Wall clock time and date at job start Mon Mar 30 2020 07:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47211 * 2 1 4 4 C 1.50696 * 109.47368 * 179.97438 * 3 2 1 5 5 C 1.38393 * 119.92089 * 270.02317 * 4 3 2 6 6 C 1.38349 * 120.31595 * 180.02562 * 5 4 3 7 7 C 1.37962 * 120.15260 * 359.69945 * 6 5 4 8 8 C 1.39657 * 119.84362 * 0.53198 * 7 6 5 9 9 C 1.47492 * 120.15908 * 179.77159 * 8 7 6 10 10 N 1.29746 * 119.99853 * 359.71710 * 9 8 7 11 11 N 1.40098 * 120.00256 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.00125 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47073 * 30.00038 * 12 11 10 14 14 C 1.52999 * 109.47193 * 270.00064 * 12 11 10 15 15 C 1.50696 * 109.47267 * 149.99941 * 12 11 10 16 16 H 1.08007 * 119.99960 * 34.31353 * 15 12 11 17 17 C 1.37878 * 120.00149 * 214.58481 * 15 12 11 18 18 N 1.31518 * 119.99785 * 182.31066 * 17 15 12 19 19 Si 1.86790 * 119.99936 * 2.30943 * 17 15 12 20 20 H 1.48503 * 109.47058 * 85.08000 * 19 17 15 21 21 H 1.48501 * 109.47209 * 205.07924 * 19 17 15 22 22 H 1.48502 * 109.47288 * 325.07920 * 19 17 15 23 23 C 1.37921 * 119.92429 * 89.99808 * 4 3 2 24 24 H 1.09006 * 109.47206 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47482 * 299.99941 * 1 2 3 26 26 H 1.08999 * 109.46989 * 60.00365 * 1 2 3 27 27 H 1.09000 * 109.47058 * 239.99999 * 2 1 3 28 28 H 1.08995 * 109.47216 * 120.00344 * 2 1 3 29 29 H 1.09000 * 109.47110 * 60.00031 * 3 2 1 30 30 H 1.08999 * 109.46846 * 299.99723 * 3 2 1 31 31 H 1.07997 * 119.84110 * 0.02562 * 5 4 3 32 32 H 1.07995 * 119.92327 * 179.97438 * 6 5 4 33 33 H 1.08005 * 120.07592 * 180.27459 * 7 6 5 34 34 H 1.07993 * 120.00236 * 179.72469 * 9 8 7 35 35 H 0.96993 * 119.99675 * 0.02562 * 11 10 9 36 36 H 1.08999 * 109.47075 * 181.00344 * 14 12 11 37 37 H 1.09000 * 109.47257 * 301.00458 * 14 12 11 38 38 H 1.08999 * 109.46792 * 61.00324 * 14 12 11 39 39 H 0.96998 * 119.99687 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.07599 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2368 1.4422 1.2004 6 6 5.6202 1.4428 1.2105 7 6 6.3219 1.4374 0.0227 8 6 5.6325 1.4426 -1.1918 9 6 6.3757 1.4420 -2.4658 10 7 7.6731 1.4421 -2.4599 11 7 8.3792 1.4421 -3.6700 12 6 9.8441 1.4417 -3.6633 13 1 10.2033 0.9276 -2.7717 14 6 10.3545 2.8840 -3.6609 15 6 10.3519 0.7313 -4.8915 16 1 9.8078 0.8048 -5.8216 17 6 11.5080 -0.0172 -4.8266 18 7 11.9758 -0.5998 -5.9089 19 14 12.4099 -0.2035 -3.2015 20 1 11.8130 -1.3230 -2.4296 21 1 13.8436 -0.4903 -3.4610 22 1 12.2901 1.0547 -2.4217 23 6 4.2355 1.4423 -1.1944 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6925 1.4416 2.1332 32 1 6.1521 1.4430 2.1504 33 1 7.4019 1.4334 0.0321 34 1 5.8400 1.4415 -3.4035 35 1 7.8980 1.4423 -4.5122 36 1 11.4445 2.8837 -3.6739 37 1 9.9807 3.4032 -4.5433 38 1 10.0020 3.3926 -2.7635 39 1 12.7890 -1.1267 -5.8631 40 1 3.6959 1.4426 -2.1300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774395043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:20 Heat of formation + Delta-G solvation = 40.133422 kcal Electronic energy + Delta-G solvation = -18126.113541 eV Core-core repulsion = 15326.636370 eV Total energy + Delta-G solvation = -2799.477172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.29160 -36.61712 -35.26545 -33.94562 -32.02941 -31.01954 -30.65526 -27.53550 -26.38264 -25.29484 -23.20720 -22.31006 -21.37969 -20.22905 -19.54083 -17.32107 -16.42367 -16.09773 -15.43722 -15.25661 -14.78490 -14.12616 -13.91907 -13.70271 -13.51009 -13.17005 -12.91813 -12.57972 -12.42294 -12.19617 -12.15729 -11.93068 -11.44940 -11.29681 -11.09576 -11.03823 -10.80776 -10.77409 -10.73294 -10.38876 -9.95206 -9.60195 -9.20082 -8.85224 -8.70697 -8.57222 -6.89724 -6.25927 -4.29468 1.21592 1.53853 2.98463 3.21755 3.30109 3.33276 3.66587 4.10003 4.28241 4.66064 4.74816 4.91951 5.02776 5.05029 5.14733 5.26896 5.29576 5.36449 5.54560 5.61573 5.63520 5.69806 5.79451 5.88948 5.97936 6.10446 6.14956 6.20967 6.26371 6.48013 6.55202 6.65855 6.68801 6.74061 6.81671 7.08401 7.15186 7.24284 7.51352 8.04458 8.35315 8.76127 9.19037 9.34997 10.86179 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.031804 B = 0.003376 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.190105 B = 8291.474307 C = 8507.074962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.078 4.078 4 C -0.085 4.085 5 C -0.128 4.128 6 C -0.118 4.118 7 C -0.106 4.106 8 C -0.004 4.004 9 C -0.010 4.010 10 N -0.200 5.200 11 N -0.619 5.619 12 C 0.265 3.735 13 H 0.043 0.957 14 C -0.151 4.151 15 C -0.528 4.528 16 H 0.077 0.923 17 C 0.080 3.920 18 N -0.889 5.889 19 Si 0.878 3.122 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.261 1.261 23 C -0.111 4.111 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.373 0.627 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.027 0.973 39 H 0.268 0.732 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.301 3.683 12.922 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.115 4.115 4 C -0.085 4.085 5 C -0.148 4.148 6 C -0.136 4.136 7 C -0.126 4.126 8 C -0.006 4.006 9 C -0.218 4.218 10 N -0.012 5.012 11 N -0.356 5.356 12 C 0.162 3.838 13 H 0.060 0.940 14 C -0.211 4.211 15 C -0.567 4.567 16 H 0.095 0.905 17 C -0.125 4.125 18 N -0.526 5.526 19 Si 0.705 3.295 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.185 1.185 23 C -0.132 4.132 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.120 0.880 35 H 0.210 0.790 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.080 3.563 13.367 21.979 hybrid contribution -0.159 -0.218 -0.325 0.422 sum -17.238 3.345 13.042 21.873 Atomic orbital electron populations 1.21793 0.95901 1.01601 1.01715 1.21521 0.95397 0.96296 1.02550 1.20598 0.91091 0.97198 1.02615 1.19675 0.95266 1.00528 0.93023 1.20969 0.94193 1.02462 0.97141 1.21046 0.94104 1.00481 0.97935 1.21374 1.00637 0.99175 0.91399 1.18445 0.92191 0.98428 0.91565 1.23507 0.90928 1.11536 0.95824 1.73888 1.09026 1.04021 1.14264 1.49180 1.06122 1.80438 0.99852 1.18891 0.74339 0.92788 0.97761 0.93956 1.22352 1.00553 0.99105 0.99049 1.21033 1.09445 1.30643 0.95603 0.90500 1.24949 0.96851 0.94005 0.96662 1.69880 1.22315 1.32214 1.28147 0.86847 0.78936 0.79598 0.84158 1.19835 1.21133 1.18540 1.20987 0.92789 1.01836 0.97562 0.92779 0.92834 0.92728 0.91708 0.91897 0.91282 0.91147 0.86699 0.86331 0.85274 0.87993 0.79031 0.92766 0.93609 0.95432 0.92178 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 3 C -0.08 -0.66 5.34 -27.89 -0.15 -0.81 16 4 C -0.08 -0.95 5.13 -104.68 -0.54 -1.48 16 5 C -0.13 -1.43 9.69 -39.48 -0.38 -1.82 16 6 C -0.12 -1.45 10.03 -39.64 -0.40 -1.84 16 7 C -0.11 -1.56 9.58 -39.15 -0.38 -1.93 16 8 C 0.00 -0.06 5.87 -105.05 -0.62 -0.68 16 9 C -0.01 -0.17 10.75 -14.66 -0.16 -0.32 16 10 N -0.20 -4.00 10.61 32.16 0.34 -3.66 16 11 N -0.62 -13.41 6.10 -5.88 -0.04 -13.45 16 12 C 0.27 6.34 2.84 -69.08 -0.20 6.14 16 13 H 0.04 1.06 5.43 -51.93 -0.28 0.78 16 14 C -0.15 -3.28 9.48 37.16 0.35 -2.93 16 15 C -0.53 -14.42 9.08 -34.44 -0.31 -14.73 16 16 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 17 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 18 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 19 Si 0.88 21.16 26.77 -169.99 -4.55 16.61 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.26 -6.02 6.81 56.52 0.38 -5.63 16 23 C -0.11 -1.40 9.44 -39.15 -0.37 -1.77 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.11 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.13 2.03 7.55 -52.48 -0.40 1.63 16 34 H 0.10 1.55 8.02 -52.49 -0.42 1.13 16 35 H 0.37 7.61 8.60 -182.61 -1.57 6.04 16 36 H 0.05 1.17 7.89 -51.93 -0.41 0.76 16 37 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 338.19 15.07 5.10 5.10 Total: -1.00 -29.40 338.19 -9.12 -38.52 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.72 Total: 4.25 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -3.03 Total: -21.82 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 1.08 Total: -42.66 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.55 Total: 16.61 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.40 -9.12 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774395043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.657 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds