Wall clock time and date at job start Mon Mar 30 2020 07:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46844 * 2 1 4 4 C 1.52999 * 109.47328 * 65.00103 * 3 2 1 5 5 C 1.52992 * 109.47180 * 186.06919 * 4 3 2 6 6 C 1.50701 * 109.46619 * 184.99485 * 3 2 1 7 7 N 1.30044 * 121.41880 * 245.59593 * 6 3 2 8 8 C 1.45487 * 123.81134 * 182.12208 * 7 6 3 9 9 C 1.52968 * 113.27285 * 325.92308 * 8 7 6 10 10 C 1.50740 * 108.43173 * 44.69376 * 9 8 7 11 11 C 1.37936 * 120.36644 * 330.51591 * 10 9 8 12 12 C 1.45023 * 106.78439 * 179.65528 * 11 10 9 13 13 C 1.35055 * 106.24917 * 0.12349 * 12 11 10 14 14 N 1.34510 * 131.54903 * 150.31121 * 10 9 8 15 15 C 1.37367 * 125.05294 * 0.36362 * 14 10 9 16 16 H 1.08003 * 120.00090 * 24.69952 * 15 14 10 17 17 C 1.38993 * 120.00122 * 204.69985 * 15 14 10 18 18 N 1.31303 * 120.00265 * 5.67050 * 17 15 14 19 19 Si 1.86807 * 120.00044 * 185.66997 * 17 15 14 20 20 H 1.48496 * 109.47191 * 60.00163 * 19 17 15 21 21 H 1.48503 * 109.47062 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47109 * 299.99915 * 19 17 15 23 23 H 1.08993 * 109.47195 * 299.99959 * 1 2 3 24 24 H 1.09005 * 109.46882 * 60.00496 * 1 2 3 25 25 H 1.09001 * 109.47079 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47030 * 239.99739 * 2 1 3 27 27 H 1.09002 * 109.46361 * 120.00040 * 2 1 3 28 28 H 1.08994 * 109.47181 * 304.99899 * 3 2 1 29 29 H 1.09010 * 109.46664 * 306.07293 * 4 3 2 30 30 H 1.09004 * 109.47030 * 66.06336 * 4 3 2 31 31 H 1.09003 * 109.46868 * 184.97316 * 5 4 3 32 32 H 1.08995 * 109.47360 * 304.97278 * 5 4 3 33 33 H 1.09000 * 109.47047 * 64.97381 * 5 4 3 34 34 H 1.09002 * 108.72365 * 86.90316 * 8 7 6 35 35 H 1.08995 * 108.71864 * 204.94475 * 8 7 6 36 36 H 1.09004 * 109.63906 * 164.37275 * 9 8 7 37 37 H 1.08992 * 109.64584 * 285.01020 * 9 8 7 38 38 H 1.07999 * 126.87983 * 180.11245 * 12 11 10 39 39 H 1.07995 * 125.50722 * 179.97438 * 13 12 11 40 40 H 0.96996 * 119.99838 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0112 3.6083 1.2453 6 6 3.5419 1.4443 -0.1237 7 7 4.3010 1.8740 0.8407 8 6 5.7522 1.9406 0.7604 9 6 6.3642 0.8095 -0.0678 10 6 5.5543 0.6502 -1.3290 11 6 4.2104 0.9612 -1.3387 12 6 3.7321 0.7100 -2.6846 13 6 4.7973 0.2689 -3.3880 14 7 5.8954 0.2340 -2.5618 15 6 7.1540 -0.1665 -2.9391 16 1 7.8449 -0.5442 -2.1998 17 6 7.5386 -0.0857 -4.2723 18 7 6.7422 0.4756 -5.1525 19 14 9.1886 -0.7755 -4.8120 20 1 9.2397 -2.2289 -4.5114 21 1 9.3588 -0.5664 -6.2724 22 1 10.2786 -0.0803 -4.0815 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6054 1.9815 -0.8418 29 1 0.5587 2.0304 1.4495 30 1 2.1554 1.6542 2.1407 31 1 1.8042 4.0762 2.2077 32 1 3.0723 3.7046 1.0152 33 1 1.4250 4.0997 0.4688 34 1 6.0345 2.8939 0.3135 35 1 6.1608 1.8958 1.7699 36 1 7.3944 1.0583 -0.3228 37 1 6.3387 -0.1182 0.5037 38 1 2.7256 0.8479 -3.0510 39 1 4.7878 -0.0113 -4.4309 40 1 7.0104 0.5316 -6.0830 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821283345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:55 Heat of formation + Delta-G solvation = 23.418025 kcal Electronic energy + Delta-G solvation = -19849.739559 eV Core-core repulsion = 17049.537554 eV Total energy + Delta-G solvation = -2800.202006 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.85695 -38.93972 -36.63383 -35.17132 -32.75103 -32.48385 -31.02200 -29.42472 -27.42066 -26.71519 -23.96913 -23.56282 -22.48435 -21.66541 -20.82915 -18.97077 -17.98273 -17.40811 -16.61178 -16.26096 -15.58199 -15.45445 -15.08452 -14.83710 -14.72691 -14.67939 -13.95505 -13.86659 -13.48049 -13.31250 -13.22386 -12.87478 -12.74379 -12.64616 -12.54564 -12.42302 -12.24342 -12.18543 -11.79450 -11.72459 -11.32953 -11.22978 -11.12304 -10.60767 -9.76241 -9.33120 -8.67836 -8.30578 -6.46557 0.86402 1.32057 1.34941 1.46463 1.97318 2.11134 2.67272 2.95209 3.07314 3.46231 3.99225 4.06096 4.17274 4.23978 4.33495 4.44227 4.50709 4.62262 4.65842 4.72520 4.79455 4.84738 4.91018 4.94903 5.03091 5.04881 5.07345 5.17752 5.21763 5.24115 5.29070 5.37220 5.43159 5.57564 5.62715 5.66793 5.69588 5.80012 6.07881 6.50939 6.56391 7.15951 7.30513 7.55808 8.36085 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.005614 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.005772 B = 4986.334221 C = 5509.175806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C -0.029 4.029 4 C -0.097 4.097 5 C -0.148 4.148 6 C 0.271 3.729 7 N -0.573 5.573 8 C 0.067 3.933 9 C -0.054 4.054 10 C -0.045 4.045 11 C -0.266 4.266 12 C -0.200 4.200 13 C -0.036 4.036 14 N -0.248 5.248 15 C -0.390 4.390 16 H 0.107 0.893 17 C 0.008 3.992 18 N -0.873 5.873 19 Si 1.012 2.988 20 H -0.259 1.259 21 H -0.269 1.269 22 H -0.260 1.260 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 0.540 7.411 10.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.048 4.048 4 C -0.134 4.134 5 C -0.206 4.206 6 C 0.085 3.915 7 N -0.283 5.283 8 C -0.063 4.063 9 C -0.093 4.093 10 C -0.170 4.170 11 C -0.276 4.276 12 C -0.224 4.224 13 C -0.169 4.169 14 N 0.094 4.906 15 C -0.517 4.517 16 H 0.125 0.875 17 C -0.199 4.199 18 N -0.504 5.504 19 Si 0.832 3.168 20 H -0.184 1.184 21 H -0.193 1.193 22 H -0.184 1.184 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.410 0.870 7.966 10.262 hybrid contribution 1.528 -0.573 -1.667 2.333 sum -4.882 0.298 6.299 7.975 Atomic orbital electron populations 1.21780 0.93414 1.02221 1.02644 1.21402 0.97299 0.94462 1.01447 1.20164 0.86958 0.97717 0.99947 1.21361 1.00902 0.95366 0.95777 1.21766 1.01503 0.96203 1.01096 1.22761 0.95576 0.87245 0.85876 1.71116 1.05622 1.21453 1.30143 1.21779 0.88821 0.96238 0.99511 1.20308 0.98158 0.99855 0.91007 1.20895 0.96369 1.10125 0.89592 1.20069 0.93622 1.18195 0.95732 1.21426 0.97873 1.10177 0.92925 1.22145 0.85463 1.11750 0.97512 1.39755 1.07340 1.37038 1.06426 1.20280 0.90387 1.45492 0.95571 0.87550 1.26589 1.03943 0.94224 0.95102 1.69975 1.38783 1.37305 1.04345 0.84730 0.75234 0.79080 0.77780 1.18368 1.19323 1.18449 0.91175 0.92227 0.92120 0.93124 0.92812 0.89543 0.89914 0.92407 0.92358 0.93626 0.93278 0.93015 0.87961 0.91196 0.91717 0.83954 0.83285 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.68 71.98 0.70 -2.24 16 2 C -0.11 -3.00 5.35 30.60 0.16 -2.84 16 3 C -0.03 -0.87 2.14 -11.54 -0.02 -0.90 16 4 C -0.10 -2.50 4.92 30.59 0.15 -2.35 16 5 C -0.15 -3.94 9.71 71.98 0.70 -3.24 16 6 C 0.27 10.61 5.82 45.08 0.26 10.87 16 7 N -0.57 -22.05 7.77 -330.04 -2.57 -24.61 16 8 C 0.07 2.51 6.96 86.56 0.60 3.11 16 9 C -0.05 -2.27 6.32 29.85 0.19 -2.09 16 10 C -0.05 -2.25 6.71 42.09 0.28 -1.97 16 11 C -0.27 -12.41 5.80 -19.36 -0.11 -12.52 16 12 C -0.20 -9.46 10.85 23.28 0.25 -9.21 16 13 C -0.04 -1.90 9.96 83.08 0.83 -1.07 16 14 N -0.25 -13.55 2.84 -335.34 -0.95 -14.50 16 15 C -0.39 -20.93 9.85 84.01 0.83 -20.10 16 16 H 0.11 5.41 7.84 -2.91 -0.02 5.39 16 17 C 0.01 0.42 5.40 84.95 0.46 0.88 16 18 N -0.87 -46.37 10.85 21.66 0.24 -46.14 16 19 Si 1.01 38.67 29.56 68.60 2.03 40.70 16 20 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 21 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 23 H 0.07 1.23 6.44 -2.39 -0.02 1.21 16 24 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.64 7.60 -2.39 -0.02 1.62 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.08 1.69 6.30 -2.38 -0.02 1.68 16 30 H 0.06 1.63 7.81 -2.39 -0.02 1.61 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.04 1.46 6.06 -2.39 -0.01 1.45 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 35 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.14 5.82 8.06 -2.91 -0.02 5.79 16 39 H 0.15 8.20 6.43 -2.91 -0.02 8.18 16 40 H 0.29 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -60.56 318.06 5.03 -55.53 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 1.01 Total: 32.69 kcal Atomic # 6 Polarization: -48.93 SS G_CDS: 5.27 Total: -43.66 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -3.28 Total: -85.25 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -60.56 5.03 -55.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821283345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.948 kcal (2) G-P(sol) polarization free energy of solvation -60.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds