Wall clock time and date at job start Mon Mar 30 2020 06:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29744 * 120.00103 * 2 1 4 4 N 1.40099 * 119.99872 * 0.02562 * 3 2 1 5 5 C 1.46500 * 119.99918 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.47452 * 329.99734 * 5 4 3 7 7 C 1.53006 * 109.46998 * 89.99656 * 5 4 3 8 8 C 1.50698 * 109.46840 * 209.99483 * 5 4 3 9 9 H 1.07993 * 120.00472 * 359.97438 * 8 5 4 10 10 C 1.37884 * 119.99909 * 179.97438 * 8 5 4 11 11 N 1.31522 * 119.99817 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 120.00071 * 180.02562 * 10 8 5 13 13 H 1.48496 * 109.46966 * 60.00398 * 12 10 8 14 14 H 1.48503 * 109.46926 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47227 * 300.00019 * 12 10 8 16 16 C 1.47496 * 119.99878 * 180.02562 * 2 1 3 17 17 C 1.39686 * 120.15346 * 359.72048 * 16 2 1 18 18 C 1.37941 * 119.83547 * 179.76955 * 17 16 2 19 19 C 1.50699 * 119.91945 * 180.27363 * 18 17 16 20 20 C 1.38359 * 120.15700 * 0.48909 * 18 17 16 21 21 C 1.38373 * 120.31735 * 359.78884 * 20 18 17 22 22 C 1.50699 * 119.92193 * 179.97438 * 21 20 18 23 23 C 1.37933 * 120.15630 * 359.95014 * 21 20 18 24 24 H 1.08999 * 109.47396 * 89.99927 * 1 2 3 25 25 H 1.08995 * 109.47093 * 210.00025 * 1 2 3 26 26 H 1.09001 * 109.47240 * 329.99818 * 1 2 3 27 27 H 0.97007 * 119.99995 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.46998 * 179.97438 * 7 5 4 29 29 H 1.09000 * 109.47050 * 299.99945 * 7 5 4 30 30 H 1.09001 * 109.46801 * 60.00058 * 7 5 4 31 31 H 0.96991 * 120.00052 * 179.97438 * 11 10 8 32 32 H 1.07999 * 120.08122 * 359.97438 * 17 16 2 33 33 H 1.09001 * 109.47362 * 270.21843 * 19 18 17 34 34 H 1.09007 * 109.46914 * 30.21279 * 19 18 17 35 35 H 1.08997 * 109.47294 * 150.21012 * 19 18 17 36 36 H 1.07999 * 119.84360 * 179.76038 * 20 18 17 37 37 H 1.09005 * 109.47014 * 269.97658 * 22 21 20 38 38 H 1.09001 * 109.47526 * 29.97126 * 22 21 20 39 39 H 1.08996 * 109.47671 * 149.97600 * 22 21 20 40 40 H 1.08005 * 120.07762 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1236 0.0000 4 7 1.4553 2.3369 0.0005 5 6 2.1878 3.6056 0.0011 6 1 3.1401 3.4751 0.5149 7 6 2.4429 4.0479 -1.4413 8 6 1.3733 4.6555 0.7119 9 1 0.4065 4.4032 1.1218 10 6 1.8623 5.9385 0.8389 11 7 3.0394 6.2459 0.3393 12 14 0.8530 7.2398 1.7205 13 1 0.6056 6.8100 3.1203 14 1 1.5960 8.5255 1.7221 15 1 -0.4445 7.4181 1.0207 16 6 2.2445 -1.2774 -0.0006 17 6 1.5493 -2.4889 0.0048 18 6 2.2456 -3.6797 -0.0006 19 6 1.4974 -4.9879 -0.0011 20 6 3.6291 -3.6759 -0.0011 21 6 4.3243 -2.4795 -0.0005 22 6 5.8313 -2.4857 -0.0005 23 6 3.6412 -1.2811 -0.0006 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 0.4852 2.3369 0.0005 28 1 2.9875 4.9921 -1.4408 29 1 3.0320 3.2884 -1.9554 30 1 1.4904 4.1784 -1.9550 31 1 3.3833 7.1485 0.4283 32 1 0.4693 -2.4933 0.0098 33 1 1.3173 -5.3039 1.0265 34 1 0.5443 -4.8611 -0.5145 35 1 2.0894 -5.7448 -0.5156 36 1 4.1692 -4.6112 -0.0014 37 1 6.1946 -2.4872 1.0273 38 1 6.1911 -3.3772 -0.5142 39 1 6.1984 -1.5973 -0.5142 40 1 4.1851 -0.3480 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771889257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:29 Heat of formation + Delta-G solvation = 30.443548 kcal Electronic energy + Delta-G solvation = -18645.703162 eV Core-core repulsion = 15845.805806 eV Total energy + Delta-G solvation = -2799.897356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47135 -38.43073 -36.30722 -34.38947 -33.99649 -32.19847 -30.07535 -28.64716 -27.99243 -27.34247 -27.00514 -24.03028 -22.20195 -21.42428 -20.18538 -18.57704 -17.44861 -17.11106 -16.91993 -16.04079 -15.67627 -15.28476 -14.98591 -14.63458 -14.55251 -14.29073 -13.95112 -13.92101 -13.79404 -13.26975 -13.19803 -12.93272 -12.85875 -12.77323 -12.68564 -12.55515 -12.31233 -12.16309 -11.95555 -11.87583 -11.82571 -11.15449 -10.78607 -10.59738 -9.81698 -9.40907 -8.35369 -8.17740 -6.37359 0.12099 0.53190 1.41264 1.43566 1.51478 1.71579 2.18919 2.46997 2.99356 3.09023 3.69068 3.94825 3.99413 4.27604 4.31463 4.45241 4.51996 4.53984 4.63649 4.68880 4.76619 4.78172 4.83988 4.93807 4.95823 5.03932 5.09081 5.12108 5.14204 5.26567 5.33919 5.42545 5.50457 5.64041 5.73478 5.77096 5.80423 5.90852 6.18317 6.19040 6.40326 6.82307 7.34330 7.78606 8.85446 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.030944 B = 0.003896 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.645671 B = 7184.256053 C = 7746.718788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.039 3.961 3 N -0.247 5.247 4 N -0.638 5.638 5 C 0.307 3.693 6 H -0.002 1.002 7 C -0.135 4.135 8 C -0.550 4.550 9 H 0.061 0.939 10 C 0.019 3.981 11 N -0.915 5.915 12 Si 0.972 3.028 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.266 1.266 16 C -0.026 4.026 17 C -0.118 4.118 18 C -0.086 4.086 19 C -0.109 4.109 20 C -0.124 4.124 21 C -0.092 4.092 22 C -0.112 4.112 23 C -0.129 4.129 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.374 0.626 28 H 0.070 0.930 29 H 0.015 0.985 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.144 0.856 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 -21.151 -1.012 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 N -0.058 5.058 4 N -0.376 5.376 5 C 0.203 3.797 6 H 0.015 0.985 7 C -0.194 4.194 8 C -0.589 4.589 9 H 0.079 0.921 10 C -0.181 4.181 11 N -0.553 5.553 12 Si 0.796 3.204 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.191 1.191 16 C -0.028 4.028 17 C -0.139 4.139 18 C -0.086 4.086 19 C -0.165 4.165 20 C -0.143 4.143 21 C -0.092 4.092 22 C -0.169 4.169 23 C -0.149 4.149 24 H 0.099 0.901 25 H 0.118 0.882 26 H 0.073 0.927 27 H 0.213 0.787 28 H 0.088 0.912 29 H 0.034 0.966 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.162 0.838 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.165 0.835 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.168 -20.341 -1.036 20.401 hybrid contribution -1.267 1.206 0.359 1.786 sum -2.435 -19.135 -0.678 19.301 Atomic orbital electron populations 1.21070 0.91048 1.03693 1.03351 1.23092 0.94718 0.90859 1.06300 1.74106 1.29117 0.93476 1.09125 1.48533 1.05930 1.00073 1.83078 1.18107 0.91113 0.77974 0.92495 0.98455 1.22012 0.99021 1.00665 0.97700 1.21488 1.04774 0.95268 1.37390 0.92120 1.25736 0.96161 1.00272 0.95963 1.70014 1.18813 1.20957 1.45499 0.85407 0.78627 0.77533 0.78828 1.19801 1.20522 1.19127 1.18409 0.92688 0.90684 1.00987 1.21294 1.00650 0.90258 1.01665 1.20154 0.94015 0.95930 0.98476 1.20822 1.00101 0.92351 1.03241 1.21262 0.93854 0.97723 1.01477 1.20101 0.97292 0.92596 0.99189 1.20822 0.89803 1.03341 1.02925 1.21232 0.93871 0.98038 1.01791 0.90058 0.88173 0.92732 0.78697 0.91165 0.96624 0.95078 0.92336 0.83816 0.90196 0.90634 0.90213 0.83546 0.90564 0.89445 0.92337 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.04 71.24 0.64 -3.08 16 2 C 0.04 1.42 7.10 45.31 0.32 1.74 16 3 N -0.25 -11.02 10.61 -42.81 -0.45 -11.47 16 4 N -0.64 -30.27 5.95 -172.52 -1.03 -31.30 16 5 C 0.31 16.76 3.23 44.25 0.14 16.91 16 6 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 7 C -0.13 -7.05 9.29 71.98 0.67 -6.38 16 8 C -0.55 -30.79 8.74 25.60 0.22 -30.56 16 9 H 0.06 3.28 7.78 -2.91 -0.02 3.26 16 10 C 0.02 1.05 5.30 84.66 0.45 1.50 16 11 N -0.91 -52.83 11.32 21.45 0.24 -52.58 16 12 Si 0.97 43.15 29.54 68.60 2.03 45.18 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 16 C -0.03 -0.81 5.87 -20.14 -0.12 -0.93 16 17 C -0.12 -2.86 9.01 22.55 0.20 -2.66 16 18 C -0.09 -1.74 5.87 -19.91 -0.12 -1.86 16 19 C -0.11 -1.36 10.01 71.24 0.71 -0.64 16 20 C -0.12 -2.59 9.34 22.33 0.21 -2.38 16 21 C -0.09 -2.35 5.87 -19.90 -0.12 -2.46 16 22 C -0.11 -2.27 10.01 71.24 0.71 -1.55 16 23 C -0.13 -4.20 9.23 22.55 0.21 -4.00 16 24 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.10 2.16 6.46 -2.39 -0.02 2.15 16 26 H 0.05 1.66 6.35 -2.39 -0.02 1.64 16 27 H 0.37 16.33 6.36 -213.31 -1.36 14.98 16 28 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 29 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.14 2.76 6.35 -2.91 -0.02 2.74 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.82 8.08 -2.38 -0.02 0.80 16 35 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 36 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.09 1.32 8.08 -2.39 -0.02 1.30 16 39 H 0.06 1.27 8.08 -2.39 -0.02 1.26 16 40 H 0.10 3.84 7.56 -2.91 -0.02 3.82 16 Total: -1.00 -65.49 331.16 4.60 -60.89 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.33 Total: 25.65 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 4.14 Total: -36.36 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -1.24 Total: -95.36 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -65.49 4.60 -60.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771889257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.334 kcal (2) G-P(sol) polarization free energy of solvation -65.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds