Wall clock time and date at job start Mon Mar 30 2020 06:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29744 * 119.99922 * 2 1 4 4 N 1.40100 * 120.00251 * 0.02562 * 3 2 1 5 5 C 1.46496 * 120.00144 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47565 * 329.99152 * 5 4 3 7 7 C 1.52998 * 109.47312 * 89.99848 * 5 4 3 8 8 C 1.50704 * 109.47088 * 209.99790 * 5 4 3 9 9 H 1.08008 * 119.99912 * 359.97438 * 8 5 4 10 10 C 1.37872 * 120.00354 * 179.97438 * 8 5 4 11 11 N 1.31519 * 119.99891 * 359.97438 * 10 8 5 12 12 Si 1.86801 * 120.00201 * 179.97438 * 10 8 5 13 13 H 1.48506 * 109.46809 * 90.00079 * 12 10 8 14 14 H 1.48495 * 109.47103 * 209.99958 * 12 10 8 15 15 H 1.48494 * 109.47344 * 330.00456 * 12 10 8 16 16 C 1.47494 * 120.00452 * 180.02562 * 2 1 3 17 17 C 1.39705 * 120.15165 * 359.71964 * 16 2 1 18 18 C 1.37912 * 119.84163 * 179.74520 * 17 16 2 19 19 C 1.38396 * 120.15468 * 0.53419 * 18 17 16 20 20 C 1.50700 * 119.84188 * 179.69992 * 19 18 17 21 21 C 1.38351 * 120.31640 * 359.72032 * 19 18 17 22 22 C 1.50693 * 119.92324 * 179.97438 * 21 19 18 23 23 C 1.37959 * 120.15137 * 0.02562 * 21 19 18 24 24 H 1.08999 * 109.47280 * 89.99742 * 1 2 3 25 25 H 1.08997 * 109.47027 * 209.99702 * 1 2 3 26 26 H 1.09000 * 109.47497 * 329.99936 * 1 2 3 27 27 H 0.96999 * 119.99770 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.46785 * 299.99941 * 7 5 4 29 29 H 1.09001 * 109.47466 * 59.99918 * 7 5 4 30 30 H 1.09002 * 109.47171 * 179.97438 * 7 5 4 31 31 H 0.96997 * 120.00135 * 179.97438 * 11 10 8 32 32 H 1.08000 * 120.07765 * 0.02562 * 17 16 2 33 33 H 1.07997 * 119.92299 * 180.23943 * 18 17 16 34 34 H 1.09005 * 109.46948 * 270.02288 * 20 19 18 35 35 H 1.08995 * 109.46967 * 30.02262 * 20 19 18 36 36 H 1.09002 * 109.46909 * 150.02399 * 20 19 18 37 37 H 1.09006 * 109.46757 * 270.02516 * 22 21 19 38 38 H 1.09001 * 109.47241 * 30.02095 * 22 21 19 39 39 H 1.08998 * 109.47029 * 150.02417 * 22 21 19 40 40 H 1.07998 * 120.07442 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1556 1.1236 0.0000 4 7 1.4552 2.3369 0.0005 5 6 2.1877 3.6056 0.0011 6 1 3.1400 3.4752 0.5150 7 6 2.4427 4.0480 -1.4412 8 6 1.3732 4.6556 0.7120 9 1 0.4063 4.4032 1.1219 10 6 1.8621 5.9384 0.8390 11 7 3.0396 6.2457 0.3403 12 14 0.8522 7.2401 1.7195 13 1 1.1899 7.2342 3.1656 14 1 1.1570 8.5752 1.1455 15 1 -0.5930 6.9455 1.5475 16 6 2.2445 -1.2773 -0.0006 17 6 1.5493 -2.4890 0.0048 18 6 2.2454 -3.6796 -0.0011 19 6 3.6293 -3.6758 -0.0011 20 6 4.3828 -4.9809 -0.0007 21 6 4.3244 -2.4795 -0.0011 22 6 5.8313 -2.4857 -0.0006 23 6 3.6410 -1.2811 -0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 0.4852 2.3369 0.0005 28 1 3.0318 3.2885 -1.9552 29 1 1.4904 4.1785 -1.9550 30 1 2.9873 4.9922 -1.4407 31 1 3.3835 7.1483 0.4293 32 1 0.4693 -2.4935 0.0090 33 1 1.7093 -4.6171 -0.0009 34 1 4.5642 -5.2954 1.0271 35 1 3.7939 -5.7405 -0.5146 36 1 5.3354 -4.8505 -0.5143 37 1 6.1942 -2.4875 1.0273 38 1 6.1912 -3.3771 -0.5144 39 1 6.1984 -1.5971 -0.5141 40 1 4.1849 -0.3480 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771887183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:46 Heat of formation + Delta-G solvation = 33.316952 kcal Electronic energy + Delta-G solvation = -18663.658665 eV Core-core repulsion = 15863.885909 eV Total energy + Delta-G solvation = -2799.772756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.50991 -38.46910 -36.38794 -34.46014 -33.24438 -32.62167 -30.35479 -29.01292 -27.76041 -27.24719 -26.89140 -23.15462 -22.75750 -21.81900 -20.04427 -18.70043 -17.49964 -17.02216 -16.65923 -16.05788 -15.63728 -15.33394 -15.16859 -14.82178 -14.57244 -14.24300 -14.05948 -13.84785 -13.53422 -13.33705 -13.19897 -12.92664 -12.85181 -12.78108 -12.66658 -12.63909 -12.31533 -12.14060 -11.88733 -11.82429 -11.75174 -11.14128 -10.77010 -10.60179 -9.73522 -9.52175 -8.31773 -8.16893 -6.37506 0.11820 0.56761 1.41148 1.41859 1.52662 1.71869 2.19887 2.47290 3.01196 3.08866 3.70947 3.96858 4.07644 4.20255 4.28527 4.38983 4.45763 4.51326 4.67171 4.70457 4.76241 4.84964 4.91534 4.93905 4.94863 5.06042 5.07990 5.09486 5.15752 5.23920 5.34398 5.45728 5.49431 5.65238 5.67954 5.79683 5.83483 5.91547 6.18700 6.20472 6.40775 6.82689 7.34306 7.79910 8.85399 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033384 B = 0.003813 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.515647 B = 7342.163737 C = 7830.607461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.041 3.959 3 N -0.250 5.250 4 N -0.639 5.639 5 C 0.307 3.693 6 H -0.003 1.003 7 C -0.135 4.135 8 C -0.549 4.549 9 H 0.060 0.940 10 C 0.019 3.981 11 N -0.915 5.915 12 Si 0.972 3.028 13 H -0.276 1.276 14 H -0.278 1.278 15 H -0.265 1.265 16 C -0.038 4.038 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.093 4.093 20 C -0.113 4.113 21 C -0.100 4.100 22 C -0.116 4.116 23 C -0.117 4.117 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.374 0.626 28 H 0.015 0.985 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.267 0.733 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 -21.322 -1.027 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 N -0.061 5.061 4 N -0.377 5.377 5 C 0.203 3.797 6 H 0.015 0.985 7 C -0.194 4.194 8 C -0.588 4.588 9 H 0.079 0.921 10 C -0.182 4.182 11 N -0.553 5.553 12 Si 0.796 3.204 13 H -0.202 1.202 14 H -0.204 1.204 15 H -0.190 1.190 16 C -0.040 4.040 17 C -0.131 4.131 18 C -0.135 4.135 19 C -0.095 4.095 20 C -0.170 4.170 21 C -0.100 4.100 22 C -0.172 4.172 23 C -0.138 4.138 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.213 0.787 28 H 0.034 0.966 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.165 0.835 33 H 0.172 0.828 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.042 -20.515 -1.053 20.542 hybrid contribution -1.368 1.242 0.368 1.884 sum -1.326 -19.272 -0.686 19.330 Atomic orbital electron populations 1.21072 0.91061 1.03709 1.03343 1.23107 0.94712 0.90888 1.06068 1.74106 1.29119 0.93474 1.09396 1.48518 1.05900 1.00085 1.83216 1.18098 0.91092 0.78005 0.92474 0.98504 1.22009 0.99022 1.00648 0.97719 1.21518 1.04752 0.95265 1.37277 0.92144 1.25736 0.96184 1.00285 0.95971 1.70022 1.18823 1.20935 1.45513 0.85351 0.78940 0.77744 0.78334 1.20191 1.20356 1.18964 1.18418 0.92660 0.90798 1.02174 1.21430 1.00902 0.90617 1.00102 1.21252 0.93544 0.98431 1.00261 1.20212 0.94332 0.95402 0.99510 1.20908 1.00305 0.92594 1.03151 1.19952 0.97184 0.92220 1.00685 1.20893 0.90028 1.03378 1.02884 1.21226 0.93927 0.97905 1.00712 0.90073 0.88069 0.92807 0.78734 0.96639 0.95065 0.91182 0.92350 0.83538 0.82821 0.90282 0.90098 0.90525 0.90631 0.89058 0.92494 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.04 71.23 0.64 -3.08 16 2 C 0.04 1.49 7.10 45.31 0.32 1.81 16 3 N -0.25 -11.17 10.61 -42.82 -0.45 -11.62 16 4 N -0.64 -30.43 5.95 -172.53 -1.03 -31.45 16 5 C 0.31 16.82 3.23 44.25 0.14 16.96 16 6 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 7 C -0.13 -7.07 9.29 71.98 0.67 -6.40 16 8 C -0.55 -30.80 8.74 25.60 0.22 -30.58 16 9 H 0.06 3.28 7.79 -2.91 -0.02 3.26 16 10 C 0.02 1.02 5.30 84.65 0.45 1.47 16 11 N -0.91 -52.90 11.32 21.45 0.24 -52.66 16 12 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 13 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 16 C -0.04 -1.21 5.87 -20.14 -0.12 -1.33 16 17 C -0.11 -2.60 9.37 22.55 0.21 -2.39 16 18 C -0.12 -2.31 9.68 22.23 0.22 -2.09 16 19 C -0.09 -1.94 5.89 -19.80 -0.12 -2.05 16 20 C -0.11 -1.48 9.59 71.24 0.68 -0.80 16 21 C -0.10 -2.58 5.87 -19.91 -0.12 -2.70 16 22 C -0.12 -2.36 9.59 71.23 0.68 -1.67 16 23 C -0.12 -3.83 9.23 22.55 0.21 -3.62 16 24 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.10 2.16 6.47 -2.39 -0.02 2.15 16 26 H 0.05 1.64 6.35 -2.39 -0.02 1.63 16 27 H 0.37 16.39 6.36 -213.32 -1.36 15.04 16 28 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 31 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.15 2.67 6.35 -2.91 -0.02 2.65 16 33 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 34 H 0.08 0.90 8.14 -2.38 -0.02 0.89 16 35 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 36 H 0.08 0.89 5.93 -2.39 -0.01 0.88 16 37 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.09 1.38 5.93 -2.39 -0.01 1.37 16 39 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 40 H 0.10 3.84 7.55 -2.91 -0.02 3.82 16 Total: -1.00 -66.04 326.72 4.57 -61.48 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.32 Total: 25.45 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 4.10 Total: -36.47 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -1.24 Total: -95.73 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -66.04 4.57 -61.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771887183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.793 kcal (2) G-P(sol) polarization free energy of solvation -66.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds