Wall clock time and date at job start Mon Mar 30 2020 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46716 * 2 1 4 4 C 1.50706 * 109.47032 * 179.97438 * 3 2 1 5 5 C 1.38383 * 119.92342 * 270.02757 * 4 3 2 6 6 C 1.38354 * 120.31670 * 179.97438 * 5 4 3 7 7 C 1.37955 * 120.15452 * 359.69539 * 6 5 4 8 8 C 1.39661 * 119.83838 * 0.55242 * 7 6 5 9 9 C 1.47496 * 120.15356 * 179.74776 * 8 7 6 10 10 N 1.29741 * 120.00361 * 359.72033 * 9 8 7 11 11 N 1.40095 * 120.00346 * 180.02562 * 10 9 8 12 12 C 1.46507 * 119.99857 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.47290 * 330.00145 * 12 11 10 14 14 C 1.52998 * 109.46839 * 90.00109 * 12 11 10 15 15 C 1.50703 * 109.46830 * 209.99830 * 12 11 10 16 16 H 1.08001 * 120.00074 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99483 * 179.97438 * 15 12 11 18 18 N 1.31522 * 119.99645 * 180.02562 * 17 15 12 19 19 Si 1.86796 * 120.00237 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47068 * 90.00299 * 19 17 15 21 21 H 1.48511 * 109.46852 * 209.99972 * 19 17 15 22 22 H 1.48500 * 109.47158 * 329.99610 * 19 17 15 23 23 C 1.37918 * 119.91834 * 89.99836 * 4 3 2 24 24 H 1.09002 * 109.47083 * 60.00069 * 1 2 3 25 25 H 1.09004 * 109.46817 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46843 * 300.00086 * 1 2 3 27 27 H 1.09003 * 109.46968 * 240.00150 * 2 1 3 28 28 H 1.08995 * 109.46736 * 120.00079 * 2 1 3 29 29 H 1.09003 * 109.47280 * 60.00341 * 3 2 1 30 30 H 1.08995 * 109.47583 * 299.99560 * 3 2 1 31 31 H 1.08002 * 119.84543 * 359.97159 * 5 4 3 32 32 H 1.07999 * 119.92196 * 179.97438 * 6 5 4 33 33 H 1.07995 * 120.08209 * 180.27907 * 7 6 5 34 34 H 1.08004 * 119.99663 * 179.45331 * 9 8 7 35 35 H 0.96999 * 119.99959 * 0.02562 * 11 10 9 36 36 H 1.09004 * 109.47389 * 299.99379 * 14 12 11 37 37 H 1.09003 * 109.47590 * 60.00261 * 14 12 11 38 38 H 1.09005 * 109.47091 * 179.97438 * 14 12 11 39 39 H 0.96996 * 119.99768 * 180.02562 * 18 17 15 40 40 H 1.07994 * 120.08045 * 0.05062 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2368 1.4422 1.2003 6 6 5.6203 1.4417 1.2104 7 6 6.3220 1.4353 0.0226 8 6 5.6324 1.4409 -1.1919 9 6 6.3757 1.4397 -2.4659 10 7 7.6731 1.4389 -2.4601 11 7 8.3790 1.4383 -3.6702 12 6 9.8440 1.4368 -3.6636 13 1 10.2039 1.9501 -2.7720 14 6 10.3525 -0.0062 -3.6614 15 6 10.3526 2.1468 -4.8918 16 1 9.6544 2.5583 -5.6056 17 6 11.7093 2.2718 -5.1035 18 7 12.1531 2.8919 -6.1751 19 14 12.9168 1.5606 -3.8684 20 1 13.2393 0.1599 -4.2417 21 1 14.1607 2.3719 -3.8689 22 1 12.3106 1.5849 -2.5130 23 6 4.2354 1.4424 -1.1945 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6927 1.4423 2.1332 32 1 6.1522 1.4419 2.1503 33 1 7.4019 1.4304 0.0319 34 1 5.8398 1.4351 -3.4036 35 1 7.8978 1.4388 -4.5124 36 1 9.9847 -0.5198 -2.7731 37 1 9.9927 -0.5197 -4.5531 38 1 11.4425 -0.0074 -3.6569 39 1 13.1075 2.9795 -6.3242 40 1 3.6958 1.4430 -2.1299 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774395044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:21 Heat of formation + Delta-G solvation = 32.057476 kcal Electronic energy + Delta-G solvation = -18109.679984 eV Core-core repulsion = 15309.852613 eV Total energy + Delta-G solvation = -2799.827371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28543 -38.20624 -36.35034 -35.50464 -33.82863 -32.03940 -31.86223 -29.15250 -27.21268 -27.13783 -24.52057 -23.16802 -22.30864 -22.14339 -20.73042 -18.97752 -17.59311 -17.56660 -17.11175 -16.19826 -16.05854 -15.42981 -15.13537 -14.94028 -14.62669 -14.55360 -14.23874 -14.11582 -14.10213 -13.53618 -13.31217 -12.84781 -12.80573 -12.73746 -12.53248 -12.13814 -12.04715 -11.93670 -11.64296 -11.52782 -11.42864 -11.33075 -10.96409 -10.85774 -9.98840 -9.55951 -8.46580 -8.38637 -6.46437 0.09949 0.56137 1.28967 1.35445 1.45869 1.72578 2.09332 2.26038 2.96328 3.04366 3.84342 3.88631 4.01590 4.26440 4.31937 4.34869 4.39623 4.45950 4.52818 4.62341 4.63970 4.71651 4.77133 4.82179 4.95323 4.97499 5.08722 5.11020 5.19028 5.24057 5.35201 5.36755 5.46829 5.49440 5.53844 5.68382 5.76775 5.81551 6.06318 6.16803 6.44456 6.60420 7.20112 7.65659 8.76909 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041177 B = 0.003190 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.820933 B = 8775.128047 C = 9092.059282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.075 4.075 4 C -0.085 4.085 5 C -0.117 4.117 6 C -0.122 4.122 7 C -0.120 4.120 8 C -0.039 4.039 9 C 0.030 3.970 10 N -0.239 5.239 11 N -0.639 5.639 12 C 0.280 3.720 13 H 0.026 0.974 14 C -0.157 4.157 15 C -0.538 4.538 16 H 0.042 0.958 17 C 0.023 3.977 18 N -0.939 5.939 19 Si 0.950 3.050 20 H -0.259 1.259 21 H -0.292 1.292 22 H -0.252 1.252 23 C -0.106 4.106 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.375 0.625 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.271 0.729 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.046 -5.894 15.879 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.112 4.112 4 C -0.085 4.085 5 C -0.136 4.136 6 C -0.140 4.140 7 C -0.140 4.140 8 C -0.041 4.041 9 C -0.180 4.180 10 N -0.048 5.048 11 N -0.375 5.375 12 C 0.175 3.825 13 H 0.044 0.956 14 C -0.216 4.216 15 C -0.577 4.577 16 H 0.060 0.940 17 C -0.176 4.176 18 N -0.578 5.578 19 Si 0.776 3.224 20 H -0.185 1.185 21 H -0.219 1.219 22 H -0.176 1.176 23 C -0.126 4.126 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.213 0.787 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.841 -5.836 16.310 26.339 hybrid contribution 0.371 -0.010 -1.241 1.295 sum -19.469 -5.846 15.069 25.304 Atomic orbital electron populations 1.21780 0.94848 1.01973 1.02263 1.21497 0.96308 0.95730 1.02051 1.20651 0.88989 0.97788 1.03814 1.20031 0.96844 0.99193 0.92479 1.21388 0.93834 0.99883 0.98469 1.21301 0.94878 0.99932 0.97866 1.21400 1.00096 1.00044 0.92492 1.18506 0.93205 1.01756 0.90637 1.24115 0.90349 1.05840 0.97694 1.73928 1.10256 1.08092 1.12574 1.48221 1.05043 1.83545 1.00709 1.18496 0.75913 0.92458 0.95614 0.95612 1.22464 0.99389 0.98831 1.00901 1.21300 0.92710 1.36730 1.06933 0.94022 1.25691 0.99932 0.94896 0.97097 1.70004 1.15340 1.43772 1.28682 0.85838 0.77736 0.78381 0.80430 1.18494 1.21934 1.17578 1.21221 0.91754 1.00506 0.99130 0.92479 0.92540 0.92048 0.92619 0.91997 0.89737 0.90455 0.83720 0.84264 0.87041 0.86310 0.78733 0.92978 0.92742 0.93765 0.91982 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.47 5.92 30.60 0.18 -1.29 16 3 C -0.08 -0.98 5.34 29.85 0.16 -0.82 16 4 C -0.09 -1.59 5.13 -19.90 -0.10 -1.69 16 5 C -0.12 -2.13 9.69 22.33 0.22 -1.91 16 6 C -0.12 -2.64 10.03 22.23 0.22 -2.42 16 7 C -0.12 -3.35 9.58 22.55 0.22 -3.14 16 8 C -0.04 -1.09 5.87 -20.14 -0.12 -1.21 16 9 C 0.03 0.98 10.75 87.44 0.94 1.92 16 10 N -0.24 -9.53 10.61 -52.16 -0.55 -10.08 16 11 N -0.64 -28.08 6.10 -172.51 -1.05 -29.13 16 12 C 0.28 13.73 2.82 44.24 0.12 13.86 16 13 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 14 C -0.16 -6.88 9.00 71.98 0.65 -6.23 16 15 C -0.54 -30.74 9.32 25.60 0.24 -30.50 16 16 H 0.04 2.61 8.03 -2.91 -0.02 2.58 16 17 C 0.02 1.33 5.45 84.65 0.46 1.79 16 18 N -0.94 -57.76 13.96 21.45 0.30 -57.46 16 19 Si 0.95 44.47 24.37 68.60 1.67 46.14 16 20 H -0.26 -11.38 6.87 99.48 0.68 -10.70 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.25 -11.22 6.53 99.48 0.65 -10.58 16 23 C -0.11 -2.35 9.44 22.55 0.21 -2.13 16 24 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 30 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.11 3.48 7.55 -2.91 -0.02 3.45 16 34 H 0.12 3.41 8.02 -2.91 -0.02 3.38 16 35 H 0.38 15.75 8.58 -213.32 -1.83 13.92 16 36 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.04 1.93 3.27 -2.38 -0.01 1.92 16 39 H 0.27 15.52 8.31 -92.71 -0.77 14.74 16 40 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -65.54 332.09 3.58 -61.96 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -0.90 Total: 23.13 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 4.11 Total: -34.55 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -1.31 Total: -96.68 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.67 Total: 46.14 kcal Total: -65.54 3.58 -61.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774395044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.014 kcal (2) G-P(sol) polarization free energy of solvation -65.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds