Wall clock time and date at job start Mon Mar 30 2020 07:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47211 * 2 1 4 4 C 1.50696 * 109.47368 * 179.97438 * 3 2 1 5 5 C 1.38393 * 119.92089 * 270.02317 * 4 3 2 6 6 C 1.38349 * 120.31595 * 180.02562 * 5 4 3 7 7 C 1.37962 * 120.15260 * 359.69945 * 6 5 4 8 8 C 1.39657 * 119.84362 * 0.53198 * 7 6 5 9 9 C 1.47492 * 120.15908 * 179.77159 * 8 7 6 10 10 N 1.29746 * 119.99853 * 359.71710 * 9 8 7 11 11 N 1.40098 * 120.00256 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.00125 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47073 * 30.00038 * 12 11 10 14 14 C 1.52999 * 109.47193 * 270.00064 * 12 11 10 15 15 C 1.50696 * 109.47267 * 149.99941 * 12 11 10 16 16 H 1.08007 * 119.99960 * 34.31353 * 15 12 11 17 17 C 1.37878 * 120.00149 * 214.58481 * 15 12 11 18 18 N 1.31518 * 119.99785 * 182.31066 * 17 15 12 19 19 Si 1.86790 * 119.99936 * 2.30943 * 17 15 12 20 20 H 1.48503 * 109.47058 * 85.08000 * 19 17 15 21 21 H 1.48501 * 109.47209 * 205.07924 * 19 17 15 22 22 H 1.48502 * 109.47288 * 325.07920 * 19 17 15 23 23 C 1.37921 * 119.92429 * 89.99808 * 4 3 2 24 24 H 1.09006 * 109.47206 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47482 * 299.99941 * 1 2 3 26 26 H 1.08999 * 109.46989 * 60.00365 * 1 2 3 27 27 H 1.09000 * 109.47058 * 239.99999 * 2 1 3 28 28 H 1.08995 * 109.47216 * 120.00344 * 2 1 3 29 29 H 1.09000 * 109.47110 * 60.00031 * 3 2 1 30 30 H 1.08999 * 109.46846 * 299.99723 * 3 2 1 31 31 H 1.07997 * 119.84110 * 0.02562 * 5 4 3 32 32 H 1.07995 * 119.92327 * 179.97438 * 6 5 4 33 33 H 1.08005 * 120.07592 * 180.27459 * 7 6 5 34 34 H 1.07993 * 120.00236 * 179.72469 * 9 8 7 35 35 H 0.96993 * 119.99675 * 0.02562 * 11 10 9 36 36 H 1.08999 * 109.47075 * 181.00344 * 14 12 11 37 37 H 1.09000 * 109.47257 * 301.00458 * 14 12 11 38 38 H 1.08999 * 109.46792 * 61.00324 * 14 12 11 39 39 H 0.96998 * 119.99687 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.07599 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2368 1.4422 1.2004 6 6 5.6202 1.4428 1.2105 7 6 6.3219 1.4374 0.0227 8 6 5.6325 1.4426 -1.1918 9 6 6.3757 1.4420 -2.4658 10 7 7.6731 1.4421 -2.4599 11 7 8.3792 1.4421 -3.6700 12 6 9.8441 1.4417 -3.6633 13 1 10.2033 0.9276 -2.7717 14 6 10.3545 2.8840 -3.6609 15 6 10.3519 0.7313 -4.8915 16 1 9.8078 0.8048 -5.8216 17 6 11.5080 -0.0172 -4.8266 18 7 11.9758 -0.5998 -5.9089 19 14 12.4099 -0.2035 -3.2015 20 1 11.8130 -1.3230 -2.4296 21 1 13.8436 -0.4903 -3.4610 22 1 12.2901 1.0547 -2.4217 23 6 4.2355 1.4423 -1.1944 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6925 1.4416 2.1332 32 1 6.1521 1.4430 2.1504 33 1 7.4019 1.4334 0.0321 34 1 5.8400 1.4415 -3.4035 35 1 7.8980 1.4423 -4.5122 36 1 11.4445 2.8837 -3.6739 37 1 9.9807 3.4032 -4.5433 38 1 10.0020 3.3926 -2.7635 39 1 12.7890 -1.1267 -5.8631 40 1 3.6959 1.4426 -2.1300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774395043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:19 Heat of formation + Delta-G solvation = 24.264139 kcal Electronic energy + Delta-G solvation = -18126.801685 eV Core-core repulsion = 15326.636370 eV Total energy + Delta-G solvation = -2800.165315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28003 -38.13663 -36.28627 -35.44460 -33.84657 -31.99814 -31.85794 -29.00147 -27.31298 -27.14888 -24.45661 -23.16124 -22.22420 -22.02118 -20.75378 -19.18141 -17.56371 -17.53108 -16.96529 -16.15974 -16.01615 -15.46211 -14.98408 -14.76107 -14.61250 -14.46113 -14.44084 -14.09932 -13.99778 -13.42336 -13.02013 -12.87315 -12.80251 -12.79489 -12.58505 -12.21338 -12.03802 -11.93700 -11.85839 -11.62717 -11.43192 -11.29653 -10.95591 -10.84650 -9.96741 -9.55733 -8.41473 -8.39720 -6.48063 0.10959 0.56133 1.31384 1.33668 1.44630 1.74252 2.11860 2.27213 3.01476 3.04814 3.86162 3.89173 4.01902 4.26570 4.31835 4.34781 4.38689 4.49720 4.55519 4.62246 4.74534 4.77537 4.82264 4.87002 4.96918 5.01673 5.08249 5.14620 5.19663 5.28481 5.34907 5.37981 5.45161 5.51867 5.54081 5.68759 5.76983 5.81955 6.12079 6.17099 6.48078 6.61184 7.20429 7.68520 8.75558 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.031804 B = 0.003376 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.190105 B = 8291.474307 C = 8507.074962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.074 4.074 4 C -0.085 4.085 5 C -0.118 4.118 6 C -0.122 4.122 7 C -0.121 4.121 8 C -0.038 4.038 9 C 0.026 3.974 10 N -0.241 5.241 11 N -0.641 5.641 12 C 0.273 3.727 13 H 0.032 0.968 14 C -0.144 4.144 15 C -0.531 4.531 16 H 0.042 0.958 17 C 0.026 3.974 18 N -0.936 5.936 19 Si 0.939 3.061 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.244 1.244 23 C -0.106 4.106 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.373 0.627 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.271 0.729 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.647 4.333 15.702 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.112 4.112 4 C -0.085 4.085 5 C -0.137 4.137 6 C -0.140 4.140 7 C -0.142 4.142 8 C -0.040 4.040 9 C -0.184 4.184 10 N -0.050 5.050 11 N -0.378 5.378 12 C 0.169 3.831 13 H 0.050 0.950 14 C -0.203 4.203 15 C -0.570 4.570 16 H 0.060 0.940 17 C -0.174 4.174 18 N -0.575 5.575 19 Si 0.762 3.238 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.167 1.167 23 C -0.127 4.127 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.210 0.790 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.438 4.228 16.157 25.628 hybrid contribution 0.221 -0.411 -1.084 1.180 sum -19.217 3.817 15.074 24.720 Atomic orbital electron populations 1.21775 0.94784 1.01956 1.02308 1.21502 0.96368 0.95831 1.01978 1.20645 0.88970 0.97688 1.03865 1.20034 0.96850 0.99164 0.92471 1.21383 0.93824 0.99987 0.98464 1.21298 0.94889 0.99930 0.97843 1.21398 1.00078 1.00176 0.92512 1.18520 0.93223 1.01576 0.90693 1.24086 0.90400 1.06343 0.97587 1.73928 1.10251 1.07824 1.13016 1.48675 1.05309 1.83256 1.00535 1.18597 0.75896 0.93317 0.95276 0.94994 1.22231 1.00335 0.97893 0.99853 1.21244 1.09195 1.30716 0.95820 0.93961 1.25765 0.97804 0.93827 1.00036 1.70004 1.23264 1.33788 1.30409 0.85879 0.77806 0.80138 0.79970 1.19864 1.20305 1.16699 1.21219 0.91766 1.00604 0.99113 0.92619 0.91967 0.92426 0.92759 0.92071 0.89650 0.90382 0.83716 0.84279 0.87084 0.86447 0.79008 0.92905 0.93450 0.93927 0.91970 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 3 C -0.07 -0.99 5.34 29.85 0.16 -0.83 16 4 C -0.09 -1.61 5.13 -19.90 -0.10 -1.72 16 5 C -0.12 -2.19 9.69 22.33 0.22 -1.97 16 6 C -0.12 -2.69 10.03 22.23 0.22 -2.47 16 7 C -0.12 -3.45 9.58 22.55 0.22 -3.23 16 8 C -0.04 -1.09 5.87 -20.14 -0.12 -1.21 16 9 C 0.03 0.85 10.75 87.44 0.94 1.79 16 10 N -0.24 -9.70 10.61 -52.17 -0.55 -10.25 16 11 N -0.64 -28.31 6.10 -172.52 -1.05 -29.36 16 12 C 0.27 13.26 2.84 44.24 0.13 13.38 16 13 H 0.03 1.61 5.43 -2.38 -0.01 1.59 16 14 C -0.14 -6.21 9.48 71.98 0.68 -5.53 16 15 C -0.53 -29.97 9.08 25.60 0.23 -29.74 16 16 H 0.04 2.61 8.06 -2.91 -0.02 2.58 16 17 C 0.03 1.47 5.47 84.65 0.46 1.93 16 18 N -0.94 -57.19 13.96 21.45 0.30 -56.89 16 19 Si 0.94 44.08 26.77 68.60 1.84 45.92 16 20 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.24 -10.66 6.81 99.48 0.68 -9.98 16 23 C -0.11 -2.42 9.44 22.55 0.21 -2.21 16 24 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 30 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 32 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.11 3.52 7.55 -2.91 -0.02 3.50 16 34 H 0.12 3.45 8.02 -2.91 -0.02 3.43 16 35 H 0.37 15.75 8.60 -213.33 -1.83 13.91 16 36 H 0.05 2.25 7.89 -2.39 -0.02 2.23 16 37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -64.92 338.19 3.82 -61.11 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.86 Total: 23.51 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 4.15 Total: -34.03 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -1.31 Total: -96.51 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.84 Total: 45.92 kcal Total: -64.92 3.82 -61.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774395043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.372 kcal (2) G-P(sol) polarization free energy of solvation -64.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds