Wall clock time and date at job start Mon Mar 30 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38396 * 119.83728 * 2 1 4 4 C 1.37906 * 120.15329 * 179.76593 * 3 2 1 5 5 C 1.50701 * 120.08067 * 180.23636 * 4 3 2 6 6 C 1.39702 * 119.84239 * 0.46595 * 4 3 2 7 7 C 1.47497 * 120.15621 * 179.78992 * 6 4 3 8 8 N 1.29742 * 120.00026 * 354.20323 * 7 6 4 9 9 N 1.40102 * 120.00118 * 179.97438 * 8 7 6 10 10 C 1.46494 * 120.00166 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47221 * 329.99983 * 10 9 8 12 12 C 1.53000 * 109.47318 * 90.00231 * 10 9 8 13 13 C 1.50706 * 109.47105 * 210.00420 * 10 9 8 14 14 H 1.07999 * 119.99847 * 359.97438 * 13 10 9 15 15 C 1.37876 * 119.99705 * 180.27765 * 13 10 9 16 16 N 1.31510 * 120.00053 * 359.72016 * 15 13 10 17 17 Si 1.86801 * 119.99680 * 179.72532 * 15 13 10 18 18 H 1.48493 * 109.47085 * 89.99934 * 17 15 13 19 19 H 1.48504 * 109.46881 * 209.99819 * 17 15 13 20 20 H 1.48495 * 109.46984 * 329.99238 * 17 15 13 21 21 C 1.39658 * 119.68868 * 359.51598 * 6 4 3 22 22 C 1.37959 * 119.84231 * 0.25535 * 21 6 4 23 23 C 1.50699 * 119.92628 * 179.97438 * 22 21 6 24 24 H 1.08995 * 109.46747 * 270.01506 * 1 2 3 25 25 H 1.08998 * 109.47495 * 30.02101 * 1 2 3 26 26 H 1.09002 * 109.46984 * 150.02122 * 1 2 3 27 27 H 1.08003 * 119.92381 * 0.02562 * 3 2 1 28 28 H 1.08996 * 109.47034 * 263.24975 * 5 4 3 29 29 H 1.09003 * 109.47040 * 23.24812 * 5 4 3 30 30 H 1.09005 * 109.47396 * 143.25244 * 5 4 3 31 31 H 1.08006 * 119.99955 * 174.20700 * 7 6 4 32 32 H 0.96999 * 119.99794 * 0.02562 * 9 8 7 33 33 H 1.08994 * 109.46814 * 59.99803 * 12 10 9 34 34 H 1.08994 * 109.47230 * 180.02562 * 12 10 9 35 35 H 1.09003 * 109.46872 * 300.00593 * 12 10 9 36 36 H 0.97006 * 120.00096 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.08063 * 180.22285 * 21 6 4 38 38 H 1.08998 * 109.47589 * 89.98941 * 23 22 21 39 39 H 1.08995 * 109.47380 * 209.99808 * 23 22 21 40 40 H 1.09011 * 109.46540 * 329.99399 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1956 1.2005 0.0000 4 6 3.5747 1.2081 0.0049 5 6 4.3228 2.5163 0.0102 6 6 4.2766 0.0002 0.0000 7 6 5.7515 0.0003 0.0004 8 7 6.4002 1.1187 -0.1081 9 7 7.8012 1.1188 -0.1071 10 6 8.5337 2.3816 -0.2290 11 1 7.9450 3.0881 -0.8142 12 6 8.7877 2.9605 1.1643 13 6 9.8510 2.1338 -0.9179 14 1 10.1162 1.1354 -1.2329 15 6 10.7202 3.1807 -1.1403 16 7 10.3974 4.3963 -0.7563 17 14 12.3564 2.8722 -1.9873 18 1 12.1903 3.0241 -3.4551 19 1 13.3593 3.8522 -1.4985 20 1 12.8202 1.4951 -1.6814 21 6 3.5751 -1.2074 0.0004 22 6 2.1955 -1.2000 0.0003 23 6 1.4367 -2.5020 0.0002 24 1 -0.3632 0.0003 1.0276 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6517 2.1336 0.0004 28 1 4.6116 2.7738 -1.0087 29 1 3.6821 3.2996 0.4153 30 1 5.2159 2.4217 0.6281 31 1 6.2916 -0.9306 0.0911 32 1 8.2862 0.2827 -0.0256 33 1 9.3764 2.2541 1.7494 34 1 9.3323 3.9003 1.0735 35 1 7.8349 3.1397 1.6625 36 1 11.0089 5.1329 -0.9131 37 1 4.1113 -2.1449 0.0002 38 1 1.2538 -2.8161 1.0278 39 1 0.4848 -2.3677 -0.5136 40 1 2.0227 -3.2640 -0.5138 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771887938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:51 Heat of formation + Delta-G solvation = 53.286648 kcal Electronic energy + Delta-G solvation = -18676.596526 eV Core-core repulsion = 15877.689721 eV Total energy + Delta-G solvation = -2798.906805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.54740 -36.58787 -34.69409 -33.32945 -32.30304 -30.95513 -29.14268 -28.07556 -26.19553 -25.25207 -24.62774 -22.07779 -21.43507 -20.25388 -19.05419 -16.92949 -16.27759 -15.34104 -15.00048 -14.79047 -14.59629 -14.33558 -13.70423 -13.26255 -12.95221 -12.84441 -12.65436 -12.52129 -12.49367 -12.22776 -11.92544 -11.75314 -11.42844 -11.19180 -11.07942 -10.93349 -10.82784 -10.70676 -10.49279 -10.25119 -10.20587 -9.21688 -8.97530 -8.63289 -8.47152 -8.21454 -6.74615 -6.15334 -4.23663 1.28598 1.61607 3.04318 3.23296 3.29735 3.32021 3.80516 4.10708 4.35350 4.88301 4.93828 5.08788 5.12300 5.17248 5.27920 5.37736 5.46194 5.62484 5.67126 5.77571 5.82399 5.85282 6.02359 6.03605 6.24422 6.34409 6.38763 6.47233 6.71240 6.75570 6.80173 6.97247 7.04151 7.06087 7.13894 7.30230 7.56022 7.75976 7.85236 8.13659 8.29609 8.84166 9.31549 9.43338 10.90421 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041738 B = 0.003607 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.689225 B = 7761.720884 C = 8122.664160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.120 4.120 4 C -0.063 4.063 5 C -0.113 4.113 6 C -0.015 4.015 7 C -0.016 4.016 8 N -0.185 5.185 9 N -0.627 5.627 10 C 0.297 3.703 11 H 0.042 0.958 12 C -0.151 4.151 13 C -0.531 4.531 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.902 3.098 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.274 1.274 21 C -0.106 4.106 22 C -0.098 4.098 23 C -0.112 4.112 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.367 0.633 33 H 0.025 0.975 34 H 0.090 0.910 35 H 0.012 0.988 36 H 0.265 0.735 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.256 -9.076 2.254 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.138 4.138 4 C -0.066 4.066 5 C -0.170 4.170 6 C -0.017 4.017 7 C -0.222 4.222 8 N 0.002 4.998 9 N -0.363 5.363 10 C 0.195 3.805 11 H 0.060 0.940 12 C -0.210 4.210 13 C -0.570 4.570 14 H 0.078 0.922 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.730 3.270 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.127 4.127 22 C -0.098 4.098 23 C -0.169 4.169 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.203 0.797 33 H 0.045 0.955 34 H 0.109 0.891 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.138 0.862 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.098 -7.699 2.139 17.972 hybrid contribution 1.452 -1.305 -0.309 1.977 sum -14.646 -9.004 1.830 17.289 Atomic orbital electron populations 1.20813 0.91826 1.02417 1.01908 1.19687 0.95511 0.92666 1.01791 1.20811 0.93464 0.97172 1.02336 1.20128 0.93161 0.95387 0.97876 1.21092 1.00466 0.91963 1.03477 1.18314 0.90551 0.92592 1.00213 1.23525 0.92671 0.94223 1.11832 1.74265 0.95601 1.25670 1.04312 1.49209 0.97091 1.10297 1.79731 1.18525 0.89514 0.79507 0.92958 0.94025 1.22210 0.98129 1.02912 0.97758 1.21244 1.01857 0.95009 1.38914 0.92227 1.24854 0.98451 0.94871 0.95435 1.69886 1.36838 0.99486 1.46151 0.86429 0.82835 0.78075 0.79668 1.20516 1.21013 1.19893 1.20931 0.93158 0.96966 1.01646 1.19487 0.93386 0.94595 1.02350 1.20799 0.99852 0.94293 1.01934 0.91579 0.91942 0.91494 0.86393 0.91046 0.93428 0.88312 0.88206 0.79695 0.95549 0.89119 0.96892 0.92550 0.86180 0.91589 0.91492 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.59 36.01 0.35 -0.67 16 2 C -0.10 -1.17 5.89 -104.52 -0.62 -1.78 16 3 C -0.12 -1.63 9.31 -39.64 -0.37 -2.00 16 4 C -0.06 -1.00 5.92 -104.20 -0.62 -1.61 16 5 C -0.11 -1.88 8.61 36.01 0.31 -1.57 16 6 C -0.01 -0.23 5.87 -105.05 -0.62 -0.85 16 7 C -0.02 -0.28 10.70 -14.66 -0.16 -0.43 16 8 N -0.19 -3.76 7.43 32.16 0.24 -3.52 16 9 N -0.63 -13.85 6.10 -5.88 -0.04 -13.89 16 10 C 0.30 7.52 3.24 -69.08 -0.22 7.30 16 11 H 0.04 1.17 8.14 -51.93 -0.42 0.74 16 12 C -0.15 -3.69 9.29 37.16 0.35 -3.35 16 13 C -0.53 -14.25 8.74 -34.44 -0.30 -14.55 16 14 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 15 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 16 N -0.89 -24.60 11.31 55.43 0.63 -23.97 16 17 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 C -0.11 -1.44 9.44 -39.15 -0.37 -1.81 16 22 C -0.10 -1.20 5.87 -104.69 -0.61 -1.81 16 23 C -0.11 -1.00 9.60 36.01 0.35 -0.66 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.07 0.52 5.93 -51.93 -0.31 0.21 16 27 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.68 8.04 -51.93 -0.42 0.26 16 30 H 0.10 1.87 5.68 -51.93 -0.29 1.57 16 31 H 0.10 1.57 8.02 -52.48 -0.42 1.15 16 32 H 0.37 7.58 8.58 -182.60 -1.57 6.01 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 35 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.52 5.93 -51.93 -0.31 0.21 16 40 H 0.06 0.51 8.08 -51.92 -0.42 0.09 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -28.17 328.51 -9.27 -37.43 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.39 Total: 5.34 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -2.63 Total: -22.09 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.83 Total: -41.38 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.17 -9.27 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771887938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.721 kcal (2) G-P(sol) polarization free energy of solvation -28.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds