 -0.41 0.44 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.09 1.56 7.44 -51.93 -0.39 1.17 16 34 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 35 H 0.07 0.98 6.25 -51.92 -0.32 0.65 16 36 H 0.37 7.82 6.43 -182.60 -1.17 6.65 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 329.34 15.07 4.96 4.96 Total: -1.00 -28.92 329.34 -9.11 -38.03 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.03 Total: 6.84 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -2.98 Total: -23.53 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.96 Total: -42.35 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.92 -9.11 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.108 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds