Wall clock time and date at job start Mon Mar 30 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29742 * 120.00303 * 2 1 4 4 N 1.40103 * 119.99651 * 0.02562 * 3 2 1 5 5 C 1.46506 * 120.00115 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.46943 * 30.00004 * 5 4 3 7 7 C 1.53000 * 109.47074 * 270.00223 * 5 4 3 8 8 C 1.50696 * 109.46871 * 149.99684 * 5 4 3 9 9 H 1.07999 * 120.00319 * 0.02562 * 8 5 4 10 10 C 1.37885 * 119.99717 * 180.02562 * 8 5 4 11 11 N 1.31516 * 119.99913 * 180.02562 * 10 8 5 12 12 Si 1.86798 * 119.99766 * 0.02562 * 10 8 5 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.47497 * 120.00342 * 180.02562 * 2 1 3 17 17 C 1.39683 * 120.15230 * 359.72564 * 16 2 1 18 18 C 1.37931 * 119.84025 * 179.76612 * 17 16 2 19 19 C 1.50705 * 119.92291 * 180.27203 * 18 17 16 20 20 C 1.38366 * 120.15642 * 0.48524 * 18 17 16 21 21 C 1.38372 * 120.31442 * 359.78803 * 20 18 17 22 22 C 1.50699 * 119.91999 * 179.97438 * 21 20 18 23 23 C 1.37931 * 120.15532 * 359.95366 * 21 20 18 24 24 H 1.08993 * 109.47196 * 89.99804 * 1 2 3 25 25 H 1.09005 * 109.46872 * 209.99936 * 1 2 3 26 26 H 1.08994 * 109.46941 * 329.99634 * 1 2 3 27 27 H 0.96998 * 119.99805 * 0.02562 * 4 3 2 28 28 H 1.08996 * 109.47024 * 59.99854 * 7 5 4 29 29 H 1.08998 * 109.46637 * 179.97438 * 7 5 4 30 30 H 1.08997 * 109.46749 * 299.99711 * 7 5 4 31 31 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 32 32 H 1.08008 * 120.07986 * 359.97438 * 17 16 2 33 33 H 1.09000 * 109.47138 * 270.21539 * 19 18 17 34 34 H 1.08996 * 109.47007 * 30.21266 * 19 18 17 35 35 H 1.09003 * 109.46836 * 150.21238 * 19 18 17 36 36 H 1.07999 * 119.84507 * 179.76164 * 20 18 17 37 37 H 1.09000 * 109.47624 * 269.97874 * 22 21 20 38 38 H 1.08999 * 109.47315 * 29.97784 * 22 21 20 39 39 H 1.09004 * 109.47194 * 149.97713 * 22 21 20 40 40 H 1.08003 * 120.07723 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1557 1.1236 0.0000 4 7 1.4552 2.3369 0.0005 5 6 2.1877 3.6057 0.0011 6 1 3.1402 3.4756 -0.5128 7 6 2.4427 4.0467 1.4438 8 6 1.3732 4.6562 -0.7089 9 1 0.4065 4.4041 -1.1191 10 6 1.8623 5.9392 -0.8348 11 7 1.1513 6.8561 -1.4539 12 14 3.5347 6.3749 -0.1258 13 1 3.3726 6.8403 1.2750 14 1 4.4107 5.1761 -0.1510 15 1 4.1504 7.4550 -0.9380 16 6 2.2445 -1.2773 -0.0006 17 6 1.5494 -2.4889 0.0047 18 6 2.2456 -3.6796 -0.0008 19 6 1.4975 -4.9879 -0.0013 20 6 3.6293 -3.6758 -0.0013 21 6 4.3244 -2.4794 -0.0008 22 6 5.8314 -2.4856 -0.0007 23 6 3.6413 -1.2811 -0.0007 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 0.4852 2.3368 0.0013 28 1 3.0318 3.2868 1.9572 29 1 2.9881 4.9904 1.4442 30 1 1.4903 4.1768 1.9576 31 1 1.4952 7.7588 -1.5421 32 1 0.4693 -2.4933 0.0096 33 1 1.3175 -5.3039 1.0262 34 1 0.5444 -4.8611 -0.5147 35 1 2.0896 -5.7447 -0.5159 36 1 4.1693 -4.6111 -0.0017 37 1 6.1948 -2.4871 1.0269 38 1 6.1911 -3.3770 -0.5146 39 1 6.1984 -1.5971 -0.5145 40 1 4.1851 -0.3480 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771889255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:27 Heat of formation + Delta-G solvation = 36.531091 kcal Electronic energy + Delta-G solvation = -18713.894889 eV Core-core repulsion = 15914.261509 eV Total energy + Delta-G solvation = -2799.633381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48512 -38.52319 -36.38548 -34.39463 -34.15467 -32.60742 -30.26152 -28.88579 -28.01542 -27.24416 -27.00519 -24.08244 -22.18597 -21.43248 -20.29696 -18.75179 -17.67235 -17.14205 -17.04278 -16.02710 -15.76093 -15.32121 -15.02420 -14.99482 -14.60589 -14.39054 -14.13967 -13.94169 -13.84925 -13.72907 -13.37039 -13.26829 -12.88998 -12.76299 -12.69409 -12.60747 -12.22491 -11.99749 -11.90655 -11.85785 -11.53851 -11.31252 -10.85712 -10.83683 -9.85226 -9.41066 -8.41566 -8.37082 -6.46372 0.09634 0.53066 1.28282 1.34823 1.45246 1.67413 2.14016 2.25765 2.95922 2.98895 3.65823 3.92947 3.98871 4.24754 4.30004 4.39439 4.44485 4.51560 4.52417 4.58609 4.65589 4.70530 4.74829 4.76551 4.84885 4.95175 4.95402 5.03897 5.12036 5.13982 5.25337 5.30789 5.41387 5.47143 5.53213 5.72131 5.76950 5.83512 6.07918 6.18259 6.46205 6.60830 7.20294 7.69166 8.76757 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.029249 B = 0.004218 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.070856 B = 6637.038218 C = 7330.182353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.049 3.951 3 N -0.245 5.245 4 N -0.636 5.636 5 C 0.280 3.720 6 H 0.024 0.976 7 C -0.156 4.156 8 C -0.538 4.538 9 H 0.041 0.959 10 C 0.025 3.975 11 N -0.938 5.938 12 Si 0.950 3.050 13 H -0.259 1.259 14 H -0.254 1.254 15 H -0.291 1.291 16 C -0.027 4.027 17 C -0.118 4.118 18 C -0.086 4.086 19 C -0.110 4.110 20 C -0.124 4.124 21 C -0.091 4.091 22 C -0.112 4.112 23 C -0.126 4.126 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.376 0.624 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.271 0.729 32 H 0.143 0.857 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -23.998 5.159 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.140 4.140 3 N -0.055 5.055 4 N -0.374 5.374 5 C 0.174 3.826 6 H 0.042 0.958 7 C -0.215 4.215 8 C -0.577 4.577 9 H 0.060 0.940 10 C -0.174 4.174 11 N -0.577 5.577 12 Si 0.776 3.224 13 H -0.185 1.185 14 H -0.178 1.178 15 H -0.219 1.219 16 C -0.030 4.030 17 C -0.138 4.138 18 C -0.086 4.086 19 C -0.166 4.166 20 C -0.143 4.143 21 C -0.091 4.091 22 C -0.169 4.169 23 C -0.146 4.146 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.075 0.925 27 H 0.215 0.785 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.160 0.840 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.164 0.836 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.162 -23.167 5.095 24.275 hybrid contribution -0.797 1.041 -0.003 1.311 sum 4.365 -22.125 5.092 23.120 Atomic orbital electron populations 1.21089 0.91232 1.03854 1.03283 1.23074 0.94606 0.90883 1.05418 1.74069 1.28587 0.93134 1.09694 1.48189 1.05954 0.99805 1.83440 1.18490 0.92169 0.79503 0.92391 0.95802 1.22456 1.00807 0.99347 0.98889 1.21294 1.04912 0.94683 1.36773 0.94032 1.25665 1.01241 0.95674 0.94857 1.70000 1.40037 1.03924 1.43773 0.85845 0.79865 0.78296 0.78416 1.18476 1.17791 1.21861 1.18379 0.92776 0.90490 1.01306 1.21295 1.00644 0.90350 1.01522 1.20142 0.94050 0.95886 0.98562 1.20825 1.00085 0.92445 1.03246 1.21277 0.93816 0.97844 1.01332 1.20099 0.97309 0.92575 0.99158 1.20823 0.89729 1.03351 1.02986 1.21245 0.93688 0.98170 1.01495 0.90477 0.87948 0.92543 0.78476 0.93141 0.93774 0.92768 0.91976 0.83951 0.90147 0.90750 0.90274 0.83640 0.90418 0.89663 0.92177 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.04 71.23 0.64 -3.05 16 2 C 0.05 1.67 7.10 45.31 0.32 1.99 16 3 N -0.24 -10.06 10.61 -42.82 -0.45 -10.51 16 4 N -0.64 -28.49 5.95 -172.51 -1.03 -29.52 16 5 C 0.28 13.91 2.82 44.24 0.12 14.04 16 6 H 0.02 1.26 7.20 -2.38 -0.02 1.25 16 7 C -0.16 -6.95 9.00 71.98 0.65 -6.31 16 8 C -0.54 -30.98 9.32 25.60 0.24 -30.74 16 9 H 0.04 2.62 8.03 -2.91 -0.02 2.60 16 10 C 0.02 1.44 5.45 84.66 0.46 1.91 16 11 N -0.94 -57.86 13.96 21.45 0.30 -57.56 16 12 Si 0.95 44.83 24.37 68.60 1.67 46.50 16 13 H -0.26 -11.47 6.87 99.48 0.68 -10.78 16 14 H -0.25 -11.49 6.53 99.48 0.65 -10.84 16 15 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 16 C -0.03 -0.81 5.87 -20.14 -0.12 -0.93 16 17 C -0.12 -2.69 9.01 22.55 0.20 -2.48 16 18 C -0.09 -1.65 5.87 -19.91 -0.12 -1.77 16 19 C -0.11 -1.29 10.01 71.24 0.71 -0.58 16 20 C -0.12 -2.40 9.34 22.33 0.21 -2.19 16 21 C -0.09 -2.14 5.87 -19.91 -0.12 -2.26 16 22 C -0.11 -2.02 10.01 71.24 0.71 -1.31 16 23 C -0.13 -3.75 9.23 22.54 0.21 -3.54 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.10 2.10 6.47 -2.38 -0.02 2.08 16 26 H 0.06 1.65 6.35 -2.39 -0.02 1.63 16 27 H 0.38 16.12 6.36 -213.32 -1.36 14.76 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 1.95 3.28 -2.39 -0.01 1.95 16 30 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.14 2.60 6.35 -2.91 -0.02 2.58 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 35 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 36 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 39 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 40 H 0.11 3.62 7.55 -2.91 -0.02 3.60 16 Total: -1.00 -67.70 324.34 4.22 -63.49 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.40 Total: 24.81 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 4.13 Total: -37.21 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -1.18 Total: -97.59 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.67 Total: 46.50 kcal Total: -67.70 4.22 -63.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771889255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.018 kcal (2) G-P(sol) polarization free energy of solvation -67.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds