Wall clock time and date at job start Mon Mar 30 2020 06:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50702 * 120.00309 * 2 1 4 4 C 1.50694 * 109.47246 * 268.77920 * 3 2 1 5 5 C 1.38264 * 119.99937 * 94.68517 * 4 3 2 6 6 C 1.38210 * 119.99922 * 179.70045 * 5 4 3 7 7 C 1.38262 * 119.99992 * 0.02652 * 6 5 4 8 8 C 1.38212 * 120.00087 * 359.97088 * 7 6 5 9 9 C 1.38217 * 120.00050 * 274.41356 * 4 3 2 10 10 C 1.50698 * 119.99892 * 0.27336 * 9 4 3 11 11 N 1.28015 * 119.99943 * 180.02562 * 2 1 3 12 12 N 1.40095 * 120.00345 * 0.02562 * 11 2 1 13 13 C 1.46491 * 120.00381 * 179.97438 * 12 11 2 14 14 H 1.08996 * 109.47499 * 330.00196 * 13 12 11 15 15 C 1.53002 * 109.47133 * 90.00192 * 13 12 11 16 16 C 1.50704 * 109.47366 * 209.99779 * 13 12 11 17 17 H 1.08000 * 119.99649 * 0.02562 * 16 13 12 18 18 C 1.37876 * 119.99983 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00412 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99762 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46589 * 90.00602 * 20 18 16 22 22 H 1.48497 * 109.47253 * 210.00578 * 20 18 16 23 23 H 1.48498 * 109.47329 * 330.00764 * 20 18 16 24 24 H 1.09001 * 109.47439 * 95.27716 * 1 2 3 25 25 H 1.09001 * 109.47282 * 215.27701 * 1 2 3 26 26 H 1.09000 * 109.47478 * 335.27361 * 1 2 3 27 27 H 1.08997 * 109.47535 * 148.77483 * 3 2 1 28 28 H 1.09008 * 109.46825 * 28.77725 * 3 2 1 29 29 H 1.07998 * 120.00103 * 359.72049 * 5 4 3 30 30 H 1.08003 * 120.00073 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.00099 * 179.97438 * 7 6 5 32 32 H 1.08001 * 120.00025 * 179.97438 * 8 7 6 33 33 H 1.08993 * 109.47205 * 84.17957 * 10 9 4 34 34 H 1.08999 * 109.47205 * 204.18209 * 10 9 4 35 35 H 1.09008 * 109.46898 * 324.17763 * 10 9 4 36 36 H 0.97006 * 119.99465 * 359.97438 * 12 11 2 37 37 H 1.09000 * 109.47342 * 60.00263 * 15 13 12 38 38 H 1.09002 * 109.46993 * 180.02562 * 15 13 12 39 39 H 1.08997 * 109.47116 * 300.00010 * 15 13 12 40 40 H 0.97000 * 120.00209 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.5379 1.7250 -1.4204 5 6 1.6774 2.5944 -2.0649 6 6 1.9352 2.9844 -3.3655 7 6 3.0532 2.5046 -4.0224 8 6 3.9134 1.6355 -3.3782 9 6 3.6556 1.2454 -2.0771 10 6 4.5934 0.2977 -1.3747 11 7 2.1470 -1.1086 -0.0005 12 7 1.4466 -2.3219 -0.0016 13 6 2.1790 -3.5906 -0.0027 14 1 3.1314 -3.4599 -0.5164 15 6 2.4340 -4.0336 1.4394 16 6 1.3646 -4.6403 -0.7140 17 1 0.3982 -4.3875 -1.1246 18 6 1.8536 -5.9231 -0.8416 19 7 3.0307 -6.2308 -0.3421 20 14 0.8437 -7.2243 -1.7226 21 1 1.1815 -7.2178 -3.1687 22 1 1.1484 -8.5598 -1.1491 23 1 -0.6016 -6.9298 -1.5506 24 1 -0.3634 -0.0945 -1.0233 25 1 -0.3634 -0.8389 0.5935 26 1 -0.3634 0.9334 0.4298 27 1 3.2032 1.1804 0.5327 28 1 1.6621 2.0702 0.4948 29 1 0.8041 2.9691 -1.5518 30 1 1.2628 3.6632 -3.8691 31 1 3.2545 2.8090 -5.0389 32 1 4.7865 1.2605 -3.8914 33 1 4.2160 -0.7208 -1.4655 34 1 5.5819 0.3609 -1.8297 35 1 4.6607 0.5677 -0.3207 36 1 0.4765 -2.3219 -0.0016 37 1 1.4816 -4.1644 1.9531 38 1 2.9794 -4.9774 1.4385 39 1 3.0230 -3.2744 1.9539 40 1 3.3746 -7.1334 -0.4315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:42 Heat of formation + Delta-G solvation = 35.155808 kcal Electronic energy + Delta-G solvation = -19141.348614 eV Core-core repulsion = 16341.655597 eV Total energy + Delta-G solvation = -2799.693017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47888 -38.53789 -36.38864 -34.33465 -33.42122 -32.54035 -30.28775 -28.57587 -27.99949 -27.30117 -26.78703 -22.96944 -22.43590 -21.65575 -20.11313 -18.44947 -17.23178 -17.08003 -16.92992 -16.12846 -15.88004 -15.72996 -15.11032 -14.61006 -14.53763 -14.17015 -13.89215 -13.74862 -13.58848 -13.30116 -13.13969 -13.06827 -12.90894 -12.78391 -12.55328 -12.46638 -12.30080 -12.13747 -11.95477 -11.71377 -11.49898 -11.07882 -10.62907 -10.55683 -9.60926 -9.37441 -8.46666 -8.16399 -6.33565 0.51787 0.57941 1.41160 1.41475 1.52163 1.67270 2.29868 2.55798 2.96170 3.11544 3.96342 4.02123 4.07560 4.19391 4.27639 4.37270 4.47826 4.53111 4.68183 4.72933 4.77372 4.81300 4.89115 4.95859 4.99463 5.04092 5.07386 5.15773 5.21200 5.34057 5.43555 5.49218 5.62121 5.67175 5.69299 5.85272 5.87887 5.96935 6.23673 6.28127 6.49359 6.90894 7.38652 7.99105 8.87897 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.004683 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.848114 B = 5977.034500 C = 6228.383786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.022 3.978 3 C -0.008 4.008 4 C -0.088 4.088 5 C -0.114 4.114 6 C -0.134 4.134 7 C -0.128 4.128 8 C -0.140 4.140 9 C -0.091 4.091 10 C -0.109 4.109 11 N -0.250 5.250 12 N -0.653 5.653 13 C 0.311 3.689 14 H -0.004 1.004 15 C -0.134 4.134 16 C -0.546 4.546 17 H 0.056 0.944 18 C 0.019 3.981 19 N -0.914 5.914 20 Si 0.967 3.033 21 H -0.277 1.277 22 H -0.278 1.278 23 H -0.267 1.267 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.139 0.861 32 H 0.125 0.875 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.369 0.631 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.017 0.983 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.731 18.413 -2.873 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C -0.046 4.046 4 C -0.089 4.089 5 C -0.132 4.132 6 C -0.152 4.152 7 C -0.146 4.146 8 C -0.158 4.158 9 C -0.091 4.091 10 C -0.166 4.166 11 N -0.059 5.059 12 N -0.391 5.391 13 C 0.207 3.793 14 H 0.014 0.986 15 C -0.193 4.193 16 C -0.585 4.585 17 H 0.074 0.926 18 C -0.181 4.181 19 N -0.552 5.552 20 Si 0.792 3.208 21 H -0.203 1.203 22 H -0.204 1.204 23 H -0.191 1.191 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.133 0.867 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.157 0.843 32 H 0.143 0.857 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.207 0.793 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.036 0.964 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.570 17.668 -2.829 17.962 hybrid contribution -1.277 -1.011 -0.436 1.686 sum -2.847 16.657 -3.266 17.211 Atomic orbital electron populations 1.21100 0.92443 1.03818 1.02059 1.24580 0.94617 0.93052 1.04971 1.19316 1.00464 0.91565 0.93305 1.19781 0.94908 0.97764 0.96450 1.21325 0.99206 0.97320 0.95363 1.21431 0.97863 1.00847 0.95040 1.21403 0.95092 0.97498 1.00638 1.21255 1.00923 0.99255 0.94399 1.20005 0.96487 0.97550 0.95047 1.20757 0.97666 0.97650 1.00496 1.73514 1.29352 0.93325 1.09672 1.48426 1.05480 1.00307 1.84902 1.17973 0.90894 0.78304 0.92114 0.98628 1.22001 0.98789 1.00557 0.97960 1.21529 1.04609 0.95386 1.36984 0.92586 1.25685 0.96145 1.00216 0.96043 1.70018 1.18797 1.20799 1.45626 0.85421 0.78983 0.77996 0.78380 1.20326 1.20354 1.19143 0.91850 0.93155 0.87980 0.90179 0.86683 0.83678 0.83725 0.84303 0.85749 0.93218 0.91376 0.91064 0.79281 0.95404 0.91532 0.96419 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.35 71.23 0.67 -2.91 16 2 C 0.02 0.71 6.43 46.53 0.30 1.01 16 3 C -0.01 -0.19 5.21 29.10 0.15 -0.04 16 4 C -0.09 -2.28 5.12 -19.87 -0.10 -2.38 16 5 C -0.11 -2.44 9.68 22.27 0.22 -2.22 16 6 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 7 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 8 C -0.14 -3.63 9.68 22.27 0.22 -3.42 16 9 C -0.09 -2.62 5.88 -19.87 -0.12 -2.74 16 10 C -0.11 -3.35 9.10 71.24 0.65 -2.70 16 11 N -0.25 -10.28 10.29 -41.20 -0.42 -10.71 16 12 N -0.65 -30.20 5.93 -172.53 -1.02 -31.23 16 13 C 0.31 16.79 3.23 44.25 0.14 16.93 16 14 H 0.00 -0.26 8.14 -2.39 -0.02 -0.27 16 15 C -0.13 -6.91 9.29 71.98 0.67 -6.24 16 16 C -0.55 -30.61 8.74 25.60 0.22 -30.38 16 17 H 0.06 3.08 7.79 -2.91 -0.02 3.05 16 18 C 0.02 1.06 5.30 84.65 0.45 1.51 16 19 N -0.91 -52.76 11.32 21.45 0.24 -52.52 16 20 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.46 6.61 -2.39 -0.02 1.45 16 26 H 0.10 1.92 7.97 -2.39 -0.02 1.90 16 27 H 0.08 2.08 6.22 -2.39 -0.01 2.07 16 28 H 0.11 2.02 7.89 -2.38 -0.02 2.01 16 29 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.05 1.90 7.44 -2.39 -0.02 1.88 16 34 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 35 H 0.07 2.08 6.25 -2.38 -0.01 2.06 16 36 H 0.37 16.06 6.43 -213.32 -1.37 14.69 16 37 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -64.56 329.34 4.38 -60.17 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.35 Total: 27.39 kcal Atomic # 6 Polarization: -42.53 SS G_CDS: 3.91 Total: -38.62 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -1.20 Total: -94.45 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -64.56 4.38 -60.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.331 kcal (2) G-P(sol) polarization free energy of solvation -64.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds