Wall clock time and date at job start Mon Mar 30 2020 07:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46975 * 2 1 4 4 C 1.50688 * 109.47353 * 120.00429 * 2 1 3 5 5 N 1.30004 * 121.41902 * 355.00269 * 4 2 1 6 6 C 1.45482 * 123.80719 * 181.81412 * 5 4 2 7 7 C 1.52953 * 113.28481 * 325.93365 * 6 5 4 8 8 C 1.50770 * 108.44131 * 44.75598 * 7 6 5 9 9 C 1.37961 * 120.29314 * 330.40760 * 8 7 6 10 10 C 1.44791 * 106.68856 * 179.78057 * 9 8 7 11 11 C 1.35148 * 106.01772 * 0.11494 * 10 9 8 12 12 N 1.33438 * 131.52788 * 150.39940 * 8 7 6 13 13 C 1.46505 * 124.92850 * 0.18617 * 12 8 7 14 14 C 1.52992 * 109.46923 * 85.00040 * 13 12 8 15 15 C 1.50705 * 109.46994 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00033 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99925 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00311 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99801 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47190 * 90.00178 * 19 17 15 21 21 H 1.48506 * 109.46933 * 209.99940 * 19 17 15 22 22 H 1.48499 * 109.47211 * 329.99930 * 19 17 15 23 23 H 1.09000 * 109.47124 * 59.99721 * 1 2 3 24 24 H 1.09003 * 109.46745 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.46768 * 299.99448 * 1 2 3 26 26 H 1.09004 * 109.46816 * 240.00604 * 2 1 3 27 27 H 1.08997 * 109.46697 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47234 * 300.00532 * 3 2 1 29 29 H 1.08996 * 109.46520 * 60.00603 * 3 2 1 30 30 H 1.09001 * 108.72104 * 86.91283 * 6 5 4 31 31 H 1.08994 * 108.72080 * 204.95831 * 6 5 4 32 32 H 1.08997 * 109.64650 * 164.44053 * 7 6 5 33 33 H 1.09006 * 109.64826 * 285.07236 * 7 6 5 34 34 H 1.07995 * 126.98846 * 180.11734 * 10 9 8 35 35 H 1.08005 * 125.51561 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46868 * 205.00222 * 13 12 8 37 37 H 1.09002 * 109.46758 * 325.00089 * 13 12 8 38 38 H 1.09004 * 109.47297 * 300.00188 * 14 13 12 39 39 H 1.08993 * 109.47491 * 60.00282 * 14 13 12 40 40 H 0.97002 * 120.00302 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.2163 -1.1305 2.1510 6 6 1.6466 -1.7875 3.3756 7 6 2.8899 -2.6588 3.1896 8 6 3.8917 -1.8905 2.3654 9 6 3.4646 -0.9633 1.4374 10 6 4.6541 -0.4062 0.8284 11 6 5.7003 -1.0260 1.4181 12 7 5.2256 -1.9198 2.3411 13 6 6.0611 -2.7819 3.1808 14 6 6.2079 -4.1525 2.5172 15 6 7.0669 -5.0395 3.3812 16 1 7.4683 -4.6631 4.3104 17 6 7.3412 -6.3313 2.9848 18 7 6.8528 -6.7896 1.8530 19 14 8.4065 -7.4304 4.0555 20 1 7.5472 -8.1712 5.0138 21 1 9.1389 -8.3969 3.1982 22 1 9.3803 -6.5972 4.8056 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.8625 -1.0253 4.1243 31 1 0.8327 -2.4132 3.7415 32 1 3.3205 -2.8954 4.1625 33 1 2.6185 -3.5790 2.6721 34 1 4.6967 0.3508 0.0593 35 1 6.7421 -0.8464 1.1968 36 1 7.0452 -2.3288 3.3005 37 1 5.5939 -2.8997 4.1585 38 1 5.2237 -4.6055 2.3974 39 1 6.6750 -4.0347 1.5395 40 1 7.0455 -7.6985 1.5743 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821289261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:24 Heat of formation + Delta-G solvation = 39.209560 kcal Electronic energy + Delta-G solvation = -19316.833234 eV Core-core repulsion = 16517.316001 eV Total energy + Delta-G solvation = -2799.517233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09545 -37.51906 -34.80435 -34.08482 -32.17289 -30.46740 -28.88971 -28.18522 -26.96777 -24.96971 -23.47545 -22.35400 -21.41538 -20.62842 -18.81412 -17.07241 -16.89050 -16.18784 -15.15537 -14.71144 -14.66621 -14.40844 -14.15576 -13.66780 -13.54972 -13.12534 -12.69869 -12.55026 -12.29198 -12.14699 -12.03429 -11.83947 -11.50706 -11.46500 -11.09732 -11.03910 -10.87264 -10.77689 -10.63625 -10.26494 -10.05569 -9.57436 -9.44532 -8.78703 -8.56045 -8.00537 -7.39654 -6.19692 -4.26157 1.90567 2.81957 3.20329 3.26827 3.29074 3.42080 3.64324 4.30111 4.39245 4.92218 4.95787 5.14749 5.16747 5.21066 5.36886 5.44506 5.45733 5.50133 5.62137 5.71320 5.78216 5.87413 5.95179 5.96708 5.97196 6.04512 6.09439 6.17793 6.24194 6.36679 6.38999 6.46118 6.51428 6.88451 7.26354 7.36745 7.37589 7.67934 7.71082 7.84106 8.11392 8.32550 8.79518 9.39805 10.91225 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033496 B = 0.004372 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.717187 B = 6403.115800 C = 6681.026368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.042 4.042 3 C -0.141 4.141 4 C 0.268 3.732 5 N -0.559 5.559 6 C 0.063 3.937 7 C -0.077 4.077 8 C 0.060 3.940 9 C -0.238 4.238 10 C -0.162 4.162 11 C -0.024 4.024 12 N -0.405 5.405 13 C 0.095 3.905 14 C 0.015 3.985 15 C -0.532 4.532 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.272 1.272 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.023 0.977 39 H 0.024 0.976 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.863 13.366 -1.588 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.061 4.061 3 C -0.199 4.199 4 C 0.081 3.919 5 N -0.269 5.269 6 C -0.067 4.067 7 C -0.116 4.116 8 C -0.062 4.062 9 C -0.248 4.248 10 C -0.187 4.187 11 C -0.152 4.152 12 N -0.076 5.076 13 C -0.025 4.025 14 C -0.023 4.023 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.526 5.526 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.158 0.842 35 H 0.178 0.822 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.557 12.894 -1.162 15.518 hybrid contribution 1.758 -1.054 0.667 2.156 sum -6.799 11.839 -0.496 13.661 Atomic orbital electron populations 1.21621 0.93925 1.02215 1.01091 1.19995 0.96420 0.95618 0.94073 1.21800 1.01886 0.94538 1.01647 1.22385 0.86957 0.89521 0.93012 1.71077 1.37704 1.14938 1.03155 1.21800 0.95063 0.96960 0.92904 1.20611 0.93135 0.98348 0.99505 1.20327 0.84315 1.00773 1.00820 1.20043 0.93560 1.06033 1.05134 1.21429 0.90481 1.03728 1.03085 1.21959 0.99189 0.97093 0.97003 1.43712 1.05001 1.29308 1.29538 1.22461 0.93463 0.93059 0.93494 1.19412 0.98119 0.88173 0.96561 1.20993 1.32016 0.97367 1.06653 0.92295 1.24999 0.95888 0.98017 0.95120 1.69967 1.44400 1.16925 1.21304 0.86510 0.80436 0.80379 0.80214 1.20452 1.21000 1.19719 0.93297 0.92435 0.92159 0.89436 0.91738 0.92295 0.92712 0.91653 0.89477 0.89958 0.89822 0.84237 0.82154 0.89989 0.90518 0.95908 0.95763 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.48 37.16 0.32 -1.16 16 2 C -0.04 -0.52 3.21 -91.77 -0.29 -0.81 16 3 C -0.14 -1.45 9.08 37.16 0.34 -1.12 16 4 C 0.27 4.19 6.26 -79.87 -0.50 3.69 16 5 N -0.56 -9.01 9.56 -55.68 -0.53 -9.54 16 6 C 0.06 0.94 6.96 -4.61 -0.03 0.91 16 7 C -0.08 -1.28 6.33 -27.87 -0.18 -1.45 16 8 C 0.06 1.11 6.74 -81.96 -0.55 0.56 16 9 C -0.24 -4.09 6.07 -103.90 -0.63 -4.72 16 10 C -0.16 -2.55 10.30 -38.09 -0.39 -2.94 16 11 C -0.02 -0.40 11.37 -16.36 -0.19 -0.58 16 12 N -0.41 -7.56 2.67 -112.13 -0.30 -7.86 16 13 C 0.10 1.87 5.84 -4.04 -0.02 1.85 16 14 C 0.01 0.37 5.30 -27.88 -0.15 0.22 16 15 C -0.53 -14.23 9.11 -34.44 -0.31 -14.55 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 19 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.71 8.04 -51.93 -0.42 0.30 16 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.67 5.75 -51.93 -0.30 0.37 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.28 7.67 -51.93 -0.40 0.88 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.14 1.77 6.65 -52.49 -0.35 1.42 16 35 H 0.16 2.29 8.06 -52.48 -0.42 1.86 16 36 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 37 H 0.08 1.43 7.65 -51.93 -0.40 1.04 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -30.07 326.26 -9.37 -39.43 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.47 Total: 0.98 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -2.69 Total: -18.47 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -0.10 Total: -42.64 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.07 -9.37 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821289261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.641 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds