Wall clock time and date at job start Mon Mar 30 2020 07:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46716 * 2 1 4 4 C 1.50706 * 109.47032 * 179.97438 * 3 2 1 5 5 C 1.38383 * 119.92342 * 270.02757 * 4 3 2 6 6 C 1.38354 * 120.31670 * 179.97438 * 5 4 3 7 7 C 1.37955 * 120.15452 * 359.69539 * 6 5 4 8 8 C 1.39661 * 119.83838 * 0.55242 * 7 6 5 9 9 C 1.47496 * 120.15356 * 179.74776 * 8 7 6 10 10 N 1.29741 * 120.00361 * 359.72033 * 9 8 7 11 11 N 1.40095 * 120.00346 * 180.02562 * 10 9 8 12 12 C 1.46507 * 119.99857 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.47290 * 330.00145 * 12 11 10 14 14 C 1.52998 * 109.46839 * 90.00109 * 12 11 10 15 15 C 1.50703 * 109.46830 * 209.99830 * 12 11 10 16 16 H 1.08001 * 120.00074 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99483 * 179.97438 * 15 12 11 18 18 N 1.31522 * 119.99645 * 180.02562 * 17 15 12 19 19 Si 1.86796 * 120.00237 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47068 * 90.00299 * 19 17 15 21 21 H 1.48511 * 109.46852 * 209.99972 * 19 17 15 22 22 H 1.48500 * 109.47158 * 329.99610 * 19 17 15 23 23 C 1.37918 * 119.91834 * 89.99836 * 4 3 2 24 24 H 1.09002 * 109.47083 * 60.00069 * 1 2 3 25 25 H 1.09004 * 109.46817 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46843 * 300.00086 * 1 2 3 27 27 H 1.09003 * 109.46968 * 240.00150 * 2 1 3 28 28 H 1.08995 * 109.46736 * 120.00079 * 2 1 3 29 29 H 1.09003 * 109.47280 * 60.00341 * 3 2 1 30 30 H 1.08995 * 109.47583 * 299.99560 * 3 2 1 31 31 H 1.08002 * 119.84543 * 359.97159 * 5 4 3 32 32 H 1.07999 * 119.92196 * 179.97438 * 6 5 4 33 33 H 1.07995 * 120.08209 * 180.27907 * 7 6 5 34 34 H 1.08004 * 119.99663 * 179.45331 * 9 8 7 35 35 H 0.96999 * 119.99959 * 0.02562 * 11 10 9 36 36 H 1.09004 * 109.47389 * 299.99379 * 14 12 11 37 37 H 1.09003 * 109.47590 * 60.00261 * 14 12 11 38 38 H 1.09005 * 109.47091 * 179.97438 * 14 12 11 39 39 H 0.96996 * 119.99768 * 180.02562 * 18 17 15 40 40 H 1.07994 * 120.08045 * 0.05062 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2368 1.4422 1.2003 6 6 5.6203 1.4417 1.2104 7 6 6.3220 1.4353 0.0226 8 6 5.6324 1.4409 -1.1919 9 6 6.3757 1.4397 -2.4659 10 7 7.6731 1.4389 -2.4601 11 7 8.3790 1.4383 -3.6702 12 6 9.8440 1.4368 -3.6636 13 1 10.2039 1.9501 -2.7720 14 6 10.3525 -0.0062 -3.6614 15 6 10.3526 2.1468 -4.8918 16 1 9.6544 2.5583 -5.6056 17 6 11.7093 2.2718 -5.1035 18 7 12.1531 2.8919 -6.1751 19 14 12.9168 1.5606 -3.8684 20 1 13.2393 0.1599 -4.2417 21 1 14.1607 2.3719 -3.8689 22 1 12.3106 1.5849 -2.5130 23 6 4.2354 1.4424 -1.1945 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6927 1.4423 2.1332 32 1 6.1522 1.4419 2.1503 33 1 7.4019 1.4304 0.0319 34 1 5.8398 1.4351 -3.4036 35 1 7.8978 1.4388 -4.5124 36 1 9.9847 -0.5198 -2.7731 37 1 9.9927 -0.5197 -4.5531 38 1 11.4425 -0.0074 -3.6569 39 1 13.1075 2.9795 -6.3242 40 1 3.6958 1.4430 -2.1299 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774395044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:22 Heat of formation + Delta-G solvation = 48.808082 kcal Electronic energy + Delta-G solvation = -18108.953623 eV Core-core repulsion = 15309.852613 eV Total energy + Delta-G solvation = -2799.101010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.31783 -36.69190 -35.30677 -34.06044 -32.01555 -31.04138 -30.68476 -27.69326 -26.40994 -25.16353 -23.27242 -22.33696 -21.40614 -20.44474 -19.55378 -17.14967 -16.44177 -16.08593 -15.52708 -15.28710 -14.92245 -14.15357 -13.96542 -13.77488 -13.53673 -13.20219 -13.02959 -12.79162 -12.28843 -12.24324 -12.20145 -11.97909 -11.65882 -11.41362 -11.16242 -10.94347 -10.86835 -10.78222 -10.69433 -10.23228 -9.73319 -9.57077 -9.23500 -8.90428 -8.69188 -8.58751 -6.97192 -6.22404 -4.24852 1.18431 1.51712 2.94297 3.20487 3.31611 3.33714 3.61052 4.07119 4.28250 4.63952 4.72977 4.89903 5.00498 5.04160 5.11704 5.24454 5.27357 5.34194 5.52374 5.59333 5.61828 5.66876 5.77451 5.85675 5.94044 6.08184 6.12477 6.18063 6.26758 6.35470 6.48815 6.54995 6.66680 6.70900 6.76272 6.97968 7.12712 7.31334 7.49421 7.94613 8.38170 8.77787 9.13134 9.37766 10.90121 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041177 B = 0.003190 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.820933 B = 8775.128047 C = 9092.059282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.078 4.078 4 C -0.085 4.085 5 C -0.127 4.127 6 C -0.118 4.118 7 C -0.104 4.104 8 C -0.005 4.005 9 C -0.006 4.006 10 N -0.197 5.197 11 N -0.618 5.618 12 C 0.271 3.729 13 H 0.042 0.958 14 C -0.165 4.165 15 C -0.534 4.534 16 H 0.078 0.922 17 C 0.077 3.923 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.263 1.263 23 C -0.110 4.110 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.376 0.624 36 H 0.034 0.966 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.268 0.732 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.923 -4.913 13.329 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.115 4.115 4 C -0.085 4.085 5 C -0.147 4.147 6 C -0.136 4.136 7 C -0.125 4.125 8 C -0.008 4.008 9 C -0.214 4.214 10 N -0.009 5.009 11 N -0.354 5.354 12 C 0.167 3.833 13 H 0.060 0.940 14 C -0.224 4.224 15 C -0.573 4.573 16 H 0.096 0.904 17 C -0.126 4.126 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.188 1.188 23 C -0.131 4.131 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.148 0.852 34 H 0.121 0.879 35 H 0.213 0.787 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.697 -4.844 13.748 22.927 hybrid contribution 0.054 -0.370 -0.561 0.674 sum -17.643 -5.214 13.187 22.635 Atomic orbital electron populations 1.21797 0.95892 1.01589 1.01755 1.21520 0.95412 0.96298 1.02494 1.20604 0.91074 0.97189 1.02680 1.19677 0.95286 1.00529 0.93015 1.20979 0.94201 1.02313 0.97159 1.21052 0.94101 1.00467 0.97957 1.21378 1.00661 0.99050 0.91382 1.18428 0.92189 0.98657 0.91501 1.23531 0.90883 1.11044 0.95937 1.73875 1.09020 1.04270 1.13782 1.48609 1.05995 1.80780 0.99989 1.18872 0.74004 0.91979 0.98458 0.94039 1.22590 0.99728 1.00073 0.99964 1.21058 0.92966 1.36871 1.06360 0.90361 1.24834 0.97979 0.94552 0.95267 1.69871 1.14707 1.41902 1.26497 0.86825 0.80367 0.78435 0.82470 1.20298 1.22123 1.18830 1.20989 0.92769 1.01734 0.97590 0.92711 0.92792 0.92811 0.91748 0.91909 0.91247 0.91111 0.86667 0.86291 0.85223 0.87901 0.78733 0.94736 0.92899 0.93504 0.92239 0.86116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.93 5.92 -26.73 -0.16 -1.08 16 3 C -0.08 -0.65 5.34 -27.88 -0.15 -0.80 16 4 C -0.08 -0.93 5.13 -104.68 -0.54 -1.46 16 5 C -0.13 -1.39 9.69 -39.49 -0.38 -1.77 16 6 C -0.12 -1.41 10.03 -39.64 -0.40 -1.81 16 7 C -0.10 -1.50 9.58 -39.15 -0.38 -1.88 16 8 C -0.01 -0.08 5.87 -105.05 -0.62 -0.70 16 9 C -0.01 -0.09 10.75 -14.66 -0.16 -0.25 16 10 N -0.20 -3.88 10.61 32.16 0.34 -3.54 16 11 N -0.62 -13.24 6.10 -5.88 -0.04 -13.27 16 12 C 0.27 6.52 2.82 -69.08 -0.20 6.32 16 13 H 0.04 1.06 7.20 -51.93 -0.37 0.68 16 14 C -0.16 -3.66 9.00 37.16 0.33 -3.33 16 15 C -0.53 -14.71 9.32 -34.44 -0.32 -15.03 16 16 H 0.08 2.31 8.03 -52.49 -0.42 1.89 16 17 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 18 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 19 Si 0.89 21.51 24.37 -169.99 -4.14 17.36 16 20 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 23 C -0.11 -1.35 9.44 -39.15 -0.37 -1.72 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.13 1.99 7.55 -52.49 -0.40 1.59 16 34 H 0.10 1.52 8.02 -52.48 -0.42 1.10 16 35 H 0.38 7.58 8.58 -182.60 -1.57 6.01 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -29.62 332.09 -8.71 -38.33 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.60 Total: 4.03 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -3.05 Total: -22.04 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 1.08 Total: -42.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.36 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.62 -8.71 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774395044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.140 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds