Wall clock time and date at job start Mon Mar 30 2020 07:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46975 * 2 1 4 4 C 1.50688 * 109.47353 * 120.00429 * 2 1 3 5 5 N 1.30004 * 121.41902 * 355.00269 * 4 2 1 6 6 C 1.45482 * 123.80719 * 181.81412 * 5 4 2 7 7 C 1.52953 * 113.28481 * 325.93365 * 6 5 4 8 8 C 1.50770 * 108.44131 * 44.75598 * 7 6 5 9 9 C 1.37961 * 120.29314 * 330.40760 * 8 7 6 10 10 C 1.44791 * 106.68856 * 179.78057 * 9 8 7 11 11 C 1.35148 * 106.01772 * 0.11494 * 10 9 8 12 12 N 1.33438 * 131.52788 * 150.39940 * 8 7 6 13 13 C 1.46505 * 124.92850 * 0.18617 * 12 8 7 14 14 C 1.52992 * 109.46923 * 85.00040 * 13 12 8 15 15 C 1.50705 * 109.46994 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00033 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99925 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00311 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99801 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47190 * 90.00178 * 19 17 15 21 21 H 1.48506 * 109.46933 * 209.99940 * 19 17 15 22 22 H 1.48499 * 109.47211 * 329.99930 * 19 17 15 23 23 H 1.09000 * 109.47124 * 59.99721 * 1 2 3 24 24 H 1.09003 * 109.46745 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.46768 * 299.99448 * 1 2 3 26 26 H 1.09004 * 109.46816 * 240.00604 * 2 1 3 27 27 H 1.08997 * 109.46697 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47234 * 300.00532 * 3 2 1 29 29 H 1.08996 * 109.46520 * 60.00603 * 3 2 1 30 30 H 1.09001 * 108.72104 * 86.91283 * 6 5 4 31 31 H 1.08994 * 108.72080 * 204.95831 * 6 5 4 32 32 H 1.08997 * 109.64650 * 164.44053 * 7 6 5 33 33 H 1.09006 * 109.64826 * 285.07236 * 7 6 5 34 34 H 1.07995 * 126.98846 * 180.11734 * 10 9 8 35 35 H 1.08005 * 125.51561 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46868 * 205.00222 * 13 12 8 37 37 H 1.09002 * 109.46758 * 325.00089 * 13 12 8 38 38 H 1.09004 * 109.47297 * 300.00188 * 14 13 12 39 39 H 1.08993 * 109.47491 * 60.00282 * 14 13 12 40 40 H 0.97002 * 120.00302 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.2163 -1.1305 2.1510 6 6 1.6466 -1.7875 3.3756 7 6 2.8899 -2.6588 3.1896 8 6 3.8917 -1.8905 2.3654 9 6 3.4646 -0.9633 1.4374 10 6 4.6541 -0.4062 0.8284 11 6 5.7003 -1.0260 1.4181 12 7 5.2256 -1.9198 2.3411 13 6 6.0611 -2.7819 3.1808 14 6 6.2079 -4.1525 2.5172 15 6 7.0669 -5.0395 3.3812 16 1 7.4683 -4.6631 4.3104 17 6 7.3412 -6.3313 2.9848 18 7 6.8528 -6.7896 1.8530 19 14 8.4065 -7.4304 4.0555 20 1 7.5472 -8.1712 5.0138 21 1 9.1389 -8.3969 3.1982 22 1 9.3803 -6.5972 4.8056 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.8625 -1.0253 4.1243 31 1 0.8327 -2.4132 3.7415 32 1 3.3205 -2.8954 4.1625 33 1 2.6185 -3.5790 2.6721 34 1 4.6967 0.3508 0.0593 35 1 6.7421 -0.8464 1.1968 36 1 7.0452 -2.3288 3.3005 37 1 5.5939 -2.8997 4.1585 38 1 5.2237 -4.6055 2.3974 39 1 6.6750 -4.0347 1.5395 40 1 7.0455 -7.6985 1.5743 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821289261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:23 Heat of formation + Delta-G solvation = 23.119559 kcal Electronic energy + Delta-G solvation = -19317.530949 eV Core-core repulsion = 16517.316001 eV Total energy + Delta-G solvation = -2800.214948 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.42968 -38.71411 -35.94598 -35.87144 -33.93541 -31.75199 -30.53772 -29.44546 -27.90067 -26.72500 -24.75720 -23.72634 -23.01807 -21.84910 -20.12686 -18.78794 -18.19599 -17.79594 -16.74127 -16.29324 -15.87217 -15.69770 -15.36419 -15.06199 -14.82018 -14.60372 -14.29180 -13.90362 -13.57023 -13.46561 -13.18416 -13.14257 -12.91338 -12.81410 -12.66428 -12.54749 -12.11441 -12.09400 -11.84441 -11.76638 -11.66471 -11.47468 -10.85987 -10.67644 -10.03063 -9.35373 -8.74260 -8.30233 -6.44768 0.62697 1.38056 1.39071 1.48791 1.51584 2.02487 2.35762 2.38395 3.04362 3.27563 3.63500 3.80690 3.87711 4.05767 4.10529 4.29274 4.32905 4.36127 4.39503 4.44718 4.58843 4.62193 4.69348 4.78284 4.86275 4.91605 4.97928 5.11671 5.12053 5.20765 5.24034 5.29306 5.34558 5.52214 5.59842 5.64666 5.72861 5.96910 6.01004 6.33400 6.43469 6.71553 7.11272 7.26749 8.81676 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033496 B = 0.004372 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.717187 B = 6403.115800 C = 6681.026368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.043 4.043 3 C -0.135 4.135 4 C 0.260 3.740 5 N -0.572 5.572 6 C 0.064 3.936 7 C -0.075 4.075 8 C 0.026 3.974 9 C -0.245 4.245 10 C -0.155 4.155 11 C -0.039 4.039 12 N -0.418 5.418 13 C 0.112 3.888 14 C 0.026 3.974 15 C -0.546 4.546 16 H 0.073 0.927 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.258 1.258 23 H 0.074 0.926 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.172 0.828 35 H 0.183 0.817 36 H 0.100 0.900 37 H 0.085 0.915 38 H -0.012 1.012 39 H -0.007 1.007 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 14.790 -1.342 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.062 4.062 3 C -0.193 4.193 4 C 0.073 3.927 5 N -0.282 5.282 6 C -0.066 4.066 7 C -0.114 4.114 8 C -0.096 4.096 9 C -0.255 4.255 10 C -0.179 4.179 11 C -0.166 4.166 12 N -0.090 5.090 13 C -0.009 4.009 14 C -0.012 4.012 15 C -0.584 4.584 16 H 0.091 0.909 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.794 3.206 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.181 1.181 23 H 0.093 0.907 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.189 0.811 35 H 0.200 0.800 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.006 0.994 39 H 0.011 0.989 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.204 14.343 -0.910 16.549 hybrid contribution 1.598 -1.466 0.530 2.232 sum -6.606 12.877 -0.381 14.478 Atomic orbital electron populations 1.21570 0.93187 1.01514 1.01963 1.20145 0.97047 0.96549 0.92506 1.21773 1.01806 0.93084 1.02617 1.22951 0.86286 0.89372 0.94045 1.71108 1.37970 1.15381 1.03696 1.21853 0.94710 0.97067 0.92963 1.20607 0.93763 0.97729 0.99278 1.20744 0.84581 1.02058 1.02168 1.20468 0.94871 1.05553 1.04565 1.21837 0.89371 1.03693 1.02997 1.22520 1.00722 0.96786 0.96601 1.43691 1.05061 1.29880 1.30336 1.22099 0.94846 0.90648 0.93314 1.19183 0.95509 0.91048 0.95420 1.21468 1.31850 0.97909 1.07204 0.90924 1.25992 0.97256 0.99805 0.96378 1.70115 1.46137 1.17438 1.23408 0.85369 0.78685 0.78248 0.78299 1.19797 1.20924 1.18136 0.90742 0.93919 0.92910 0.88923 0.91781 0.89796 0.93268 0.90946 0.88042 0.89497 0.91892 0.81052 0.80020 0.88217 0.89694 0.99407 0.98853 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 8.48 71.98 0.61 -2.00 16 2 C -0.04 -0.99 3.21 -11.54 -0.04 -1.02 16 3 C -0.13 -2.42 9.08 71.98 0.65 -1.77 16 4 C 0.26 7.93 6.26 45.10 0.28 8.21 16 5 N -0.57 -18.20 9.56 -330.07 -3.15 -21.36 16 6 C 0.06 1.92 6.96 86.56 0.60 2.52 16 7 C -0.07 -2.55 6.33 29.85 0.19 -2.36 16 8 C 0.03 0.96 6.74 42.27 0.28 1.24 16 9 C -0.24 -8.25 6.07 -19.40 -0.12 -8.36 16 10 C -0.15 -4.59 10.30 23.23 0.24 -4.35 16 11 C -0.04 -1.26 11.37 83.18 0.95 -0.31 16 12 N -0.42 -15.60 2.67 -508.66 -1.36 -16.96 16 13 C 0.11 4.39 5.84 86.38 0.50 4.89 16 14 C 0.03 1.33 5.30 29.85 0.16 1.49 16 15 C -0.55 -29.42 9.11 25.60 0.23 -29.19 16 16 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 17 C 0.00 0.25 5.46 84.65 0.46 0.71 16 18 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 19 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 23 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 1.17 8.04 -2.39 -0.02 1.15 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 27 H 0.06 1.15 5.75 -2.39 -0.01 1.14 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.09 2.78 7.67 -2.39 -0.02 2.76 16 33 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.17 3.84 6.65 -2.91 -0.02 3.82 16 35 H 0.18 4.88 8.06 -2.91 -0.02 4.86 16 36 H 0.10 3.54 8.11 -2.39 -0.02 3.52 16 37 H 0.08 3.16 7.65 -2.39 -0.02 3.15 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -65.60 326.26 3.81 -61.79 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 1.00 Total: 17.81 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 5.01 Total: -30.29 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -4.23 Total: -93.87 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -65.60 3.81 -61.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821289261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.913 kcal (2) G-P(sol) polarization free energy of solvation -65.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds