Wall clock time and date at job start Mon Mar 30 2020 07:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47293 * 2 1 4 4 C 1.53003 * 109.47177 * 120.00176 * 2 1 3 5 5 C 1.50695 * 109.47483 * 64.99963 * 4 2 1 6 6 N 1.29808 * 121.32201 * 0.64980 * 5 4 2 7 7 C 1.45484 * 123.73309 * 182.04178 * 6 5 4 8 8 C 1.52956 * 113.28893 * 325.49140 * 7 6 5 9 9 C 1.50770 * 108.43835 * 44.75339 * 8 7 6 10 10 C 1.37950 * 120.29896 * 330.67717 * 9 8 7 11 11 C 1.44792 * 106.68982 * 179.97438 * 10 9 8 12 12 C 1.35149 * 106.01871 * 359.87766 * 11 10 9 13 13 N 1.33442 * 131.52048 * 150.33762 * 9 8 7 14 14 C 1.46500 * 124.92909 * 0.34449 * 13 9 8 15 15 C 1.50706 * 109.47299 * 84.71244 * 14 13 9 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 H 1.09006 * 109.47239 * 299.99936 * 1 2 3 24 24 H 1.09001 * 109.47259 * 59.99840 * 1 2 3 25 25 H 1.08999 * 109.47213 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47586 * 239.99874 * 2 1 3 27 27 H 1.08997 * 109.47901 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47098 * 300.00258 * 3 2 1 29 29 H 1.09006 * 109.46926 * 59.99872 * 3 2 1 30 30 H 1.09006 * 109.46695 * 304.99704 * 4 2 1 31 31 H 1.09002 * 109.46991 * 185.00349 * 4 2 1 32 32 H 1.09002 * 108.72062 * 204.51666 * 7 6 5 33 33 H 1.08997 * 108.72350 * 86.47830 * 7 6 5 34 34 H 1.09003 * 109.64299 * 285.07162 * 8 7 6 35 35 H 1.08994 * 109.63892 * 164.43921 * 8 7 6 36 36 H 1.07997 * 126.99189 * 179.85695 * 11 10 9 37 37 H 1.08005 * 125.51858 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.47078 * 324.72005 * 14 13 9 39 39 H 1.08993 * 109.47364 * 204.71777 * 14 13 9 40 40 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 -2.1733 1.1889 6 7 0.9779 -2.6496 0.1800 7 6 0.5295 -4.0305 0.0873 8 6 1.5002 -5.0256 0.7253 9 6 1.9416 -4.4741 2.0573 10 6 1.9991 -3.1110 2.2616 11 6 2.4523 -2.9133 3.6225 12 6 2.6316 -4.1492 4.1391 13 7 2.3175 -5.0803 3.1850 14 6 2.3906 -6.5314 3.3731 15 6 3.7191 -7.0366 2.8721 16 1 4.4372 -6.3458 2.4556 17 6 4.0177 -8.3806 2.9453 18 7 3.1453 -9.2210 3.4574 19 14 5.6647 -9.0067 2.3249 20 1 5.7412 -10.4767 2.5210 21 1 5.8013 -8.6922 0.8800 22 1 6.7607 -8.3488 3.0805 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 3.1263 -0.6443 1.2952 32 1 0.4057 -4.2882 -0.9646 33 1 -0.4374 -4.1185 0.5826 34 1 2.3673 -5.1580 0.0781 35 1 0.9997 -5.9825 0.8726 36 1 2.6143 -1.9700 4.1228 37 1 2.9673 -4.3673 5.1423 38 1 1.5859 -7.0110 2.8158 39 1 2.2888 -6.7660 4.4326 40 1 2.2902 -8.8960 3.7798 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821283005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:53 Heat of formation + Delta-G solvation = 22.283276 kcal Electronic energy + Delta-G solvation = -19409.642909 eV Core-core repulsion = 16609.391697 eV Total energy + Delta-G solvation = -2800.251212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.36138 -38.84928 -36.54120 -35.89695 -33.43734 -32.02093 -30.04770 -28.46397 -27.77728 -27.63804 -25.20605 -24.09277 -22.59789 -21.25310 -20.22108 -19.27717 -18.19816 -17.95235 -16.62259 -16.05209 -15.83202 -15.71082 -15.32677 -15.06678 -14.97039 -14.43612 -14.13554 -13.94418 -13.68915 -13.61952 -13.31028 -13.11248 -12.96991 -12.87013 -12.68370 -12.61196 -12.14217 -12.00881 -11.73391 -11.65217 -11.38191 -11.27657 -10.78270 -10.72567 -9.93163 -9.38580 -8.89925 -8.69800 -6.68263 0.65511 1.45216 1.51790 1.53719 1.73633 2.13628 2.38525 2.42740 2.92292 3.33230 3.66886 3.77463 3.95227 4.10351 4.19968 4.24305 4.28019 4.34791 4.39226 4.45274 4.61844 4.69901 4.77097 4.84655 4.90642 4.91806 4.94783 5.00209 5.11130 5.15464 5.21775 5.29071 5.40815 5.47815 5.62907 5.68986 5.81960 5.85712 6.02922 6.23179 6.40862 6.48595 7.10512 7.11644 8.48280 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.030884 B = 0.004644 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.394291 B = 6027.857821 C = 6118.058256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.144 4.144 4 C -0.058 4.058 5 C 0.261 3.739 6 N -0.557 5.557 7 C 0.065 3.935 8 C -0.069 4.069 9 C 0.028 3.972 10 C -0.252 4.252 11 C -0.153 4.153 12 C -0.047 4.047 13 N -0.406 5.406 14 C 0.227 3.773 15 C -0.629 4.629 16 H 0.045 0.955 17 C -0.015 4.015 18 N -0.919 5.919 19 Si 1.117 2.883 20 H -0.275 1.275 21 H -0.273 1.273 22 H -0.269 1.269 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.175 0.825 37 H 0.171 0.829 38 H 0.021 0.979 39 H 0.031 0.969 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.707 16.754 -4.035 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 C -0.201 4.201 4 C -0.095 4.095 5 C 0.074 3.926 6 N -0.268 5.268 7 C -0.065 4.065 8 C -0.108 4.108 9 C -0.094 4.094 10 C -0.262 4.262 11 C -0.178 4.178 12 C -0.175 4.175 13 N -0.075 5.075 14 C 0.107 3.893 15 C -0.666 4.666 16 H 0.063 0.937 17 C -0.215 4.215 18 N -0.555 5.555 19 Si 0.938 3.062 20 H -0.200 1.200 21 H -0.198 1.198 22 H -0.194 1.194 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.192 0.808 37 H 0.188 0.812 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.220 15.183 -5.005 16.140 hybrid contribution -0.845 -0.034 1.201 1.469 sum -3.065 15.149 -3.803 15.917 Atomic orbital electron populations 1.21881 0.95371 1.02196 1.00808 1.20834 0.96143 0.95772 0.96955 1.21838 1.01074 0.94949 1.02242 1.20667 1.01844 0.86802 1.00232 1.22844 0.88832 0.95001 0.85883 1.71106 1.16082 1.14416 1.25171 1.21851 0.96510 0.86776 1.01411 1.20533 1.00145 0.99534 0.90630 1.20772 1.04943 0.93292 0.90433 1.20503 1.16317 0.91884 0.97494 1.21772 1.05730 0.96917 0.93350 1.22384 1.10607 0.88323 0.96189 1.43633 1.46479 1.07534 1.09888 1.19496 0.97744 0.74915 0.97180 1.22315 1.01780 0.96162 1.46386 0.93665 1.27297 1.07201 0.93107 0.93914 1.70954 1.08375 1.37900 1.38252 0.82916 0.70433 0.76170 0.76731 1.20021 1.19797 1.19444 0.93146 0.93055 0.92436 0.92308 0.92367 0.92349 0.91907 0.88214 0.89026 0.87822 0.91564 0.91415 0.91196 0.80767 0.81206 0.96092 0.95106 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.93 71.98 0.64 -2.51 16 2 C -0.08 -1.65 2.56 -10.79 -0.03 -1.68 16 3 C -0.14 -2.28 9.19 71.98 0.66 -1.62 16 4 C -0.06 -1.33 5.12 29.85 0.15 -1.18 16 5 C 0.26 8.21 6.62 45.12 0.30 8.51 16 6 N -0.56 -17.97 7.44 -330.18 -2.46 -20.43 16 7 C 0.06 2.08 6.95 86.56 0.60 2.69 16 8 C -0.07 -2.66 6.33 29.86 0.19 -2.47 16 9 C 0.03 1.19 6.74 42.27 0.28 1.47 16 10 C -0.25 -9.32 6.18 -19.40 -0.12 -9.44 16 11 C -0.15 -5.17 11.09 23.23 0.26 -4.91 16 12 C -0.05 -1.82 11.37 83.18 0.95 -0.87 16 13 N -0.41 -18.29 2.65 -512.70 -1.36 -19.65 16 14 C 0.23 11.51 4.96 85.64 0.42 11.93 16 15 C -0.63 -34.74 9.38 25.60 0.24 -34.50 16 16 H 0.04 2.59 7.81 -2.91 -0.02 2.56 16 17 C -0.01 -0.81 5.46 84.65 0.46 -0.35 16 18 N -0.92 -53.28 13.65 21.45 0.29 -52.99 16 19 Si 1.12 48.40 29.90 68.60 2.05 50.45 16 20 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.52 5.83 -2.39 -0.01 1.50 16 26 H 0.06 1.45 7.93 -2.39 -0.02 1.43 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.07 2.69 8.14 -2.39 -0.02 2.68 16 35 H 0.07 2.74 7.68 -2.39 -0.02 2.72 16 36 H 0.18 4.39 8.06 -2.91 -0.02 4.36 16 37 H 0.17 5.86 8.06 -2.91 -0.02 5.83 16 38 H 0.02 1.11 7.53 -2.39 -0.02 1.09 16 39 H 0.03 1.59 7.98 -2.39 -0.02 1.57 16 40 H 0.26 15.02 7.22 -92.71 -0.67 14.35 16 Total: -1.00 -62.50 325.37 4.64 -57.86 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.10 Total: 19.67 kcal Atomic # 6 Polarization: -39.93 SS G_CDS: 5.01 Total: -34.92 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -3.53 Total: -93.06 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.05 Total: 50.45 kcal Total: -62.50 4.64 -57.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821283005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.144 kcal (2) G-P(sol) polarization free energy of solvation -62.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds