Wall clock time and date at job start Mon Mar 30 2020 07:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47107 * 2 1 4 4 C 1.50695 * 109.47393 * 180.02562 * 3 2 1 5 5 N 1.29999 * 121.41753 * 359.97438 * 4 3 2 6 6 C 1.45486 * 123.79320 * 182.11645 * 5 4 3 7 7 C 1.52961 * 113.28527 * 325.88802 * 6 5 4 8 8 C 1.50768 * 108.43934 * 44.75957 * 7 6 5 9 9 C 1.37955 * 120.29577 * 330.48810 * 8 7 6 10 10 C 1.44792 * 106.68841 * 179.66449 * 9 8 7 11 11 C 1.35149 * 106.01942 * 0.12578 * 10 9 8 12 12 N 1.33441 * 131.52366 * 150.29476 * 8 7 6 13 13 C 1.46499 * 124.92892 * 0.33181 * 12 8 7 14 14 C 1.52998 * 109.46912 * 84.99848 * 13 12 8 15 15 C 1.50707 * 109.47254 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99531 * 359.97438 * 15 14 13 17 17 C 1.37868 * 120.00267 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00003 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00027 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46961 * 90.00334 * 19 17 15 21 21 H 1.48504 * 109.47292 * 210.00126 * 19 17 15 22 22 H 1.48496 * 109.47499 * 330.00167 * 19 17 15 23 23 H 1.08998 * 109.46723 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47090 * 300.00333 * 1 2 3 25 25 H 1.09001 * 109.47147 * 60.00393 * 1 2 3 26 26 H 1.09001 * 109.47098 * 240.00223 * 2 1 3 27 27 H 1.09001 * 109.47147 * 119.99607 * 2 1 3 28 28 H 1.09000 * 109.47418 * 59.99868 * 3 2 1 29 29 H 1.09001 * 109.46796 * 299.99822 * 3 2 1 30 30 H 1.08998 * 108.72687 * 86.86805 * 6 5 4 31 31 H 1.09002 * 108.72085 * 204.90913 * 6 5 4 32 32 H 1.09000 * 109.64538 * 164.44845 * 7 6 5 33 33 H 1.09007 * 109.63906 * 285.08055 * 7 6 5 34 34 H 1.08004 * 126.98987 * 180.09877 * 10 9 8 35 35 H 1.08000 * 125.51608 * 180.02562 * 11 10 9 36 36 H 1.08999 * 109.47263 * 204.99407 * 13 12 8 37 37 H 1.08996 * 109.47235 * 325.00289 * 13 12 8 38 38 H 1.09003 * 109.47501 * 299.99907 * 14 13 12 39 39 H 1.09001 * 109.47490 * 60.00166 * 14 13 12 40 40 H 0.96997 * 119.99745 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2247 0.3332 -0.0006 6 6 5.6776 0.2726 0.0435 7 6 6.3538 1.4244 -0.7021 8 6 5.6509 2.7071 -0.3364 9 6 4.3128 2.6961 -0.0009 10 6 3.9486 4.0647 0.3006 11 6 5.0715 4.7964 0.1268 12 7 6.0895 3.9649 -0.2584 13 6 7.4609 4.3942 -0.5431 14 6 7.6190 4.6327 -2.0461 15 6 9.0300 5.0737 -2.3390 16 1 9.7426 5.1743 -1.5336 17 6 9.4110 5.3498 -3.6350 18 7 10.6425 5.7342 -3.8907 19 14 8.1784 5.1764 -5.0279 20 1 7.4695 6.4664 -5.2249 21 1 8.8918 4.8079 -6.2771 22 1 7.1942 4.1174 -4.6891 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 5.9974 0.2948 1.0853 31 1 6.0021 -0.6691 -0.3994 32 1 7.4021 1.4848 -0.4098 33 1 6.2788 1.2591 -1.7770 34 1 2.9770 4.4271 0.6025 35 1 5.1531 5.8639 0.2693 36 1 7.6716 5.3182 -0.0045 37 1 8.1579 3.6199 -0.2228 38 1 7.4084 3.7087 -2.5847 39 1 6.9220 5.4070 -2.3665 40 1 10.9104 5.9288 -4.8024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821290361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:26 Heat of formation + Delta-G solvation = 22.663161 kcal Electronic energy + Delta-G solvation = -19104.997204 eV Core-core repulsion = 16304.762465 eV Total energy + Delta-G solvation = -2800.234739 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.43388 -38.56124 -35.95597 -35.63934 -34.12253 -32.38513 -30.78308 -29.88631 -27.75543 -26.70238 -24.09637 -23.55261 -22.68996 -21.80587 -20.29816 -19.16086 -18.21820 -17.77572 -16.74727 -16.40192 -15.98628 -15.71132 -15.31518 -15.17821 -14.96152 -14.62548 -14.59544 -13.95036 -13.73338 -13.57116 -13.53710 -13.12730 -13.00251 -12.87285 -12.55840 -12.31535 -12.09769 -11.93433 -11.87618 -11.84017 -11.61364 -11.52740 -10.88633 -10.83664 -10.02409 -9.37609 -8.75808 -8.40921 -6.47011 0.61885 1.26878 1.29919 1.39724 1.49238 1.98823 2.24780 2.36825 2.94227 3.32979 3.62717 3.77474 3.86144 4.03536 4.10119 4.27250 4.29777 4.34429 4.38818 4.43538 4.53304 4.61653 4.68762 4.78855 4.86418 4.93263 4.98238 5.01807 5.06042 5.08184 5.13137 5.20988 5.33292 5.43759 5.48359 5.64575 5.71207 5.97372 6.09022 6.31038 6.40797 6.60411 7.11758 7.18854 8.74792 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027091 B = 0.004501 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.290155 B = 6219.787282 C = 6294.061564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C -0.062 4.062 4 C 0.255 3.745 5 N -0.572 5.572 6 C 0.063 3.937 7 C -0.077 4.077 8 C 0.027 3.973 9 C -0.248 4.248 10 C -0.154 4.154 11 C -0.037 4.037 12 N -0.420 5.420 13 C 0.117 3.883 14 C -0.011 4.011 15 C -0.533 4.533 16 H 0.047 0.953 17 C 0.018 3.982 18 N -0.940 5.940 19 Si 0.942 3.058 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.261 1.261 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.173 0.827 35 H 0.185 0.815 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.013 0.987 39 H 0.020 0.980 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.440 -7.626 8.715 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.100 4.100 4 C 0.069 3.931 5 N -0.282 5.282 6 C -0.067 4.067 7 C -0.116 4.116 8 C -0.094 4.094 9 C -0.258 4.258 10 C -0.178 4.178 11 C -0.164 4.164 12 N -0.092 5.092 13 C -0.004 4.004 14 C -0.049 4.049 15 C -0.572 4.572 16 H 0.066 0.934 17 C -0.181 4.181 18 N -0.579 5.579 19 Si 0.766 3.234 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.185 1.185 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.190 0.810 35 H 0.202 0.798 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.031 0.969 39 H 0.038 0.962 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.979 -8.429 8.512 21.604 hybrid contribution 1.036 1.044 -0.936 1.744 sum -16.943 -7.384 7.575 19.975 Atomic orbital electron populations 1.21790 0.94609 1.01989 1.02311 1.21229 0.95775 0.95281 1.01920 1.20607 0.86206 0.98966 1.04227 1.22981 0.96290 0.85769 0.88106 1.71128 1.08840 1.29356 1.18896 1.21854 0.87492 0.97328 1.00040 1.20640 0.99970 0.89980 1.01036 1.20743 0.95458 0.87206 1.06040 1.20527 0.93414 0.95741 1.16074 1.21837 0.98821 0.90435 1.06745 1.22542 0.87293 0.97523 1.09074 1.43679 1.10430 1.06058 1.49033 1.21896 0.79043 1.01685 0.97786 1.19710 0.95843 0.96517 0.92863 1.21159 0.95916 1.46030 0.94078 0.93435 1.25801 0.96832 0.93932 1.01491 1.70017 1.19263 1.47100 1.21552 0.85782 0.79349 0.79608 0.78644 1.18896 1.20511 1.18533 0.92513 0.91884 0.92347 0.93144 0.92566 0.87924 0.88962 0.91173 0.88069 0.89553 0.91225 0.80959 0.79781 0.88285 0.89853 0.96885 0.96198 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.10 -1.98 5.21 30.60 0.16 -1.82 16 3 C -0.06 -1.24 5.64 29.85 0.17 -1.07 16 4 C 0.26 7.08 6.92 45.10 0.31 7.39 16 5 N -0.57 -16.83 9.56 -330.04 -3.15 -19.98 16 6 C 0.06 1.75 6.96 86.56 0.60 2.35 16 7 C -0.08 -2.40 6.33 29.86 0.19 -2.21 16 8 C 0.03 0.90 6.74 42.27 0.28 1.19 16 9 C -0.25 -7.62 6.18 -19.40 -0.12 -7.74 16 10 C -0.15 -4.11 11.09 23.23 0.26 -3.85 16 11 C -0.04 -1.08 11.37 83.18 0.95 -0.13 16 12 N -0.42 -14.28 2.67 -508.68 -1.36 -15.64 16 13 C 0.12 4.30 5.84 86.38 0.50 4.81 16 14 C -0.01 -0.51 4.37 29.85 0.13 -0.38 16 15 C -0.53 -29.17 9.66 25.60 0.25 -28.93 16 16 H 0.05 2.80 7.99 -2.91 -0.02 2.77 16 17 C 0.02 1.03 5.47 84.65 0.46 1.49 16 18 N -0.94 -56.87 13.96 21.44 0.30 -56.57 16 19 Si 0.94 43.80 27.47 68.60 1.88 45.69 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.26 -11.81 6.54 99.48 0.65 -11.16 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 27 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.09 2.56 7.67 -2.39 -0.02 2.55 16 33 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.19 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.10 3.40 8.11 -2.39 -0.02 3.38 16 37 H 0.08 3.03 7.65 -2.39 -0.02 3.01 16 38 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 39 H 0.02 0.89 7.57 -2.39 -0.02 0.88 16 40 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -64.89 328.04 3.47 -61.42 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.94 Total: 15.37 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 4.86 Total: -30.28 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -4.21 Total: -92.20 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Total: -64.89 3.47 -61.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821290361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.083 kcal (2) G-P(sol) polarization free energy of solvation -64.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds