Wall clock time and date at job start Mon Mar 30 2020 07:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46814 * 2 1 4 4 C 1.52998 * 109.47170 * 240.00414 * 2 1 3 5 5 C 1.50695 * 109.47483 * 119.99827 * 2 1 3 6 6 N 1.29808 * 121.32201 * 0.64980 * 5 2 1 7 7 C 1.45484 * 123.73309 * 182.04178 * 6 5 2 8 8 C 1.52956 * 113.28893 * 325.49140 * 7 6 5 9 9 C 1.50770 * 108.43835 * 44.75339 * 8 7 6 10 10 C 1.37950 * 120.29896 * 330.67717 * 9 8 7 11 11 C 1.44792 * 106.68982 * 179.97438 * 10 9 8 12 12 C 1.35149 * 106.01871 * 359.87766 * 11 10 9 13 13 N 1.33442 * 131.52048 * 150.33762 * 9 8 7 14 14 C 1.46500 * 124.92909 * 0.34449 * 13 9 8 15 15 C 1.50706 * 109.47299 * 84.71244 * 14 13 9 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 H 1.08999 * 109.47359 * 300.00147 * 1 2 3 24 24 H 1.09006 * 109.47060 * 60.00235 * 1 2 3 25 25 H 1.08999 * 109.46690 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46938 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47114 * 299.99731 * 3 2 1 28 28 H 1.08999 * 109.47277 * 59.99803 * 3 2 1 29 29 H 1.09006 * 109.46621 * 299.99200 * 4 2 1 30 30 H 1.08994 * 109.47470 * 59.99381 * 4 2 1 31 31 H 1.09001 * 109.47253 * 179.97438 * 4 2 1 32 32 H 1.09002 * 108.72062 * 204.51666 * 7 6 5 33 33 H 1.08997 * 108.72350 * 86.47830 * 7 6 5 34 34 H 1.09003 * 109.64299 * 285.07162 * 8 7 6 35 35 H 1.08994 * 109.63892 * 164.43921 * 8 7 6 36 36 H 1.07998 * 126.99493 * 179.89251 * 11 10 9 37 37 H 1.08005 * 125.51858 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.47078 * 324.72005 * 14 13 9 39 39 H 1.08993 * 109.47364 * 204.71777 * 14 13 9 40 40 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0324 -0.7103 1.2304 6 7 1.2120 -1.2241 2.0953 7 6 1.6379 -1.8826 3.3207 8 6 2.9515 -2.6513 3.1690 9 6 3.9261 -1.7854 2.4119 10 6 3.4695 -0.8624 1.4939 11 6 4.6385 -0.2033 0.9502 12 6 5.7028 -0.7617 1.5684 13 7 5.2580 -1.7121 2.4487 14 6 6.1200 -2.5340 3.3017 15 6 6.3920 -3.8508 2.6209 16 1 5.9656 -4.0547 1.6498 17 6 7.1849 -4.7950 3.2377 18 7 7.7084 -4.5446 4.4179 19 14 7.5225 -6.4269 2.3935 20 1 8.4011 -7.2577 3.2555 21 1 6.2400 -7.1388 2.1616 22 1 8.1947 -6.1812 1.0924 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6768 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7208 -1.2495 32 1 0.8593 -2.5788 3.6325 33 1 1.7614 -1.1288 4.0982 34 1 2.7745 -3.5737 2.6158 35 1 3.3560 -2.8832 4.1542 36 1 4.6564 0.5762 0.2029 37 1 6.7365 -0.5001 1.3968 38 1 5.6229 -2.7139 4.2549 39 1 7.0618 -2.0136 3.4756 40 1 7.5333 -3.6972 4.8562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821281966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:50 Heat of formation + Delta-G solvation = 22.930494 kcal Electronic energy + Delta-G solvation = -19849.437794 eV Core-core repulsion = 17049.214648 eV Total energy + Delta-G solvation = -2800.223147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.41478 -39.11928 -36.69371 -35.91123 -33.10383 -31.76040 -29.51521 -28.70060 -28.01139 -27.67471 -25.36185 -24.49080 -23.01308 -21.58976 -20.19864 -19.17721 -18.08165 -17.77702 -16.47557 -16.06401 -15.77439 -15.64709 -15.42754 -15.02249 -14.79849 -14.48883 -14.30203 -13.93330 -13.69066 -13.43838 -13.20337 -13.16441 -12.87164 -12.78577 -12.65480 -12.60417 -12.40586 -12.01373 -11.89391 -11.68367 -11.55381 -11.32271 -10.83383 -10.78143 -10.05073 -9.37889 -8.89919 -8.70954 -6.67971 0.63944 1.44963 1.51484 1.53571 1.73312 2.13322 2.38003 2.42554 2.92394 3.20468 3.64984 3.77667 3.91362 4.05368 4.20337 4.22264 4.26962 4.31714 4.36765 4.43057 4.54397 4.68433 4.74506 4.80983 4.85244 4.92693 4.94219 5.04041 5.10996 5.13613 5.15645 5.22604 5.37119 5.47991 5.55090 5.64135 5.73709 5.82194 6.02322 6.23328 6.40669 6.48686 7.09269 7.10792 8.48408 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027820 B = 0.005395 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.230883 B = 5189.019127 C = 5322.820933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.013 4.013 3 C -0.136 4.136 4 C -0.133 4.133 5 C 0.270 3.730 6 N -0.572 5.572 7 C 0.065 3.935 8 C -0.069 4.069 9 C 0.025 3.975 10 C -0.241 4.241 11 C -0.151 4.151 12 C -0.045 4.045 13 N -0.405 5.405 14 C 0.228 3.772 15 C -0.628 4.628 16 H 0.044 0.956 17 C -0.015 4.015 18 N -0.919 5.919 19 Si 1.117 2.883 20 H -0.275 1.275 21 H -0.273 1.273 22 H -0.269 1.269 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.174 0.826 37 H 0.171 0.829 38 H 0.021 0.979 39 H 0.031 0.969 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.544 9.552 -9.006 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.014 4.014 3 C -0.194 4.194 4 C -0.191 4.191 5 C 0.083 3.917 6 N -0.280 5.280 7 C -0.065 4.065 8 C -0.109 4.109 9 C -0.097 4.097 10 C -0.251 4.251 11 C -0.175 4.175 12 C -0.174 4.174 13 N -0.074 5.074 14 C 0.107 3.893 15 C -0.666 4.666 16 H 0.063 0.937 17 C -0.215 4.215 18 N -0.555 5.555 19 Si 0.937 3.063 20 H -0.200 1.200 21 H -0.199 1.199 22 H -0.194 1.194 23 H 0.069 0.931 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.191 0.809 37 H 0.188 0.812 38 H 0.038 0.962 39 H 0.049 0.951 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.443 7.750 -8.313 15.435 hybrid contribution 0.645 1.020 0.736 1.414 sum -9.798 8.770 -7.577 15.177 Atomic orbital electron populations 1.21623 0.92491 1.01701 1.01898 1.19560 0.96749 0.95431 0.89704 1.21912 1.01956 0.92852 1.02685 1.21814 1.01388 0.99576 0.96320 1.22870 0.86075 0.89070 0.93641 1.71059 1.38001 1.14346 1.04615 1.21844 0.93782 0.97823 0.93014 1.20524 0.93806 0.97213 0.99316 1.20744 0.84448 1.02016 1.02491 1.20348 0.94843 1.04685 1.05209 1.21792 0.89153 1.03386 1.03195 1.22403 1.00539 0.96351 0.98088 1.43614 1.05336 1.27786 1.30693 1.19491 0.89312 0.90606 0.89875 1.22305 1.36026 1.01733 1.06495 0.93715 1.27283 0.92097 1.06617 0.95509 1.70954 1.43263 1.26073 1.15169 0.82919 0.77322 0.71001 0.75034 1.20014 1.19864 1.19436 0.93128 0.90499 0.93626 0.91740 0.89472 0.93284 0.94151 0.89313 0.92626 0.87807 0.91530 0.91488 0.91061 0.80889 0.81176 0.96151 0.95068 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 7.74 71.98 0.56 -2.07 16 2 C -0.01 -0.33 0.87 -52.93 -0.05 -0.37 16 3 C -0.14 -2.71 8.31 71.98 0.60 -2.11 16 4 C -0.13 -2.99 8.32 71.98 0.60 -2.39 16 5 C 0.27 8.84 5.72 45.12 0.26 9.10 16 6 N -0.57 -19.52 9.54 -330.18 -3.15 -22.67 16 7 C 0.07 2.19 6.95 86.56 0.60 2.79 16 8 C -0.07 -2.71 6.33 29.86 0.19 -2.52 16 9 C 0.03 1.08 6.74 42.27 0.28 1.37 16 10 C -0.24 -8.95 5.62 -19.40 -0.11 -9.06 16 11 C -0.15 -5.07 9.49 23.23 0.22 -4.85 16 12 C -0.05 -1.76 11.37 83.18 0.95 -0.81 16 13 N -0.40 -18.23 2.65 -512.70 -1.36 -19.59 16 14 C 0.23 11.53 4.96 85.64 0.42 11.95 16 15 C -0.63 -34.68 9.38 25.60 0.24 -34.44 16 16 H 0.04 2.56 7.81 -2.91 -0.02 2.54 16 17 C -0.01 -0.80 5.46 84.65 0.46 -0.34 16 18 N -0.92 -53.26 13.65 21.45 0.29 -52.97 16 19 Si 1.12 48.48 29.90 68.60 2.05 50.53 16 20 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 24 H 0.08 1.24 8.14 -2.38 -0.02 1.23 16 25 H 0.04 1.11 8.09 -2.39 -0.02 1.09 16 26 H 0.06 1.31 5.20 -2.39 -0.01 1.30 16 27 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.36 7.16 -2.39 -0.02 1.34 16 32 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.07 2.82 7.68 -2.39 -0.02 2.80 16 36 H 0.17 4.44 6.27 -2.91 -0.02 4.42 16 37 H 0.17 5.83 8.06 -2.91 -0.02 5.81 16 38 H 0.02 1.08 7.53 -2.39 -0.02 1.06 16 39 H 0.03 1.61 7.98 -2.39 -0.02 1.59 16 40 H 0.26 15.02 7.22 -92.71 -0.67 14.35 16 Total: -1.00 -63.33 320.57 4.17 -59.16 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 1.11 Total: 19.31 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 5.23 Total: -33.77 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -4.22 Total: -95.23 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.05 Total: 50.53 kcal Total: -63.33 4.17 -59.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821281966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.089 kcal (2) G-P(sol) polarization free energy of solvation -63.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds