Wall clock time and date at job start Mon Mar 30 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38396 * 119.83728 * 2 1 4 4 C 1.37906 * 120.15329 * 179.76593 * 3 2 1 5 5 C 1.50701 * 120.08067 * 180.23636 * 4 3 2 6 6 C 1.39702 * 119.84239 * 0.46595 * 4 3 2 7 7 C 1.47497 * 120.15621 * 179.78992 * 6 4 3 8 8 N 1.29742 * 120.00026 * 354.20323 * 7 6 4 9 9 N 1.40102 * 120.00118 * 179.97438 * 8 7 6 10 10 C 1.46494 * 120.00166 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47221 * 329.99983 * 10 9 8 12 12 C 1.53000 * 109.47318 * 90.00231 * 10 9 8 13 13 C 1.50706 * 109.47105 * 210.00420 * 10 9 8 14 14 H 1.07999 * 119.99847 * 359.97438 * 13 10 9 15 15 C 1.37876 * 119.99705 * 180.27765 * 13 10 9 16 16 N 1.31510 * 120.00053 * 359.72016 * 15 13 10 17 17 Si 1.86801 * 119.99680 * 179.72532 * 15 13 10 18 18 H 1.48493 * 109.47085 * 89.99934 * 17 15 13 19 19 H 1.48504 * 109.46881 * 209.99819 * 17 15 13 20 20 H 1.48495 * 109.46984 * 329.99238 * 17 15 13 21 21 C 1.39658 * 119.68868 * 359.51598 * 6 4 3 22 22 C 1.37959 * 119.84231 * 0.25535 * 21 6 4 23 23 C 1.50699 * 119.92628 * 179.97438 * 22 21 6 24 24 H 1.08995 * 109.46747 * 270.01506 * 1 2 3 25 25 H 1.08998 * 109.47495 * 30.02101 * 1 2 3 26 26 H 1.09002 * 109.46984 * 150.02122 * 1 2 3 27 27 H 1.08003 * 119.92381 * 0.02562 * 3 2 1 28 28 H 1.08996 * 109.47034 * 263.24975 * 5 4 3 29 29 H 1.09003 * 109.47040 * 23.24812 * 5 4 3 30 30 H 1.09005 * 109.47396 * 143.25244 * 5 4 3 31 31 H 1.08006 * 119.99955 * 174.20700 * 7 6 4 32 32 H 0.96999 * 119.99794 * 0.02562 * 9 8 7 33 33 H 1.08994 * 109.46814 * 59.99803 * 12 10 9 34 34 H 1.08994 * 109.47230 * 180.02562 * 12 10 9 35 35 H 1.09003 * 109.46872 * 300.00593 * 12 10 9 36 36 H 0.97006 * 120.00096 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.08063 * 180.22285 * 21 6 4 38 38 H 1.08998 * 109.47589 * 89.98941 * 23 22 21 39 39 H 1.08995 * 109.47380 * 209.99808 * 23 22 21 40 40 H 1.09011 * 109.46540 * 329.99399 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1956 1.2005 0.0000 4 6 3.5747 1.2081 0.0049 5 6 4.3228 2.5163 0.0102 6 6 4.2766 0.0002 0.0000 7 6 5.7515 0.0003 0.0004 8 7 6.4002 1.1187 -0.1081 9 7 7.8012 1.1188 -0.1071 10 6 8.5337 2.3816 -0.2290 11 1 7.9450 3.0881 -0.8142 12 6 8.7877 2.9605 1.1643 13 6 9.8510 2.1338 -0.9179 14 1 10.1162 1.1354 -1.2329 15 6 10.7202 3.1807 -1.1403 16 7 10.3974 4.3963 -0.7563 17 14 12.3564 2.8722 -1.9873 18 1 12.1903 3.0241 -3.4551 19 1 13.3593 3.8522 -1.4985 20 1 12.8202 1.4951 -1.6814 21 6 3.5751 -1.2074 0.0004 22 6 2.1955 -1.2000 0.0003 23 6 1.4367 -2.5020 0.0002 24 1 -0.3632 0.0003 1.0276 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6517 2.1336 0.0004 28 1 4.6116 2.7738 -1.0087 29 1 3.6821 3.2996 0.4153 30 1 5.2159 2.4217 0.6281 31 1 6.2916 -0.9306 0.0911 32 1 8.2862 0.2827 -0.0256 33 1 9.3764 2.2541 1.7494 34 1 9.3323 3.9003 1.0735 35 1 7.8349 3.1397 1.6625 36 1 11.0089 5.1329 -0.9131 37 1 4.1113 -2.1449 0.0002 38 1 1.2538 -2.8161 1.0278 39 1 0.4848 -2.3677 -0.5136 40 1 2.0227 -3.2640 -0.5138 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771887938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:51 Heat of formation + Delta-G solvation = 39.231862 kcal Electronic energy + Delta-G solvation = -18677.205987 eV Core-core repulsion = 15877.689721 eV Total energy + Delta-G solvation = -2799.516266 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62334 -38.13380 -36.26609 -34.77660 -33.51032 -32.59777 -30.17121 -29.52549 -27.51708 -27.20292 -25.72119 -23.28389 -22.69406 -22.08263 -20.28086 -18.66986 -17.77187 -17.02376 -16.42329 -15.99511 -15.71132 -15.34556 -15.24944 -14.52104 -14.48038 -14.22061 -13.90724 -13.60125 -13.52856 -13.46015 -13.29739 -12.96291 -12.91132 -12.72387 -12.66385 -12.52671 -12.27673 -12.14384 -11.95017 -11.87818 -11.67506 -11.12307 -10.60835 -10.48617 -9.76250 -9.32224 -8.33062 -8.16867 -6.35929 0.12496 0.55132 1.41846 1.42149 1.52831 1.74739 2.18639 2.46888 2.97091 3.10013 3.89849 3.95035 4.02546 4.13538 4.33067 4.37456 4.64206 4.69356 4.78199 4.81385 4.83399 4.89055 4.91159 4.97111 4.98140 5.08772 5.11533 5.12199 5.17208 5.29881 5.38872 5.48556 5.57194 5.64126 5.79390 5.80687 5.83949 5.93285 6.18441 6.21882 6.42074 6.84397 7.35771 7.77473 8.86102 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041738 B = 0.003607 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.689225 B = 7761.720884 C = 8122.664160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.129 4.129 4 C -0.080 4.080 5 C -0.107 4.107 6 C -0.050 4.050 7 C 0.017 3.983 8 N -0.225 5.225 9 N -0.646 5.646 10 C 0.309 3.691 11 H 0.001 0.999 12 C -0.136 4.136 13 C -0.549 4.549 14 H 0.060 0.940 15 C 0.019 3.981 16 N -0.914 5.914 17 Si 0.970 3.030 18 H -0.276 1.276 19 H -0.279 1.279 20 H -0.267 1.267 21 C -0.102 4.102 22 C -0.101 4.101 23 C -0.111 4.111 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.134 0.866 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.371 0.629 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.017 0.983 36 H 0.267 0.733 37 H 0.140 0.860 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.257 -11.299 2.182 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.083 4.083 5 C -0.164 4.164 6 C -0.053 4.053 7 C -0.192 4.192 8 N -0.035 5.035 9 N -0.382 5.382 10 C 0.205 3.795 11 H 0.019 0.981 12 C -0.195 4.195 13 C -0.588 4.588 14 H 0.078 0.922 15 C -0.181 4.181 16 N -0.552 5.552 17 Si 0.794 3.206 18 H -0.202 1.202 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.123 4.123 22 C -0.101 4.101 23 C -0.167 4.167 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.151 0.849 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.207 0.793 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.158 0.842 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.116 -9.932 2.072 20.764 hybrid contribution 1.754 -0.745 -0.264 1.924 sum -16.362 -10.677 1.808 19.621 Atomic orbital electron populations 1.20905 0.89094 1.03778 1.03159 1.20168 0.97540 0.92069 0.99228 1.21040 0.92599 0.98782 1.02312 1.20185 0.94305 0.94737 0.99050 1.20937 0.99967 0.93608 1.01841 1.18456 0.89621 0.93914 1.03271 1.24102 0.93802 0.94281 1.07006 1.74394 0.94433 1.26995 1.07710 1.48716 0.97985 1.09043 1.82478 1.18080 0.88803 0.80253 0.92330 0.98066 1.22020 0.98012 1.01783 0.97733 1.21542 1.02708 0.95200 1.39396 0.92191 1.25702 1.01894 0.94563 0.95948 1.70012 1.38047 1.00252 1.46903 0.85384 0.78510 0.78249 0.78424 1.20216 1.20419 1.19100 1.21218 0.94068 0.96687 1.00310 1.19949 0.93082 0.96284 1.00818 1.20875 1.00229 0.92466 1.03151 0.90199 0.91128 0.89710 0.84861 0.92990 0.91688 0.90874 0.86423 0.79257 0.95223 0.91213 0.96353 0.92377 0.84207 0.90280 0.89852 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.59 71.24 0.68 -0.88 16 2 C -0.09 -1.90 5.89 -19.80 -0.12 -2.02 16 3 C -0.13 -3.31 9.31 22.23 0.21 -3.11 16 4 C -0.08 -2.53 5.92 -19.59 -0.12 -2.64 16 5 C -0.11 -3.69 8.61 71.24 0.61 -3.08 16 6 C -0.05 -1.58 5.87 -20.14 -0.12 -1.70 16 7 C 0.02 0.58 10.70 87.44 0.94 1.52 16 8 N -0.23 -9.52 7.43 -52.16 -0.39 -9.91 16 9 N -0.65 -29.75 6.10 -172.52 -1.05 -30.80 16 10 C 0.31 16.45 3.24 44.25 0.14 16.59 16 11 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 12 C -0.14 -6.96 9.29 71.98 0.67 -6.29 16 13 C -0.55 -30.38 8.74 25.60 0.22 -30.16 16 14 H 0.06 3.22 7.79 -2.91 -0.02 3.20 16 15 C 0.02 1.05 5.30 84.65 0.45 1.50 16 16 N -0.91 -52.22 11.31 21.45 0.24 -51.98 16 17 Si 0.97 42.99 29.54 68.60 2.03 45.01 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 C -0.10 -2.53 9.44 22.55 0.21 -2.32 16 22 C -0.10 -2.13 5.87 -19.91 -0.12 -2.25 16 23 C -0.11 -1.49 9.60 71.24 0.68 -0.81 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 0.89 8.08 -2.39 -0.02 0.88 16 26 H 0.08 0.90 5.93 -2.39 -0.01 0.88 16 27 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.91 8.04 -2.39 -0.02 1.89 16 30 H 0.07 2.94 5.68 -2.38 -0.01 2.93 16 31 H 0.12 3.62 8.02 -2.91 -0.02 3.59 16 32 H 0.37 15.82 8.58 -213.32 -1.83 13.99 16 33 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 3.84 6.06 -2.39 -0.01 3.82 16 35 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 37 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.87 5.93 -2.39 -0.01 0.85 16 40 H 0.07 0.87 8.08 -2.38 -0.02 0.85 16 Total: -1.00 -62.85 328.51 4.38 -58.47 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.80 Total: 24.85 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: 4.35 Total: -35.64 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -1.20 Total: -92.69 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -62.85 4.38 -58.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771887938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.700 kcal (2) G-P(sol) polarization free energy of solvation -62.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds