Wall clock time and date at job start Mon Mar 30 2020 07:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46814 * 2 1 4 4 C 1.52998 * 109.47170 * 240.00414 * 2 1 3 5 5 C 1.50695 * 109.47483 * 119.99827 * 2 1 3 6 6 N 1.29808 * 121.32201 * 0.64980 * 5 2 1 7 7 C 1.45484 * 123.73309 * 182.04178 * 6 5 2 8 8 C 1.52956 * 113.28893 * 325.49140 * 7 6 5 9 9 C 1.50770 * 108.43835 * 44.75339 * 8 7 6 10 10 C 1.37950 * 120.29896 * 330.67717 * 9 8 7 11 11 C 1.44792 * 106.68982 * 179.97438 * 10 9 8 12 12 C 1.35149 * 106.01871 * 359.87766 * 11 10 9 13 13 N 1.33442 * 131.52048 * 150.33762 * 9 8 7 14 14 C 1.46500 * 124.92909 * 0.34449 * 13 9 8 15 15 C 1.50706 * 109.47299 * 84.71244 * 14 13 9 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 H 1.08999 * 109.47359 * 300.00147 * 1 2 3 24 24 H 1.09006 * 109.47060 * 60.00235 * 1 2 3 25 25 H 1.08999 * 109.46690 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46938 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47114 * 299.99731 * 3 2 1 28 28 H 1.08999 * 109.47277 * 59.99803 * 3 2 1 29 29 H 1.09006 * 109.46621 * 299.99200 * 4 2 1 30 30 H 1.08994 * 109.47470 * 59.99381 * 4 2 1 31 31 H 1.09001 * 109.47253 * 179.97438 * 4 2 1 32 32 H 1.09002 * 108.72062 * 204.51666 * 7 6 5 33 33 H 1.08997 * 108.72350 * 86.47830 * 7 6 5 34 34 H 1.09003 * 109.64299 * 285.07162 * 8 7 6 35 35 H 1.08994 * 109.63892 * 164.43921 * 8 7 6 36 36 H 1.07998 * 126.99493 * 179.89251 * 11 10 9 37 37 H 1.08005 * 125.51858 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.47078 * 324.72005 * 14 13 9 39 39 H 1.08993 * 109.47364 * 204.71777 * 14 13 9 40 40 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0324 -0.7103 1.2304 6 7 1.2120 -1.2241 2.0953 7 6 1.6379 -1.8826 3.3207 8 6 2.9515 -2.6513 3.1690 9 6 3.9261 -1.7854 2.4119 10 6 3.4695 -0.8624 1.4939 11 6 4.6385 -0.2033 0.9502 12 6 5.7028 -0.7617 1.5684 13 7 5.2580 -1.7121 2.4487 14 6 6.1200 -2.5340 3.3017 15 6 6.3920 -3.8508 2.6209 16 1 5.9656 -4.0547 1.6498 17 6 7.1849 -4.7950 3.2377 18 7 7.7084 -4.5446 4.4179 19 14 7.5225 -6.4269 2.3935 20 1 8.4011 -7.2577 3.2555 21 1 6.2400 -7.1388 2.1616 22 1 8.1947 -6.1812 1.0924 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6768 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7208 -1.2495 32 1 0.8593 -2.5788 3.6325 33 1 1.7614 -1.1288 4.0982 34 1 2.7745 -3.5737 2.6158 35 1 3.3560 -2.8832 4.1542 36 1 4.6564 0.5762 0.2029 37 1 6.7365 -0.5001 1.3968 38 1 5.6229 -2.7139 4.2549 39 1 7.0618 -2.0136 3.4756 40 1 7.5333 -3.6972 4.8562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821281966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:51 Heat of formation + Delta-G solvation = 38.463277 kcal Electronic energy + Delta-G solvation = -19848.764242 eV Core-core repulsion = 17049.214648 eV Total energy + Delta-G solvation = -2799.549595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87617 -37.85522 -35.43614 -33.91121 -31.42265 -30.27583 -28.07307 -27.29765 -27.05811 -26.21610 -23.56825 -22.90433 -21.62366 -20.18003 -18.68583 -17.27983 -16.60673 -16.25694 -15.07119 -14.51742 -14.29834 -14.11051 -13.92577 -13.63312 -13.52683 -13.19137 -12.74121 -12.36706 -12.10619 -11.99742 -11.90408 -11.68921 -11.63580 -11.39115 -11.35510 -11.14588 -10.84704 -10.82648 -10.53712 -10.44319 -10.25614 -9.74227 -9.10760 -8.70743 -8.65445 -7.77592 -7.19778 -6.70806 -4.48686 2.07067 3.06134 3.29370 3.29883 3.49024 3.73019 3.84654 4.30196 4.42806 4.95276 5.03326 5.16226 5.19492 5.28955 5.37441 5.54248 5.61089 5.71915 5.76548 5.81032 5.84617 5.96558 5.99491 6.03809 6.07152 6.12516 6.13542 6.27629 6.33029 6.36681 6.39358 6.50472 6.51610 6.61085 6.72936 7.06943 7.48506 7.54811 7.89921 7.98593 8.22794 8.44774 8.45746 9.22072 10.65700 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027820 B = 0.005395 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.230883 B = 5189.019127 C = 5322.820933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.012 4.012 3 C -0.139 4.139 4 C -0.136 4.136 5 C 0.276 3.724 6 N -0.564 5.564 7 C 0.063 3.937 8 C -0.072 4.072 9 C 0.065 3.935 10 C -0.244 4.244 11 C -0.169 4.169 12 C -0.023 4.023 13 N -0.387 5.387 14 C 0.215 3.785 15 C -0.620 4.620 16 H 0.060 0.940 17 C 0.027 3.973 18 N -0.899 5.899 19 Si 1.074 2.926 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 8.563 -6.962 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.013 4.013 3 C -0.197 4.197 4 C -0.194 4.194 5 C 0.090 3.910 6 N -0.273 5.273 7 C -0.067 4.067 8 C -0.111 4.111 9 C -0.059 4.059 10 C -0.253 4.253 11 C -0.194 4.194 12 C -0.153 4.153 13 N -0.055 5.055 14 C 0.096 3.904 15 C -0.658 4.658 16 H 0.078 0.922 17 C -0.178 4.178 18 N -0.534 5.534 19 Si 0.900 3.100 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.155 0.845 37 H 0.173 0.827 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.436 6.730 -6.262 13.174 hybrid contribution 0.389 1.257 0.116 1.321 sum -9.047 7.987 -6.146 13.543 Atomic orbital electron populations 1.21666 0.93494 1.02236 1.00861 1.19383 0.95943 0.94696 0.91297 1.21917 1.02199 0.94157 1.01466 1.21820 1.02079 1.00016 0.95485 1.22233 0.87120 0.89241 0.92451 1.71000 1.37927 1.14057 1.04300 1.21792 0.94517 0.97570 0.92833 1.20520 0.92861 0.97516 1.00213 1.20250 0.84522 1.00338 1.00826 1.19926 0.93350 1.05692 1.06358 1.21387 0.90569 1.03722 1.03745 1.21893 0.98996 0.96368 0.97994 1.43686 1.05108 1.26899 1.29798 1.19884 0.89364 0.91053 0.90090 1.22138 1.36189 1.00390 1.07047 0.92200 1.25932 0.92661 1.03600 0.95653 1.70853 1.42055 1.26212 1.14239 0.83454 0.76785 0.74410 0.75301 1.20352 1.21092 1.21057 0.92376 0.93345 0.92296 0.91420 0.92379 0.92755 0.92749 0.92411 0.91616 0.89725 0.91838 0.90194 0.90189 0.84498 0.82669 0.94722 0.94331 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 7.74 37.16 0.29 -1.26 16 2 C -0.01 -0.16 0.87 -155.66 -0.14 -0.30 16 3 C -0.14 -1.64 8.31 37.16 0.31 -1.33 16 4 C -0.14 -1.72 8.32 37.16 0.31 -1.41 16 5 C 0.28 4.71 5.72 -79.95 -0.46 4.25 16 6 N -0.56 -9.89 9.54 -55.71 -0.53 -10.42 16 7 C 0.06 1.06 6.95 -4.61 -0.03 1.03 16 8 C -0.07 -1.37 6.33 -27.87 -0.18 -1.54 16 9 C 0.06 1.36 6.74 -81.96 -0.55 0.81 16 10 C -0.24 -4.62 5.62 -103.91 -0.58 -5.21 16 11 C -0.17 -2.99 9.49 -38.09 -0.36 -3.35 16 12 C -0.02 -0.44 11.37 -16.36 -0.19 -0.63 16 13 N -0.39 -8.53 2.65 -113.40 -0.30 -8.83 16 14 C 0.22 5.25 4.96 -5.19 -0.03 5.23 16 15 C -0.62 -16.73 9.38 -34.44 -0.32 -17.05 16 16 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 17 C 0.03 0.74 5.46 -17.82 -0.10 0.64 16 18 N -0.90 -25.61 13.65 55.43 0.76 -24.85 16 19 Si 1.07 24.17 29.90 -169.99 -5.08 19.09 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 26 H 0.07 0.81 5.20 -51.93 -0.27 0.54 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.89 7.16 -51.93 -0.37 0.52 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 35 H 0.08 1.50 7.68 -51.93 -0.40 1.10 16 36 H 0.14 1.99 6.27 -52.49 -0.33 1.66 16 37 H 0.16 2.70 8.06 -52.48 -0.42 2.28 16 38 H 0.03 0.87 7.53 -51.93 -0.39 0.48 16 39 H 0.04 0.95 7.98 -51.93 -0.41 0.54 16 40 H 0.27 7.51 7.22 -40.82 -0.29 7.21 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -29.25 320.57 -8.67 -37.93 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.32 Total: 2.39 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -2.03 Total: -20.13 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.08 Total: -44.10 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.09 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.25 -8.67 -37.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821281966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.393 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds