Wall clock time and date at job start Mon Mar 30 2020 07:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46844 * 2 1 4 4 C 1.52999 * 109.47328 * 65.00103 * 3 2 1 5 5 C 1.52992 * 109.47180 * 186.06919 * 4 3 2 6 6 C 1.50701 * 109.46619 * 184.99485 * 3 2 1 7 7 N 1.30044 * 121.41880 * 245.59593 * 6 3 2 8 8 C 1.45487 * 123.81134 * 182.12208 * 7 6 3 9 9 C 1.52968 * 113.27285 * 325.92308 * 8 7 6 10 10 C 1.50740 * 108.43173 * 44.69376 * 9 8 7 11 11 C 1.37936 * 120.36644 * 330.51591 * 10 9 8 12 12 C 1.45023 * 106.78439 * 179.65528 * 11 10 9 13 13 C 1.35055 * 106.24917 * 0.12349 * 12 11 10 14 14 N 1.34510 * 131.54903 * 150.31121 * 10 9 8 15 15 C 1.37367 * 125.05294 * 0.36362 * 14 10 9 16 16 H 1.08003 * 120.00090 * 24.69952 * 15 14 10 17 17 C 1.38993 * 120.00122 * 204.69985 * 15 14 10 18 18 N 1.31303 * 120.00265 * 5.67050 * 17 15 14 19 19 Si 1.86807 * 120.00044 * 185.66997 * 17 15 14 20 20 H 1.48496 * 109.47191 * 60.00163 * 19 17 15 21 21 H 1.48503 * 109.47062 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47109 * 299.99915 * 19 17 15 23 23 H 1.08993 * 109.47195 * 299.99959 * 1 2 3 24 24 H 1.09005 * 109.46882 * 60.00496 * 1 2 3 25 25 H 1.09001 * 109.47079 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47030 * 239.99739 * 2 1 3 27 27 H 1.09002 * 109.46361 * 120.00040 * 2 1 3 28 28 H 1.08994 * 109.47181 * 304.99899 * 3 2 1 29 29 H 1.09010 * 109.46664 * 306.07293 * 4 3 2 30 30 H 1.09004 * 109.47030 * 66.06336 * 4 3 2 31 31 H 1.09003 * 109.46868 * 184.97316 * 5 4 3 32 32 H 1.08995 * 109.47360 * 304.97278 * 5 4 3 33 33 H 1.09000 * 109.47047 * 64.97381 * 5 4 3 34 34 H 1.09002 * 108.72365 * 86.90316 * 8 7 6 35 35 H 1.08995 * 108.71864 * 204.94475 * 8 7 6 36 36 H 1.09004 * 109.63906 * 164.37275 * 9 8 7 37 37 H 1.08992 * 109.64584 * 285.01020 * 9 8 7 38 38 H 1.07999 * 126.87983 * 180.11245 * 12 11 10 39 39 H 1.07995 * 125.50722 * 179.97438 * 13 12 11 40 40 H 0.96996 * 119.99838 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0112 3.6083 1.2453 6 6 3.5419 1.4443 -0.1237 7 7 4.3010 1.8740 0.8407 8 6 5.7522 1.9406 0.7604 9 6 6.3642 0.8095 -0.0678 10 6 5.5543 0.6502 -1.3290 11 6 4.2104 0.9612 -1.3387 12 6 3.7321 0.7100 -2.6846 13 6 4.7973 0.2689 -3.3880 14 7 5.8954 0.2340 -2.5618 15 6 7.1540 -0.1665 -2.9391 16 1 7.8449 -0.5442 -2.1998 17 6 7.5386 -0.0857 -4.2723 18 7 6.7422 0.4756 -5.1525 19 14 9.1886 -0.7755 -4.8120 20 1 9.2397 -2.2289 -4.5114 21 1 9.3588 -0.5664 -6.2724 22 1 10.2786 -0.0803 -4.0815 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6054 1.9815 -0.8418 29 1 0.5587 2.0304 1.4495 30 1 2.1554 1.6542 2.1407 31 1 1.8042 4.0762 2.2077 32 1 3.0723 3.7046 1.0152 33 1 1.4250 4.0997 0.4688 34 1 6.0345 2.8939 0.3135 35 1 6.1608 1.8958 1.7699 36 1 7.3944 1.0583 -0.3228 37 1 6.3387 -0.1182 0.5037 38 1 2.7256 0.8479 -3.0510 39 1 4.7878 -0.0113 -4.4309 40 1 7.0104 0.5316 -6.0830 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821283345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:55 Heat of formation + Delta-G solvation = 36.382518 kcal Electronic energy + Delta-G solvation = -19849.177377 eV Core-core repulsion = 17049.537554 eV Total energy + Delta-G solvation = -2799.639823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.03647 -37.48327 -35.17188 -33.30190 -31.43962 -30.94288 -29.31043 -27.78584 -25.99961 -24.90571 -22.43053 -22.28572 -21.04289 -19.81330 -19.27399 -17.24328 -16.28674 -15.52452 -14.99523 -14.69129 -14.27798 -14.07445 -13.67949 -13.50405 -12.99891 -12.94963 -12.57366 -12.18055 -12.13027 -11.74396 -11.67567 -11.49471 -11.28819 -11.23528 -11.03722 -10.84430 -10.72674 -10.66061 -10.49529 -10.31146 -10.02042 -9.91166 -9.50075 -8.96146 -8.14132 -7.46100 -6.80774 -6.43785 -4.49341 2.53159 2.94248 2.98381 3.01022 3.74809 3.87404 4.44512 4.82015 4.86729 4.94657 5.24719 5.35899 5.54249 5.60254 5.72500 5.75723 5.81336 5.89072 6.01602 6.10138 6.16406 6.19523 6.28950 6.30742 6.37007 6.39636 6.45642 6.53728 6.64327 6.68741 6.75487 6.81740 6.87275 6.94728 7.01834 7.15734 7.49733 7.64061 7.83255 8.37188 8.45480 8.91090 9.06684 9.46807 10.22458 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.005614 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.005772 B = 4986.334221 C = 5509.175806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.031 4.031 4 C -0.104 4.104 5 C -0.150 4.150 6 C 0.278 3.722 7 N -0.580 5.580 8 C 0.069 3.931 9 C -0.058 4.058 10 C -0.014 4.014 11 C -0.261 4.261 12 C -0.203 4.203 13 C -0.004 4.004 14 N -0.229 5.229 15 C -0.356 4.356 16 H 0.104 0.896 17 C 0.050 3.950 18 N -0.841 5.841 19 Si 0.939 3.061 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.267 1.267 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.118 0.882 39 H 0.164 0.836 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 0.376 6.210 8.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.050 4.050 4 C -0.142 4.142 5 C -0.207 4.207 6 C 0.093 3.907 7 N -0.291 5.291 8 C -0.061 4.061 9 C -0.097 4.097 10 C -0.140 4.140 11 C -0.272 4.272 12 C -0.228 4.228 13 C -0.137 4.137 14 N 0.115 4.885 15 C -0.485 4.485 16 H 0.122 0.878 17 C -0.160 4.160 18 N -0.472 5.472 19 Si 0.763 3.237 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.192 1.192 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.136 0.864 39 H 0.181 0.819 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.658 0.700 6.745 8.832 hybrid contribution 1.348 -0.561 -1.339 1.981 sum -4.309 0.139 5.406 6.915 Atomic orbital electron populations 1.21824 0.96167 1.01129 1.01602 1.21455 0.94978 0.95761 1.02839 1.20050 0.89764 0.96564 0.98621 1.21397 0.99284 0.95956 0.97524 1.21800 1.03246 0.95788 0.99884 1.22237 0.93595 0.87563 0.87270 1.71033 1.05414 1.22084 1.30583 1.21651 0.88887 0.97305 0.98305 1.20239 0.98417 0.98927 0.92146 1.20126 0.94911 1.09900 0.89029 1.19592 0.93709 1.19121 0.94739 1.21133 0.97386 1.11340 0.92912 1.22108 0.84416 1.09654 0.97554 1.39521 1.07120 1.36212 1.05685 1.19893 0.89915 1.44095 0.94549 0.87824 1.25558 1.00194 0.94581 0.95661 1.69872 1.36899 1.36535 1.03882 0.85806 0.80149 0.79698 0.78060 1.19103 1.20125 1.19191 0.92749 0.92806 0.93130 0.90791 0.92307 0.89925 0.92810 0.91415 0.93967 0.90845 0.94149 0.92468 0.90885 0.91236 0.92284 0.86374 0.81910 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.68 37.16 0.36 -1.40 16 2 C -0.11 -1.65 5.35 -26.73 -0.14 -1.79 16 3 C -0.03 -0.50 2.14 -91.77 -0.20 -0.69 16 4 C -0.10 -1.49 4.92 -26.74 -0.13 -1.63 16 5 C -0.15 -2.17 9.71 37.15 0.36 -1.81 16 6 C 0.28 5.54 5.82 -79.87 -0.46 5.08 16 7 N -0.58 -11.48 7.77 -55.67 -0.43 -11.91 16 8 C 0.07 1.33 6.96 -4.60 -0.03 1.29 16 9 C -0.06 -1.22 6.32 -27.88 -0.18 -1.39 16 10 C -0.01 -0.35 6.71 -81.51 -0.55 -0.89 16 11 C -0.26 -6.04 5.80 -103.84 -0.60 -6.64 16 12 C -0.20 -4.73 10.85 -38.03 -0.41 -5.15 16 13 C 0.00 -0.10 9.96 -16.16 -0.16 -0.26 16 14 N -0.23 -6.04 2.84 -57.34 -0.16 -6.20 16 15 C -0.36 -9.29 9.85 -14.79 -0.15 -9.44 16 16 H 0.10 2.57 7.84 -52.48 -0.41 2.15 16 17 C 0.05 1.25 5.40 -17.50 -0.09 1.16 16 18 N -0.84 -21.75 10.85 55.50 0.60 -21.15 16 19 Si 0.94 18.82 29.56 -169.99 -5.02 13.80 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 H 0.05 0.58 6.44 -51.93 -0.33 0.25 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.22 7.60 -51.93 -0.39 0.82 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.05 0.66 6.30 -51.92 -0.33 0.33 16 30 H 0.07 1.04 7.81 -51.93 -0.41 0.64 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.24 6.06 -51.93 -0.31 0.93 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 39 H 0.16 4.25 6.43 -52.49 -0.34 3.91 16 40 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 318.06 15.07 4.79 4.79 Total: -1.00 -27.53 318.06 -8.92 -36.46 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.31 Total: 7.78 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -2.39 Total: -23.56 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.01 Total: -39.26 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.53 -8.92 -36.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821283345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.839 kcal (2) G-P(sol) polarization free energy of solvation -27.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds