Wall clock time and date at job start Mon Mar 30 2020 07:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47107 * 2 1 4 4 C 1.50695 * 109.47393 * 180.02562 * 3 2 1 5 5 N 1.29999 * 121.41753 * 359.97438 * 4 3 2 6 6 C 1.45486 * 123.79320 * 182.11645 * 5 4 3 7 7 C 1.52961 * 113.28527 * 325.88802 * 6 5 4 8 8 C 1.50768 * 108.43934 * 44.75957 * 7 6 5 9 9 C 1.37955 * 120.29577 * 330.48810 * 8 7 6 10 10 C 1.44792 * 106.68841 * 179.66449 * 9 8 7 11 11 C 1.35149 * 106.01942 * 0.12578 * 10 9 8 12 12 N 1.33441 * 131.52366 * 150.29476 * 8 7 6 13 13 C 1.46499 * 124.92892 * 0.33181 * 12 8 7 14 14 C 1.52998 * 109.46912 * 84.99848 * 13 12 8 15 15 C 1.50707 * 109.47254 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99531 * 359.97438 * 15 14 13 17 17 C 1.37868 * 120.00267 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00003 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00027 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46961 * 90.00334 * 19 17 15 21 21 H 1.48504 * 109.47292 * 210.00126 * 19 17 15 22 22 H 1.48496 * 109.47499 * 330.00167 * 19 17 15 23 23 H 1.08998 * 109.46723 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47090 * 300.00333 * 1 2 3 25 25 H 1.09001 * 109.47147 * 60.00393 * 1 2 3 26 26 H 1.09001 * 109.47098 * 240.00223 * 2 1 3 27 27 H 1.09001 * 109.47147 * 119.99607 * 2 1 3 28 28 H 1.09000 * 109.47418 * 59.99868 * 3 2 1 29 29 H 1.09001 * 109.46796 * 299.99822 * 3 2 1 30 30 H 1.08998 * 108.72687 * 86.86805 * 6 5 4 31 31 H 1.09002 * 108.72085 * 204.90913 * 6 5 4 32 32 H 1.09000 * 109.64538 * 164.44845 * 7 6 5 33 33 H 1.09007 * 109.63906 * 285.08055 * 7 6 5 34 34 H 1.08004 * 126.98987 * 180.09877 * 10 9 8 35 35 H 1.08000 * 125.51608 * 180.02562 * 11 10 9 36 36 H 1.08999 * 109.47263 * 204.99407 * 13 12 8 37 37 H 1.08996 * 109.47235 * 325.00289 * 13 12 8 38 38 H 1.09003 * 109.47501 * 299.99907 * 14 13 12 39 39 H 1.09001 * 109.47490 * 60.00166 * 14 13 12 40 40 H 0.96997 * 119.99745 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2247 0.3332 -0.0006 6 6 5.6776 0.2726 0.0435 7 6 6.3538 1.4244 -0.7021 8 6 5.6509 2.7071 -0.3364 9 6 4.3128 2.6961 -0.0009 10 6 3.9486 4.0647 0.3006 11 6 5.0715 4.7964 0.1268 12 7 6.0895 3.9649 -0.2584 13 6 7.4609 4.3942 -0.5431 14 6 7.6190 4.6327 -2.0461 15 6 9.0300 5.0737 -2.3390 16 1 9.7426 5.1743 -1.5336 17 6 9.4110 5.3498 -3.6350 18 7 10.6425 5.7342 -3.8907 19 14 8.1784 5.1764 -5.0279 20 1 7.4695 6.4664 -5.2249 21 1 8.8918 4.8079 -6.2771 22 1 7.1942 4.1174 -4.6891 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 5.9974 0.2948 1.0853 31 1 6.0021 -0.6691 -0.3994 32 1 7.4021 1.4848 -0.4098 33 1 6.2788 1.2591 -1.7770 34 1 2.9770 4.4271 0.6025 35 1 5.1531 5.8639 0.2693 36 1 7.6716 5.3182 -0.0045 37 1 8.1579 3.6199 -0.2228 38 1 7.4084 3.7087 -2.5847 39 1 6.9220 5.4070 -2.3665 40 1 10.9104 5.9288 -4.8024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821290361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:27 Heat of formation + Delta-G solvation = 39.004718 kcal Electronic energy + Delta-G solvation = -19104.288580 eV Core-core repulsion = 16304.762465 eV Total energy + Delta-G solvation = -2799.526116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19538 -37.43611 -34.72330 -34.18849 -32.35355 -31.17577 -29.23030 -28.75003 -26.76680 -25.04795 -22.94942 -22.31644 -21.12365 -20.75081 -19.04813 -17.33481 -17.03102 -16.30676 -15.50885 -15.03832 -14.71992 -14.26230 -14.17687 -13.75878 -13.67413 -13.29881 -12.88391 -12.76426 -12.69139 -12.60648 -12.15300 -11.82396 -11.64290 -11.56213 -11.19187 -11.08261 -10.88751 -10.78183 -10.52612 -10.31435 -10.02180 -9.70400 -9.50634 -8.87625 -8.73881 -8.13897 -7.51581 -6.24542 -4.26549 1.80448 2.70187 3.18706 3.27061 3.28623 3.31163 3.53583 4.28322 4.38636 4.77685 4.84305 5.06078 5.09204 5.11662 5.20275 5.32219 5.36200 5.40996 5.55171 5.61303 5.64730 5.76243 5.81714 5.85427 5.88348 5.91269 5.98328 6.08248 6.11777 6.17600 6.27282 6.33671 6.43110 6.77300 6.89479 6.97994 7.15398 7.44918 7.56688 7.71018 8.23570 8.25925 8.75703 9.35894 10.87879 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027091 B = 0.004501 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.290155 B = 6219.787282 C = 6294.061564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.065 4.065 4 C 0.262 3.738 5 N -0.558 5.558 6 C 0.062 3.938 7 C -0.078 4.078 8 C 0.059 3.941 9 C -0.240 4.240 10 C -0.161 4.161 11 C -0.024 4.024 12 N -0.409 5.409 13 C 0.104 3.896 14 C -0.021 4.021 15 C -0.530 4.530 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.895 5.895 19 Si 0.879 3.121 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.266 1.266 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.738 -7.607 8.407 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.103 4.103 4 C 0.075 3.925 5 N -0.268 5.268 6 C -0.068 4.068 7 C -0.117 4.117 8 C -0.064 4.064 9 C -0.250 4.250 10 C -0.186 4.186 11 C -0.153 4.153 12 N -0.080 5.080 13 C -0.016 4.016 14 C -0.059 4.059 15 C -0.569 4.569 16 H 0.094 0.906 17 C -0.128 4.128 18 N -0.532 5.532 19 Si 0.705 3.295 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.191 1.191 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.158 0.842 35 H 0.180 0.820 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.255 -8.403 8.188 19.245 hybrid contribution 0.180 1.048 -0.917 1.404 sum -15.075 -7.354 7.271 18.281 Atomic orbital electron populations 1.21833 0.96485 1.01368 1.01502 1.21306 0.94235 0.95990 1.03215 1.20491 0.88611 0.98244 1.02940 1.22437 0.94716 0.86575 0.88767 1.71092 1.08498 1.28942 1.18297 1.21809 0.87708 0.97330 0.99939 1.20633 0.99675 0.89723 1.01693 1.20359 0.94425 0.86871 1.04708 1.20108 0.93630 0.94420 1.16793 1.21416 0.97757 0.91399 1.08025 1.21985 0.87546 0.96418 1.09310 1.43739 1.10773 1.05568 1.47911 1.22238 0.77713 1.01034 1.00598 1.19890 0.98672 0.97407 0.89883 1.20855 0.94316 1.46905 0.94783 0.90626 1.24944 0.95133 0.94042 0.98712 1.69890 1.17229 1.45362 1.20760 0.86794 0.81650 0.79207 0.81807 1.20018 1.20995 1.19091 0.92960 0.92964 0.92924 0.91529 0.91558 0.89880 0.89899 0.91487 0.89383 0.89727 0.89955 0.84218 0.81973 0.89358 0.89873 0.95974 0.96221 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.11 -1.15 5.21 -26.73 -0.14 -1.29 16 3 C -0.07 -0.73 5.64 -27.88 -0.16 -0.89 16 4 C 0.26 3.86 6.92 -79.87 -0.55 3.30 16 5 N -0.56 -8.50 9.56 -55.67 -0.53 -9.04 16 6 C 0.06 0.89 6.96 -4.61 -0.03 0.85 16 7 C -0.08 -1.22 6.33 -27.87 -0.18 -1.40 16 8 C 0.06 1.02 6.74 -81.96 -0.55 0.47 16 9 C -0.24 -3.91 6.18 -103.91 -0.64 -4.55 16 10 C -0.16 -2.39 11.09 -38.09 -0.42 -2.81 16 11 C -0.02 -0.38 11.37 -16.36 -0.19 -0.57 16 12 N -0.41 -7.21 2.67 -112.13 -0.30 -7.51 16 13 C 0.10 1.95 5.84 -4.04 -0.02 1.92 16 14 C -0.02 -0.47 4.37 -27.88 -0.12 -0.59 16 15 C -0.53 -14.32 9.66 -34.44 -0.33 -14.65 16 16 H 0.08 2.16 7.99 -52.48 -0.42 1.74 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 19 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.24 7.67 -51.93 -0.40 0.84 16 33 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 34 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 37 H 0.08 1.50 7.65 -51.93 -0.40 1.11 16 38 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 39 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 328.04 15.07 4.94 4.94 Total: -1.00 -30.35 328.04 -9.49 -39.84 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.64 Total: 0.06 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -3.07 Total: -19.10 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.06 Total: -42.39 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.35 -9.49 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821290361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.845 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds