Wall clock time and date at job start Mon Mar 30 2020 07:16:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.53000 * 109.46844 * 2 1
4 4 C 1.52999 * 109.47328 * 65.00103 * 3 2 1
5 5 C 1.52992 * 109.47180 * 186.06919 * 4 3 2
6 6 C 1.50701 * 109.46619 * 184.99485 * 3 2 1
7 7 N 1.30044 * 121.41880 * 245.59593 * 6 3 2
8 8 C 1.45487 * 123.81134 * 182.12208 * 7 6 3
9 9 C 1.52968 * 113.27285 * 325.92308 * 8 7 6
10 10 C 1.50740 * 108.43173 * 44.69376 * 9 8 7
11 11 C 1.37936 * 120.36644 * 330.51591 * 10 9 8
12 12 C 1.45023 * 106.78439 * 179.65528 * 11 10 9
13 13 C 1.35055 * 106.24917 * 0.12349 * 12 11 10
14 14 N 1.34510 * 131.54903 * 150.31121 * 10 9 8
15 15 C 1.37367 * 125.05294 * 0.36362 * 14 10 9
16 16 H 1.08003 * 120.00090 * 24.69952 * 15 14 10
17 17 C 1.38993 * 120.00122 * 204.69985 * 15 14 10
18 18 N 1.31303 * 120.00265 * 5.67050 * 17 15 14
19 19 Si 1.86807 * 120.00044 * 185.66997 * 17 15 14
20 20 H 1.48496 * 109.47191 * 60.00163 * 19 17 15
21 21 H 1.48503 * 109.47062 * 179.97438 * 19 17 15
22 22 H 1.48495 * 109.47109 * 299.99915 * 19 17 15
23 23 H 1.08993 * 109.47195 * 299.99959 * 1 2 3
24 24 H 1.09005 * 109.46882 * 60.00496 * 1 2 3
25 25 H 1.09001 * 109.47079 * 179.97438 * 1 2 3
26 26 H 1.09000 * 109.47030 * 239.99739 * 2 1 3
27 27 H 1.09002 * 109.46361 * 120.00040 * 2 1 3
28 28 H 1.08994 * 109.47181 * 304.99899 * 3 2 1
29 29 H 1.09010 * 109.46664 * 306.07293 * 4 3 2
30 30 H 1.09004 * 109.47030 * 66.06336 * 4 3 2
31 31 H 1.09003 * 109.46868 * 184.97316 * 5 4 3
32 32 H 1.08995 * 109.47360 * 304.97278 * 5 4 3
33 33 H 1.09000 * 109.47047 * 64.97381 * 5 4 3
34 34 H 1.09002 * 108.72365 * 86.90316 * 8 7 6
35 35 H 1.08995 * 108.71864 * 204.94475 * 8 7 6
36 36 H 1.09004 * 109.63906 * 164.37275 * 9 8 7
37 37 H 1.08992 * 109.64584 * 285.01020 * 9 8 7
38 38 H 1.07999 * 126.87983 * 180.11245 * 12 11 10
39 39 H 1.07995 * 125.50722 * 179.97438 * 13 12 11
40 40 H 0.96996 * 119.99838 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.6352 2.1266 1.3073
5 6 2.0112 3.6083 1.2453
6 6 3.5419 1.4443 -0.1237
7 7 4.3010 1.8740 0.8407
8 6 5.7522 1.9406 0.7604
9 6 6.3642 0.8095 -0.0678
10 6 5.5543 0.6502 -1.3290
11 6 4.2104 0.9612 -1.3387
12 6 3.7321 0.7100 -2.6846
13 6 4.7973 0.2689 -3.3880
14 7 5.8954 0.2340 -2.5618
15 6 7.1540 -0.1665 -2.9391
16 1 7.8449 -0.5442 -2.1998
17 6 7.5386 -0.0857 -4.2723
18 7 6.7422 0.4756 -5.1525
19 14 9.1886 -0.7755 -4.8120
20 1 9.2397 -2.2289 -4.5114
21 1 9.3588 -0.5664 -6.2724
22 1 10.2786 -0.0803 -4.0815
23 1 -0.3633 0.5138 0.8899
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3633 -1.0277 -0.0005
26 1 1.8934 -0.5139 -0.8900
27 1 1.8933 -0.5139 0.8900
28 1 1.6054 1.9815 -0.8418
29 1 0.5587 2.0304 1.4495
30 1 2.1554 1.6542 2.1407
31 1 1.8042 4.0762 2.2077
32 1 3.0723 3.7046 1.0152
33 1 1.4250 4.0997 0.4688
34 1 6.0345 2.8939 0.3135
35 1 6.1608 1.8958 1.7699
36 1 7.3944 1.0583 -0.3228
37 1 6.3387 -0.1182 0.5037
38 1 2.7256 0.8479 -3.0510
39 1 4.7878 -0.0113 -4.4309
40 1 7.0104 0.5316 -6.0830
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000821283345.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:16:55
Heat of formation + Delta-G solvation = 36.382518 kcal
Electronic energy + Delta-G solvation = -19849.177377 eV
Core-core repulsion = 17049.537554 eV
Total energy + Delta-G solvation = -2799.639823 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.03647 -37.48327 -35.17188 -33.30190 -31.43962 -30.94288 -29.31043 -27.78584
-25.99961 -24.90571 -22.43053 -22.28572 -21.04289 -19.81330 -19.27399 -17.24328
-16.28674 -15.52452 -14.99523 -14.69129 -14.27798 -14.07445 -13.67949 -13.50405
-12.99891 -12.94963 -12.57366 -12.18055 -12.13027 -11.74396 -11.67567 -11.49471
-11.28819 -11.23528 -11.03722 -10.84430 -10.72674 -10.66061 -10.49529 -10.31146
-10.02042 -9.91166 -9.50075 -8.96146 -8.14132 -7.46100 -6.80774 -6.43785
-4.49341 2.53159 2.94248 2.98381 3.01022 3.74809 3.87404 4.44512
4.82015 4.86729 4.94657 5.24719 5.35899 5.54249 5.60254 5.72500
5.75723 5.81336 5.89072 6.01602 6.10138 6.16406 6.19523 6.28950
6.30742 6.37007 6.39636 6.45642 6.53728 6.64327 6.68741 6.75487
6.81740 6.87275 6.94728 7.01834 7.15734 7.49733 7.64061 7.83255
8.37188 8.45480 8.91090 9.06684 9.46807 10.22458
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.029622 B = 0.005614 C = 0.005081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 945.005772 B = 4986.334221 C = 5509.175806
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.112 4.112
3 C -0.031 4.031
4 C -0.104 4.104
5 C -0.150 4.150
6 C 0.278 3.722
7 N -0.580 5.580
8 C 0.069 3.931
9 C -0.058 4.058
10 C -0.014 4.014
11 C -0.261 4.261
12 C -0.203 4.203
13 C -0.004 4.004
14 N -0.229 5.229
15 C -0.356 4.356
16 H 0.104 0.896
17 C 0.050 3.950
18 N -0.841 5.841
19 Si 0.939 3.061
20 H -0.266 1.266
21 H -0.276 1.276
22 H -0.267 1.267
23 H 0.054 0.946
24 H 0.053 0.947
25 H 0.050 0.950
26 H 0.073 0.927
27 H 0.058 0.942
28 H 0.083 0.917
29 H 0.053 0.947
30 H 0.067 0.933
31 H 0.041 0.959
32 H 0.073 0.927
33 H 0.039 0.961
34 H 0.057 0.943
35 H 0.073 0.927
36 H 0.069 0.931
37 H 0.059 0.941
38 H 0.118 0.882
39 H 0.164 0.836
40 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.056 0.376 6.210 8.682
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.150 4.150
3 C -0.050 4.050
4 C -0.142 4.142
5 C -0.207 4.207
6 C 0.093 3.907
7 N -0.291 5.291
8 C -0.061 4.061
9 C -0.097 4.097
10 C -0.140 4.140
11 C -0.272 4.272
12 C -0.228 4.228
13 C -0.137 4.137
14 N 0.115 4.885
15 C -0.485 4.485
16 H 0.122 0.878
17 C -0.160 4.160
18 N -0.472 5.472
19 Si 0.763 3.237
20 H -0.191 1.191
21 H -0.201 1.201
22 H -0.192 1.192
23 H 0.073 0.927
24 H 0.072 0.928
25 H 0.069 0.931
26 H 0.092 0.908
27 H 0.077 0.923
28 H 0.101 0.899
29 H 0.072 0.928
30 H 0.086 0.914
31 H 0.060 0.940
32 H 0.092 0.908
33 H 0.059 0.941
34 H 0.075 0.925
35 H 0.091 0.909
36 H 0.088 0.912
37 H 0.077 0.923
38 H 0.136 0.864
39 H 0.181 0.819
40 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -5.658 0.700 6.745 8.832
hybrid contribution 1.348 -0.561 -1.339 1.981
sum -4.309 0.139 5.406 6.915
Atomic orbital electron populations
1.21824 0.96167 1.01129 1.01602 1.21455 0.94978 0.95761 1.02839
1.20050 0.89764 0.96564 0.98621 1.21397 0.99284 0.95956 0.97524
1.21800 1.03246 0.95788 0.99884 1.22237 0.93595 0.87563 0.87270
1.71033 1.05414 1.22084 1.30583 1.21651 0.88887 0.97305 0.98305
1.20239 0.98417 0.98927 0.92146 1.20126 0.94911 1.09900 0.89029
1.19592 0.93709 1.19121 0.94739 1.21133 0.97386 1.11340 0.92912
1.22108 0.84416 1.09654 0.97554 1.39521 1.07120 1.36212 1.05685
1.19893 0.89915 1.44095 0.94549 0.87824 1.25558 1.00194 0.94581
0.95661 1.69872 1.36899 1.36535 1.03882 0.85806 0.80149 0.79698
0.78060 1.19103 1.20125 1.19191 0.92749 0.92806 0.93130 0.90791
0.92307 0.89925 0.92810 0.91415 0.93967 0.90845 0.94149 0.92468
0.90885 0.91236 0.92284 0.86374 0.81910 0.90905
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.76 9.68 37.16 0.36 -1.40 16
2 C -0.11 -1.65 5.35 -26.73 -0.14 -1.79 16
3 C -0.03 -0.50 2.14 -91.77 -0.20 -0.69 16
4 C -0.10 -1.49 4.92 -26.74 -0.13 -1.63 16
5 C -0.15 -2.17 9.71 37.15 0.36 -1.81 16
6 C 0.28 5.54 5.82 -79.87 -0.46 5.08 16
7 N -0.58 -11.48 7.77 -55.67 -0.43 -11.91 16
8 C 0.07 1.33 6.96 -4.60 -0.03 1.29 16
9 C -0.06 -1.22 6.32 -27.88 -0.18 -1.39 16
10 C -0.01 -0.35 6.71 -81.51 -0.55 -0.89 16
11 C -0.26 -6.04 5.80 -103.84 -0.60 -6.64 16
12 C -0.20 -4.73 10.85 -38.03 -0.41 -5.15 16
13 C 0.00 -0.10 9.96 -16.16 -0.16 -0.26 16
14 N -0.23 -6.04 2.84 -57.34 -0.16 -6.20 16
15 C -0.36 -9.29 9.85 -14.79 -0.15 -9.44 16
16 H 0.10 2.57 7.84 -52.48 -0.41 2.15 16
17 C 0.05 1.25 5.40 -17.50 -0.09 1.16 16
18 N -0.84 -21.75 10.85 55.50 0.60 -21.15 16
19 Si 0.94 18.82 29.56 -169.99 -5.02 13.80 16
20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16
21 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16
22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16
23 H 0.05 0.58 6.44 -51.93 -0.33 0.25 16
24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
26 H 0.07 1.22 7.60 -51.93 -0.39 0.82 16
27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16
29 H 0.05 0.66 6.30 -51.92 -0.33 0.33 16
30 H 0.07 1.04 7.81 -51.93 -0.41 0.64 16
31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.07 1.24 6.06 -51.93 -0.31 0.93 16
33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16
36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16
37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16
38 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16
39 H 0.16 4.25 6.43 -52.49 -0.34 3.91 16
40 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16
LS Contribution 318.06 15.07 4.79 4.79
Total: -1.00 -27.53 318.06 -8.92 -36.46
By element:
Atomic # 1 Polarization: 14.09 SS G_CDS: -6.31 Total: 7.78 kcal
Atomic # 6 Polarization: -21.18 SS G_CDS: -2.39 Total: -23.56 kcal
Atomic # 7 Polarization: -39.26 SS G_CDS: 0.01 Total: -39.26 kcal
Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -27.53 -8.92 -36.46 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000821283345.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.839 kcal
(2) G-P(sol) polarization free energy of solvation -27.535 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.304 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.383 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds