Wall clock time and date at job start Mon Mar 30 2020 06:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29744 * 119.99922 * 2 1 4 4 N 1.40100 * 120.00251 * 0.02562 * 3 2 1 5 5 C 1.46496 * 120.00144 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47565 * 329.99152 * 5 4 3 7 7 C 1.52998 * 109.47312 * 89.99848 * 5 4 3 8 8 C 1.50704 * 109.47088 * 209.99790 * 5 4 3 9 9 H 1.08008 * 119.99912 * 359.97438 * 8 5 4 10 10 C 1.37872 * 120.00354 * 179.97438 * 8 5 4 11 11 N 1.31519 * 119.99891 * 359.97438 * 10 8 5 12 12 Si 1.86801 * 120.00201 * 179.97438 * 10 8 5 13 13 H 1.48506 * 109.46809 * 90.00079 * 12 10 8 14 14 H 1.48495 * 109.47103 * 209.99958 * 12 10 8 15 15 H 1.48494 * 109.47344 * 330.00456 * 12 10 8 16 16 C 1.47494 * 120.00452 * 180.02562 * 2 1 3 17 17 C 1.39705 * 120.15165 * 359.71964 * 16 2 1 18 18 C 1.37912 * 119.84163 * 179.74520 * 17 16 2 19 19 C 1.38396 * 120.15468 * 0.53419 * 18 17 16 20 20 C 1.50700 * 119.84188 * 179.69992 * 19 18 17 21 21 C 1.38351 * 120.31640 * 359.72032 * 19 18 17 22 22 C 1.50693 * 119.92324 * 179.97438 * 21 19 18 23 23 C 1.37959 * 120.15137 * 0.02562 * 21 19 18 24 24 H 1.08999 * 109.47280 * 89.99742 * 1 2 3 25 25 H 1.08997 * 109.47027 * 209.99702 * 1 2 3 26 26 H 1.09000 * 109.47497 * 329.99936 * 1 2 3 27 27 H 0.96999 * 119.99770 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.46785 * 299.99941 * 7 5 4 29 29 H 1.09001 * 109.47466 * 59.99918 * 7 5 4 30 30 H 1.09002 * 109.47171 * 179.97438 * 7 5 4 31 31 H 0.96997 * 120.00135 * 179.97438 * 11 10 8 32 32 H 1.08000 * 120.07765 * 0.02562 * 17 16 2 33 33 H 1.07997 * 119.92299 * 180.23943 * 18 17 16 34 34 H 1.09005 * 109.46948 * 270.02288 * 20 19 18 35 35 H 1.08995 * 109.46967 * 30.02262 * 20 19 18 36 36 H 1.09002 * 109.46909 * 150.02399 * 20 19 18 37 37 H 1.09006 * 109.46757 * 270.02516 * 22 21 19 38 38 H 1.09001 * 109.47241 * 30.02095 * 22 21 19 39 39 H 1.08998 * 109.47029 * 150.02417 * 22 21 19 40 40 H 1.07998 * 120.07442 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1556 1.1236 0.0000 4 7 1.4552 2.3369 0.0005 5 6 2.1877 3.6056 0.0011 6 1 3.1400 3.4752 0.5150 7 6 2.4427 4.0480 -1.4412 8 6 1.3732 4.6556 0.7120 9 1 0.4063 4.4032 1.1219 10 6 1.8621 5.9384 0.8390 11 7 3.0396 6.2457 0.3403 12 14 0.8522 7.2401 1.7195 13 1 1.1899 7.2342 3.1656 14 1 1.1570 8.5752 1.1455 15 1 -0.5930 6.9455 1.5475 16 6 2.2445 -1.2773 -0.0006 17 6 1.5493 -2.4890 0.0048 18 6 2.2454 -3.6796 -0.0011 19 6 3.6293 -3.6758 -0.0011 20 6 4.3828 -4.9809 -0.0007 21 6 4.3244 -2.4795 -0.0011 22 6 5.8313 -2.4857 -0.0006 23 6 3.6410 -1.2811 -0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 0.4852 2.3369 0.0005 28 1 3.0318 3.2885 -1.9552 29 1 1.4904 4.1785 -1.9550 30 1 2.9873 4.9922 -1.4407 31 1 3.3835 7.1483 0.4293 32 1 0.4693 -2.4935 0.0090 33 1 1.7093 -4.6171 -0.0009 34 1 4.5642 -5.2954 1.0271 35 1 3.7939 -5.7405 -0.5146 36 1 5.3354 -4.8505 -0.5143 37 1 6.1942 -2.4875 1.0273 38 1 6.1912 -3.3771 -0.5144 39 1 6.1984 -1.5971 -0.5141 40 1 4.1849 -0.3480 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771887183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:46 Heat of formation + Delta-G solvation = 48.686143 kcal Electronic energy + Delta-G solvation = -18662.992207 eV Core-core repulsion = 15863.885909 eV Total energy + Delta-G solvation = -2799.106298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.43623 -36.97245 -34.65634 -33.06941 -32.04134 -31.14267 -28.88430 -27.86205 -26.36317 -25.87834 -25.17775 -21.97964 -21.44057 -20.17040 -18.64395 -17.05934 -15.89425 -15.70904 -15.02328 -14.88698 -14.29801 -14.19887 -13.84485 -13.63404 -13.04985 -12.94763 -12.77153 -12.60493 -12.40803 -12.08114 -11.86853 -11.71783 -11.65391 -11.30563 -11.06711 -10.89641 -10.79803 -10.73523 -10.39236 -10.23468 -10.15443 -9.43175 -9.02610 -8.62401 -8.52115 -8.39445 -6.70218 -6.14719 -4.23221 1.27060 1.62192 3.00701 3.23521 3.29867 3.32183 3.83679 4.13050 4.36059 4.87146 4.90884 5.01493 5.15142 5.17604 5.29034 5.45712 5.52075 5.54014 5.56229 5.70013 5.81469 5.83943 5.85803 5.93223 5.96158 6.23877 6.30183 6.39781 6.57389 6.75173 6.79599 6.87650 6.99865 7.09368 7.15890 7.23955 7.57102 7.77420 7.85496 8.14713 8.30049 8.84450 9.33992 9.43760 10.91094 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033384 B = 0.003813 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.515647 B = 7342.163737 C = 7830.607461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.008 3.992 3 N -0.192 5.192 4 N -0.620 5.620 5 C 0.296 3.704 6 H 0.041 0.959 7 C -0.150 4.150 8 C -0.531 4.531 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.886 5.886 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.002 3.998 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.102 4.102 20 C -0.113 4.113 21 C -0.087 4.087 22 C -0.116 4.116 23 C -0.097 4.097 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.370 0.630 28 H 0.012 0.988 29 H 0.025 0.975 30 H 0.090 0.910 31 H 0.265 0.735 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 -18.277 -1.282 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.179 4.179 3 N -0.005 5.005 4 N -0.358 5.358 5 C 0.194 3.806 6 H 0.059 0.941 7 C -0.209 4.209 8 C -0.570 4.570 9 H 0.077 0.923 10 C -0.136 4.136 11 N -0.523 5.523 12 Si 0.730 3.270 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.000 4.000 17 C -0.140 4.140 18 C -0.135 4.135 19 C -0.103 4.103 20 C -0.170 4.170 21 C -0.087 4.087 22 C -0.173 4.173 23 C -0.117 4.117 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.208 0.792 28 H 0.031 0.969 29 H 0.044 0.956 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.365 -17.450 -1.304 17.552 hybrid contribution -1.841 0.661 0.454 2.009 sum -0.476 -16.789 -0.850 16.817 Atomic orbital electron populations 1.20964 0.93421 1.02628 1.02041 1.22301 0.92702 0.91010 1.11876 1.74054 1.28424 0.93162 1.04909 1.49087 1.06272 1.00349 1.80061 1.18540 0.92760 0.76340 0.92975 0.94082 1.22199 0.99213 1.01783 0.97708 1.21233 1.04530 0.94467 1.36790 0.92258 1.24857 0.95140 0.98220 0.95389 1.69891 1.17401 1.20371 1.44674 0.86425 0.80258 0.80590 0.79708 1.20515 1.21004 1.19877 1.18255 0.92475 0.90550 0.98752 1.21141 0.99651 0.91405 1.01838 1.20792 0.93398 0.97566 1.01758 1.19714 0.93726 0.94592 1.02302 1.20812 1.00007 0.94219 1.01925 1.19659 0.95809 0.92498 1.00752 1.20847 0.91567 1.02643 1.02200 1.21244 0.93457 0.97797 0.99246 0.91639 0.91283 0.91871 0.79218 0.96851 0.95552 0.89156 0.92550 0.85948 0.86430 0.91581 0.92035 0.91417 0.91342 0.91480 0.91498 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.04 36.00 0.33 -1.61 16 2 C 0.01 0.15 7.10 -79.71 -0.57 -0.42 16 3 N -0.19 -4.05 10.61 35.11 0.37 -3.68 16 4 N -0.62 -14.03 5.95 -5.88 -0.04 -14.06 16 5 C 0.30 7.64 3.23 -69.08 -0.22 7.42 16 6 H 0.04 1.18 8.14 -51.93 -0.42 0.75 16 7 C -0.15 -3.73 9.29 37.16 0.35 -3.39 16 8 C -0.53 -14.38 8.74 -34.44 -0.30 -14.68 16 9 H 0.06 1.57 7.79 -52.48 -0.41 1.16 16 10 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 11 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 12 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 C 0.00 0.03 5.87 -105.05 -0.62 -0.59 16 17 C -0.12 -1.59 9.37 -39.15 -0.37 -1.96 16 18 C -0.12 -1.39 9.68 -39.64 -0.38 -1.77 16 19 C -0.10 -1.23 5.89 -104.52 -0.62 -1.84 16 20 C -0.11 -0.99 9.59 36.01 0.35 -0.65 16 21 C -0.09 -1.17 5.87 -104.69 -0.61 -1.78 16 22 C -0.12 -1.24 9.59 36.00 0.35 -0.90 16 23 C -0.10 -1.54 9.23 -39.16 -0.36 -1.90 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.84 6.47 -51.93 -0.34 0.51 16 26 H 0.06 0.98 6.35 -51.93 -0.33 0.65 16 27 H 0.37 7.79 6.36 -182.60 -1.16 6.63 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.12 1.38 6.35 -52.49 -0.33 1.05 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.07 0.54 5.93 -51.93 -0.31 0.23 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.59 5.93 -51.93 -0.31 0.29 16 39 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.13 2.24 7.55 -52.49 -0.40 1.85 16 LS Contribution 326.72 15.07 4.92 4.92 Total: -1.00 -28.89 326.72 -8.74 -37.63 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.83 Total: 5.86 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -2.78 Total: -22.35 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.97 Total: -41.89 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.89 -8.74 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771887183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.321 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds