Wall clock time and date at job start Mon Mar 30 2020 07:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47293 * 2 1 4 4 C 1.53003 * 109.47177 * 120.00176 * 2 1 3 5 5 C 1.50695 * 109.47483 * 64.99963 * 4 2 1 6 6 N 1.29808 * 121.32201 * 0.64980 * 5 4 2 7 7 C 1.45484 * 123.73309 * 182.04178 * 6 5 4 8 8 C 1.52956 * 113.28893 * 325.49140 * 7 6 5 9 9 C 1.50770 * 108.43835 * 44.75339 * 8 7 6 10 10 C 1.37950 * 120.29896 * 330.67717 * 9 8 7 11 11 C 1.44792 * 106.68982 * 179.97438 * 10 9 8 12 12 C 1.35149 * 106.01871 * 359.87766 * 11 10 9 13 13 N 1.33442 * 131.52048 * 150.33762 * 9 8 7 14 14 C 1.46500 * 124.92909 * 0.34449 * 13 9 8 15 15 C 1.50706 * 109.47299 * 84.71244 * 14 13 9 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 H 1.09006 * 109.47239 * 299.99936 * 1 2 3 24 24 H 1.09001 * 109.47259 * 59.99840 * 1 2 3 25 25 H 1.08999 * 109.47213 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47586 * 239.99874 * 2 1 3 27 27 H 1.08997 * 109.47901 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47098 * 300.00258 * 3 2 1 29 29 H 1.09006 * 109.46926 * 59.99872 * 3 2 1 30 30 H 1.09006 * 109.46695 * 304.99704 * 4 2 1 31 31 H 1.09002 * 109.46991 * 185.00349 * 4 2 1 32 32 H 1.09002 * 108.72062 * 204.51666 * 7 6 5 33 33 H 1.08997 * 108.72350 * 86.47830 * 7 6 5 34 34 H 1.09003 * 109.64299 * 285.07162 * 8 7 6 35 35 H 1.08994 * 109.63892 * 164.43921 * 8 7 6 36 36 H 1.07997 * 126.99189 * 179.85695 * 11 10 9 37 37 H 1.08005 * 125.51858 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.47078 * 324.72005 * 14 13 9 39 39 H 1.08993 * 109.47364 * 204.71777 * 14 13 9 40 40 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 -2.1733 1.1889 6 7 0.9779 -2.6496 0.1800 7 6 0.5295 -4.0305 0.0873 8 6 1.5002 -5.0256 0.7253 9 6 1.9416 -4.4741 2.0573 10 6 1.9991 -3.1110 2.2616 11 6 2.4523 -2.9133 3.6225 12 6 2.6316 -4.1492 4.1391 13 7 2.3175 -5.0803 3.1850 14 6 2.3906 -6.5314 3.3731 15 6 3.7191 -7.0366 2.8721 16 1 4.4372 -6.3458 2.4556 17 6 4.0177 -8.3806 2.9453 18 7 3.1453 -9.2210 3.4574 19 14 5.6647 -9.0067 2.3249 20 1 5.7412 -10.4767 2.5210 21 1 5.8013 -8.6922 0.8800 22 1 6.7607 -8.3488 3.0805 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 3.1263 -0.6443 1.2952 32 1 0.4057 -4.2882 -0.9646 33 1 -0.4374 -4.1185 0.5826 34 1 2.3673 -5.1580 0.0781 35 1 0.9997 -5.9825 0.8726 36 1 2.6143 -1.9700 4.1228 37 1 2.9673 -4.3673 5.1423 38 1 1.5859 -7.0110 2.8158 39 1 2.2888 -6.7660 4.4326 40 1 2.2902 -8.8960 3.7798 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821283005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:53 Heat of formation + Delta-G solvation = 36.401392 kcal Electronic energy + Delta-G solvation = -19409.030702 eV Core-core repulsion = 16609.391697 eV Total energy + Delta-G solvation = -2799.639005 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82301 -37.60461 -35.39759 -33.92214 -31.89626 -30.48104 -28.68946 -26.99499 -26.71081 -26.25365 -23.25439 -22.69379 -21.21652 -20.01966 -18.83274 -17.37275 -16.77794 -16.32305 -15.35943 -14.58696 -14.46260 -14.05776 -13.91973 -13.62840 -13.62695 -13.07089 -12.76570 -12.59426 -12.18967 -12.15066 -12.00283 -11.67776 -11.66187 -11.49542 -11.23047 -10.91978 -10.83768 -10.71131 -10.58582 -10.45418 -10.25717 -9.66675 -9.09239 -8.70858 -8.59596 -7.78899 -7.20354 -6.71186 -4.49094 2.05796 3.05575 3.29326 3.29815 3.48987 3.72464 3.83861 4.30040 4.56898 4.89215 5.02794 5.13074 5.15997 5.24153 5.34519 5.56162 5.62387 5.69952 5.71681 5.78355 5.82798 5.88576 5.96571 6.01673 6.04685 6.10410 6.16704 6.25344 6.31681 6.36221 6.37889 6.50787 6.59031 6.67422 6.70061 7.08584 7.47908 7.54371 7.89381 7.97780 8.22290 8.43537 8.45134 9.21721 10.65399 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.030884 B = 0.004644 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.394291 B = 6027.857821 C = 6118.058256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.149 4.149 4 C -0.061 4.061 5 C 0.267 3.733 6 N -0.558 5.558 7 C 0.062 3.938 8 C -0.072 4.072 9 C 0.067 3.933 10 C -0.252 4.252 11 C -0.169 4.169 12 C -0.023 4.023 13 N -0.387 5.387 14 C 0.215 3.785 15 C -0.620 4.620 16 H 0.060 0.940 17 C 0.027 3.973 18 N -0.899 5.899 19 Si 1.074 2.926 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.040 0.960 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 14.498 -3.752 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.206 4.206 4 C -0.099 4.099 5 C 0.081 3.919 6 N -0.269 5.269 7 C -0.068 4.068 8 C -0.111 4.111 9 C -0.057 4.057 10 C -0.262 4.262 11 C -0.194 4.194 12 C -0.152 4.152 13 N -0.055 5.055 14 C 0.096 3.904 15 C -0.658 4.658 16 H 0.078 0.922 17 C -0.178 4.178 18 N -0.534 5.534 19 Si 0.901 3.099 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.153 0.847 37 H 0.174 0.826 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.847 12.892 -4.721 14.022 hybrid contribution -0.586 0.598 1.113 1.393 sum -3.433 13.491 -3.608 14.381 Atomic orbital electron populations 1.21927 0.95188 1.03449 0.99918 1.20885 0.96361 0.94539 0.98292 1.21894 1.00706 0.96683 1.01358 1.20544 1.01159 0.89257 0.98893 1.22299 0.89018 0.93621 0.86956 1.71022 1.15987 1.14625 1.25289 1.21797 0.97222 0.87285 1.00521 1.20519 1.00208 0.99156 0.91203 1.20261 1.03478 0.92018 0.89973 1.20018 1.17593 0.92204 0.96358 1.21320 1.07827 0.96170 0.94061 1.21878 1.09828 0.87930 0.95612 1.43699 1.44724 1.08481 1.08615 1.19890 0.99344 0.72902 0.98281 1.22142 1.01067 0.96102 1.46507 0.92183 1.25937 1.04703 0.92694 0.94510 1.70853 1.08150 1.37542 1.36812 0.83452 0.73675 0.76423 0.76387 1.20348 1.21078 1.21051 0.94057 0.93881 0.90202 0.90598 0.92955 0.92998 0.92982 0.90030 0.89985 0.89728 0.91868 0.90166 0.90219 0.84663 0.82623 0.94690 0.94315 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.93 37.16 0.33 -1.44 16 2 C -0.08 -0.97 2.56 -90.62 -0.23 -1.20 16 3 C -0.15 -1.43 9.19 37.16 0.34 -1.09 16 4 C -0.06 -0.79 5.12 -27.88 -0.14 -0.93 16 5 C 0.27 4.43 6.62 -79.95 -0.53 3.90 16 6 N -0.56 -9.31 7.44 -55.71 -0.41 -9.72 16 7 C 0.06 1.01 6.95 -4.61 -0.03 0.98 16 8 C -0.07 -1.34 6.33 -27.87 -0.18 -1.52 16 9 C 0.07 1.40 6.74 -81.96 -0.55 0.85 16 10 C -0.25 -4.80 6.18 -103.91 -0.64 -5.45 16 11 C -0.17 -3.02 11.09 -38.09 -0.42 -3.45 16 12 C -0.02 -0.45 11.37 -16.36 -0.19 -0.63 16 13 N -0.39 -8.57 2.65 -113.40 -0.30 -8.87 16 14 C 0.21 5.25 4.96 -5.19 -0.03 5.23 16 15 C -0.62 -16.76 9.38 -34.44 -0.32 -17.08 16 16 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 17 C 0.03 0.74 5.46 -17.82 -0.10 0.64 16 18 N -0.90 -25.61 13.65 55.43 0.76 -24.85 16 19 Si 1.07 24.15 29.90 -169.99 -5.08 19.07 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 1.12 5.83 -51.93 -0.30 0.82 16 26 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.08 1.48 7.68 -51.93 -0.40 1.08 16 36 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 37 H 0.16 2.73 8.06 -52.48 -0.42 2.30 16 38 H 0.04 0.88 7.53 -51.93 -0.39 0.48 16 39 H 0.04 0.96 7.98 -51.93 -0.41 0.54 16 40 H 0.27 7.51 7.22 -40.82 -0.29 7.21 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -28.99 325.37 -9.32 -38.31 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.49 Total: 2.34 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -2.69 Total: -21.19 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.04 Total: -43.44 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.08 Total: 19.07 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.99 -9.32 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821283005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.714 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds